CmaCh02G013770 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G013770
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Protein SMG8
Location	Cma_Chr02: 8023648 .. 8029482 (+)
RNA-Seq Expression	CmaCh02G013770
Synteny	CmaCh02G013770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAGAAGTGAAGCACTGAAGCAGTTCCAGTTGCATCTGGAGCTCAATTTTTCTCTCATTCATGGACATGTCCAATTCGTCCTCTGTGCGTGTACTTGTCCGGCCACCACCGATATCAACACCCACTTCCTCTTCAGCATCTCAAACGCCTCTCCCTTCTCGTACTGCCTCACCCGATCCCTCTACTTCATTAGCTCCTTCGTCGCCATCTCCGTCGCTTTCTGTTCCTCGTTTTTCCGACGGTATCGTTGTTGTCGGTTTCATTGGCAGGAGACCCGATGATTCGATCCAGCTCATTAATCGAGTTATCGATTCCAATGTGTTTGGGTCCGGTAAATTGGATAAAAAATTGGATGTCGAGAAAGAGGAAGTTAGAGATTGGTTCAAGCGGCGAAGAATTAGTTATCATCATGAGGAGGAGAGAGGCATTCTCTTTTTGCAGTTTTCTTCCCACAGGGGCTCTGTGTTCGATGCCGAAATCGATTATGATTCGGCGATTGAAGAACATGATTTTGGGGATCTTCAGGGAATGCTTTTTATGTTCTCTGTGAGTGCTCGTCAATTTCTCTCTCTTTTGTATTTTTTTATTTTTCTATCTCTTCATGTTTGGACGTCTGGGTTTATCGAAATGGTTCAACTTGGATTGTTTGCTTGTATCCTAAATGGAGCATTCGGTGAAATGGTTGAGAGTAAATTTGCGTTAGCTCTAGGTTGTGAAACTTCAGATGTTTGTCTTCGGGTTATTTGACAGAGCTGCACTGTGCTAAGATGGTGCTTTCAATATGCATTTTTAGCTTAAACGTTTTATCCCTATCATTAAAATGAAACCCTCTAAATGTATGCATAAATATATTAAATTGCTTATTTAGAAACGAAACGGAGATTGGACAATCTTTTGATTCAGCGTCGTCTAATTTTGTTTAGGCTCTTTATCCTGGTAGGATTAAGAATGATTGAACAAAAAATTATTGGATGAGCGTTTGGTTTTGTAGGGCCTTGATAAATAAGCAGTGTGTGGTGCCCCCTTTTAGTTTCAACATATGATATCTGGCCAAACATTTAATTCAATTACTGATGCAGGTCTGCCATGTAATCATATATATTCAAGAGGGGTTGCGGTTTGATACTAATATTTTGAAAAAATTTAGAGCCCTGCAATCTGCTAAGCACGTATTAACTCCATTTATAAAATCTCGAGCTACACCACCATTGCCATCTAGGCTGCATTCTTCATCTGCTTCACGATCTGTTGGTTCAGCAGCCGTGTCTAACAACTCTTCTCCCATTAGAAGTGGTTCTATATTAACACGCAATGCTTCCGGCATCTCTGTCATGTCAGGTTTAGGTTCATATACCTCATTGTTTCCTGGACAGTGTACTCCAGTCATACTTTTTATTTTTATTGATGACTTCTCAGATGGCCCGATGGCTAGTTCTAATGTGGAGGGAATAGATACAATATCAATTAATCAGTCTCCAAGTTCAGACAGTATATCCAGGCCAAATTTACCAGTTAAAGGTTCTGGATCTGTAGTTGTGCTTGCCCGTCCTGTGAGCAAATCAGAAGGTGGTTTCAGGAAGAAATTGCAGTCATCTCTTGAAGCACAAATTCGCTTTCTAATCAAGAAATGTCGAACGCTTTCTGGTTCTGAGACCAGTCATGCAGGGTCTAGAGGTGGAAGTGCCTCAAGTTCTGCACCTTTGTTTTCACTTGATTCATCAAAAGCCGTTGTTCTGGTGGACAAGTCTGCAAATAGGACGGCTGAGTCTCTGGACTTTGCCACAAGCCTCGTGGAAGATGTTTTGAATGGAAAAGCTACTTCAGATTCTCTTCTGCTTGAAAGTCATGGTCAAAGTGCTAGCAGAGAGGATATAGTATCTCTAAGGGAATTTATCTATCGGCAGTCAGACATTCTAAGGGGTAGAGGGGGGCTGGTGCATAGTACAAGCAGTGGTTCAGCTGGTGGGGTTGGCATGGTCGCTGTTGCTGCTGCTGCAGCTGCTGCATCAGCGGCATCTGGAAAAGCCTTTACTACTCCTGAGCTTCCTAGTATGGAAATTTGGTTGTCTTCAAGTCAACAGATTCTCCAGGGAATTCTTTGTGCAAAAGGTGGTTGCATAGATGAAGTGGAAATCAGCAAACGAAAACCACGTCACCGGCACATTCCTTCTGCGTTGATTGAGGGAAATGCTTTGAAGGGTCTGGATCCTTTAGATATTGCTGTATCTTGGTTGGAAAGTGGTAAAGGTTTAAATATGAAGTTTTCAACTTCATGGAGTGAAAGAGCATTACCAGCTGCAAAGGAGGTTTATCTAAGAGATTTACCTGCTTGTTACCCCACTTCACAGCATGAAGCCCACTTAGAGAAGGCTTTGCTTGCTTTCCATTCAATGGTTAAGGGACCTGCAGTGCAACATTTTGCCAAAAGGTTGGAGGAAGAATGCAAATCCATTTGGAATTCTGGGAGGCAGCTTTGTGATGCCGTTAGTCTGACAGGAAAACCATGTATGCATCAAAGACATAGCACAGAGAATGGAGATTCACCTTCAGAAGCCATGCAAAAAACTCATTCAAGTGGATATGTCTTCCTACATGCTTGTGCTTGTGGCCGTTCACGACGACTACGATCTGATCCTTTTGATTTTGAAGCAGCAAATGTCACTTTCAACCGTTTTTCTGACTGTGACAATTTTCTTCCAGTTTTCCAGTTACCAGGAGTAAGCATAACAGGACCCATTCAGCCATCATCATGGTCTCTGATTCGGGTTGGTGGTGCAAAGTACTACGAACCTTCAAAAGGTTTACTCCAGAGTGGTTTCTATCCCACTCAAAAGTTCCTATTCAAATGGAAAATTAATACCAGAATAAGGAAGACTCCAAATGATTTAACGGAAAATATAATGCTGCGTGGCTCTTTAGTTAAGTCATTCATGGACTCTAAGGTTGAACCTAATGTAAATGTAAACTTGAAGAGGGCAGATGTAGCACAACTGAAGTCGGGGGATTCACAGCCTGGGATTGATAATGAGAGAAATTCCTCAGAAAACATAGCTGAAGACAAAAAAAGCATAAGTGGCAGAGGTCTTCCCAACTTTACCCTGCGAAAACCTTTTTCTGAGGTTGTAGCCGGATCTTCAGGTCCAGATGTTGGATTTCCACCTCTCCAGCAGAGGATACACTCTTCACCAGGTATGGATAAGGGCATCAAACAAAATAAGGATGTTAATAATTATGAACGAGGCTGTGTTACCGTTGATAACCGTGGCTTCAAGAACTCTGAAAATATTATTAGTCTTTCAAAAAAATCAGATGAGATTAGCGGCAATGAGCATTCAGATAGTGACTCCTTTCTGCGGATAGGTACTAATGTAGTTCCTATGAACGTAAATAGTCTTGAAAAAACAAAAAACACTCTTCTGAAGCAAACACTTATATATATTGGCTTTGAGCACGAATGCCCTCATGGACACCGTTTCTTACTAAACCCCGAGCATCTTAAGGAACTTGGATCATCATATGCAACAATTAAAAAATCTCATACTCCTGTGCAAGGTGCTGCATGCAATCTAGCTGGTCCTCAGAGATATGGTAAAAGTGATTGTCATGGTAAATCTCATGATAGTGTTAGTTCAGCAAATGCAACGTTCTCAAGTAAGGAGAGAAATTTAGATAAGTTAAAGGATGCAGTGAGTGGTGGCAGCATGTATTCAGATGATCAGTCAAACTGCACTAGAAGGATGACATCAAACAATCTGACATCTGTTAGTGCAACTGTTTCCAATTCTGTAAAAGACCTTGAAAAAGGTGTTAAGTATATTGGCATTGAGGACAATGGATCTGGTTTTTTCATGTTGAATCGGGACCTACCAATTTTCATGAACTGCCCACATTGCAAGCTCTCAAAGAATGAGAAAGATCCCCCAAATGTTAAGTTCTCTGGCATGATATCTCAACTTCAAAGGATTTTCGTGGTAAGCCATTCTTTTATGAGGTCTTTTTCTAATGTCTTCGGTTCTCTCTTTAGAACTCTTGTAGATCCTTTTTAAGTGTTTGGTTTCTTTTGATGATGCAATGAACTTTTAATTGGTTTCTTTTTTGGTGGTCCTTTGATTAATTTGACTAGAAAGAATAGATTAGGGGGAACTGCGGAAAAGCGGTGAAAGATTTCTTTCTTCTTTTTATTTTAATGAATAACTTGTTTTTGCCTTCTCATCTTGGGCTAAAAATGGTTTTGAGACTTTTTTTCTCTTGTAGGGATAAGACATAGCCCTCAAGGCAACGTGAGGGATAAGCCTTGATTAAAATTAAATTAAAATAACGTTGATAGTAAGCATAAAAGTATATAATCAAGTATTACTAAACATAATCATCATATAAAGTAATAAAAAAAATGATGTCTATTATTTTCAGTCTCTCTAATAAATGTTTTAAAATTTATTTTTGAAATCATTATTTTCAATCTGTATGTTTTAACGTTGATAGTAATCATAATTTTGGTTTATAGCATATTGTAAAGAAGCATCTTATTTATCTTACTGTTCCTTTTTGTTGTTCAATAACCAAAATAATAACCAAGGAAATGTGGTGGCAGGTGACGCCTCCCTTTCCAACAGTGCTGGCTACACATCCAGTGATACAATTTGAGGTTTGTCCCAATTTTCTATGAATATGCATTCCTAATTATTTTGGGGTGTAACATGAAATGTTAAGCTGTATATTATTTATCTCTAATTTCAAAATAGATTCAAGTTGATCTATGGAAATTCTTGTTTGTTTCATTCTTTAATGTTTGATTTTAGGAGTTGAGGGAAAAAAAAAAACAATTTCTTCCAGCTCGATCAAAATCCACTTACTAAATTGGTATATGATCTTAAAAGAGGAGTATGCAGAAAAGTATTAATTAGCAAAATCCTAACATGTGTCATTTTGAAATGTACTGCAAGAATGCTAAATAGGCCGTTGCTGTGTTTTTCCTCCTTGAGTTTGACTTTGCTTGTGCATTGCCTAAAATAATCGAGATGGAAAAGTTATTTTTTACATTATTTATTTTTTTCTTATCAAGCCTACCTGAAGTTAGCAATTAAAGATAGAAAAAAGAGCTTTACATTACCACGACTGCATTTGCAGAGAATGCACCAACAAGGGGAGCTACATCTGTAAGGAGTTGTGAGTTGGATGTTGTCACAAATATTTAACCCTTTGAATCTCAGAGTTTAAAGAAAAGCTTTGCATTTATTTGTTATACCATCGAGGTTAAAACAATTAAAGATAGAAAAAGAGCTCCCCCCAGCCAAAATGTCTCCCTGAATTTGTCCATACATTCTCTGATAGTAATATTAAAACCTTGCGCATTTAGAGCTACTGCAACTACCTTCTCCTATCTACCAATTGAAAGAGGCCAAACTGTAATGGCTTCTAATTACAACATGCCACATAGCATCTTTTTTCCTGGTGATTTATACTTGAGACTTCTAAACATTTTGTTTTCCGTAGTTGACTGATCAACATTTGTTTTTCACATGCTTCATGCCCTCATCCAGTATGGTACTACACCCTTGACTGATCTTCTTCTTGCAGGAGTCTTGCCTGCCCCCCTCTGTTCCTGGACGACAGCAGAAACTGCAGTTTGCACTTGGATGTCAAGTAGTCTTGCCCCCCGAGAGTTTTCTGACACTTAGGCTTCCATTTGTTTATGGAGTGCAACTGGATGATGGAAGTCTTCACCCTCTTAACCCTCTTCAGCATCAACCTGAAGCGACTGCTTGGATAATTGGGGGCACAACATTGCAGATCCTGTCAAAGTCTGGCAGTCTGGATGAGGGATTTCAAACATAA

mRNA sequence

TCAGAAGTGAAGCACTGAAGCAGTTCCAGTTGCATCTGGAGCTCAATTTTTCTCTCATTCATGGACATGTCCAATTCGTCCTCTGTGCGTGTACTTGTCCGGCCACCACCGATATCAACACCCACTTCCTCTTCAGCATCTCAAACGCCTCTCCCTTCTCGTACTGCCTCACCCGATCCCTCTACTTCATTAGCTCCTTCGTCGCCATCTCCGTCGCTTTCTGTTCCTCGTTTTTCCGACGGTATCGTTGTTGTCGGTTTCATTGGCAGGAGACCCGATGATTCGATCCAGCTCATTAATCGAGTTATCGATTCCAATGTGTTTGGGTCCGGTAAATTGGATAAAAAATTGGATGTCGAGAAAGAGGAAGTTAGAGATTGGTTCAAGCGGCGAAGAATTAGTTATCATCATGAGGAGGAGAGAGGCATTCTCTTTTTGCAGTTTTCTTCCCACAGGGGCTCTGTGTTCGATGCCGAAATCGATTATGATTCGGCGATTGAAGAACATGATTTTGGGGATCTTCAGGGAATGCTTTTTATGTTCTCTGTCTGCCATGTAATCATATATATTCAAGAGGGGTTGCGGTTTGATACTAATATTTTGAAAAAATTTAGAGCCCTGCAATCTGCTAAGCACGTATTAACTCCATTTATAAAATCTCGAGCTACACCACCATTGCCATCTAGGCTGCATTCTTCATCTGCTTCACGATCTGTTGGTTCAGCAGCCGTGTCTAACAACTCTTCTCCCATTAGAAGTGGTTCTATATTAACACGCAATGCTTCCGGCATCTCTGTCATGTCAGGTTTAGGTTCATATACCTCATTGTTTCCTGGACAGTGTACTCCAGTCATACTTTTTATTTTTATTGATGACTTCTCAGATGGCCCGATGGCTAGTTCTAATGTGGAGGGAATAGATACAATATCAATTAATCAGTCTCCAAGTTCAGACAGTATATCCAGGCCAAATTTACCAGTTAAAGGTTCTGGATCTGTAGTTGTGCTTGCCCGTCCTGTGAGCAAATCAGAAGGTGGTTTCAGGAAGAAATTGCAGTCATCTCTTGAAGCACAAATTCGCTTTCTAATCAAGAAATGTCGAACGCTTTCTGGTTCTGAGACCAGTCATGCAGGGTCTAGAGGTGGAAGTGCCTCAAGTTCTGCACCTTTGTTTTCACTTGATTCATCAAAAGCCGTTGTTCTGGTGGACAAGTCTGCAAATAGGACGGCTGAGTCTCTGGACTTTGCCACAAGCCTCGTGGAAGATGTTTTGAATGGAAAAGCTACTTCAGATTCTCTTCTGCTTGAAAGTCATGGTCAAAGTGCTAGCAGAGAGGATATAGTATCTCTAAGGGAATTTATCTATCGGCAGTCAGACATTCTAAGGGGTAGAGGGGGGCTGGTGCATAGTACAAGCAGTGGTTCAGCTGGTGGGGTTGGCATGGTCGCTGTTGCTGCTGCTGCAGCTGCTGCATCAGCGGCATCTGGAAAAGCCTTTACTACTCCTGAGCTTCCTAGTATGGAAATTTGGTTGTCTTCAAGTCAACAGATTCTCCAGGGAATTCTTTGTGCAAAAGGTGGTTGCATAGATGAAGTGGAAATCAGCAAACGAAAACCACGTCACCGGCACATTCCTTCTGCGTTGATTGAGGGAAATGCTTTGAAGGGTCTGGATCCTTTAGATATTGCTGTATCTTGGTTGGAAAGTGGTAAAGGTTTAAATATGAAGTTTTCAACTTCATGGAGTGAAAGAGCATTACCAGCTGCAAAGGAGGTTTATCTAAGAGATTTACCTGCTTGTTACCCCACTTCACAGCATGAAGCCCACTTAGAGAAGGCTTTGCTTGCTTTCCATTCAATGGTTAAGGGACCTGCAGTGCAACATTTTGCCAAAAGGTTGGAGGAAGAATGCAAATCCATTTGGAATTCTGGGAGGCAGCTTTGTGATGCCGTTAGTCTGACAGGAAAACCATGTATGCATCAAAGACATAGCACAGAGAATGGAGATTCACCTTCAGAAGCCATGCAAAAAACTCATTCAAGTGGATATGTCTTCCTACATGCTTGTGCTTGTGGCCGTTCACGACGACTACGATCTGATCCTTTTGATTTTGAAGCAGCAAATGTCACTTTCAACCGTTTTTCTGACTGTGACAATTTTCTTCCAGTTTTCCAGTTACCAGGAGTAAGCATAACAGGACCCATTCAGCCATCATCATGGTCTCTGATTCGGGTTGGTGGTGCAAAGTACTACGAACCTTCAAAAGGTTTACTCCAGAGTGGTTTCTATCCCACTCAAAAGTTCCTATTCAAATGGAAAATTAATACCAGAATAAGGAAGACTCCAAATGATTTAACGGAAAATATAATGCTGCGTGGCTCTTTAGTTAAGTCATTCATGGACTCTAAGGTTGAACCTAATGTAAATGTAAACTTGAAGAGGGCAGATGTAGCACAACTGAAGTCGGGGGATTCACAGCCTGGGATTGATAATGAGAGAAATTCCTCAGAAAACATAGCTGAAGACAAAAAAAGCATAAGTGGCAGAGGTCTTCCCAACTTTACCCTGCGAAAACCTTTTTCTGAGGTTGTAGCCGGATCTTCAGGTCCAGATGTTGGATTTCCACCTCTCCAGCAGAGGATACACTCTTCACCAGGTATGGATAAGGGCATCAAACAAAATAAGGATGTTAATAATTATGAACGAGGCTGTGTTACCGTTGATAACCGTGGCTTCAAGAACTCTGAAAATATTATTAGTCTTTCAAAAAAATCAGATGAGATTAGCGGCAATGAGCATTCAGATAGTGACTCCTTTCTGCGGATAGGTACTAATGTAGTTCCTATGAACGTAAATAGTCTTGAAAAAACAAAAAACACTCTTCTGAAGCAAACACTTATATATATTGGCTTTGAGCACGAATGCCCTCATGGACACCGTTTCTTACTAAACCCCGAGCATCTTAAGGAACTTGGATCATCATATGCAACAATTAAAAAATCTCATACTCCTGTGCAAGGTGCTGCATGCAATCTAGCTGGTCCTCAGAGATATGGTAAAAGTGATTGTCATGGTAAATCTCATGATAGTGTTAGTTCAGCAAATGCAACGTTCTCAAGTAAGGAGAGAAATTTAGATAAGTTAAAGGATGCAGTGAGTGGTGGCAGCATGTATTCAGATGATCAGTCAAACTGCACTAGAAGGATGACATCAAACAATCTGACATCTGTTAGTGCAACTGTTTCCAATTCTGTAAAAGACCTTGAAAAAGGTGTTAAGTATATTGGCATTGAGGACAATGGATCTGGTTTTTTCATGTTGAATCGGGACCTACCAATTTTCATGAACTGCCCACATTGCAAGCTCTCAAAGAATGAGAAAGATCCCCCAAATGTTAAGTTCTCTGGCATGATATCTCAACTTCAAAGGATTTTCGTGGTGACGCCTCCCTTTCCAACAGTGCTGGCTACACATCCAGTGATACAATTTGAGGAGTCTTGCCTGCCCCCCTCTGTTCCTGGACGACAGCAGAAACTGCAGTTTGCACTTGGATGTCAAGTAGTCTTGCCCCCCGAGAGTTTTCTGACACTTAGGCTTCCATTTGTTTATGGAGTGCAACTGGATGATGGAAGTCTTCACCCTCTTAACCCTCTTCAGCATCAACCTGAAGCGACTGCTTGGATAATTGGGGGCACAACATTGCAGATCCTGTCAAAGTCTGGCAGTCTGGATGAGGGATTTCAAACATAA

Coding sequence (CDS)

ATGGACATGTCCAATTCGTCCTCTGTGCGTGTACTTGTCCGGCCACCACCGATATCAACACCCACTTCCTCTTCAGCATCTCAAACGCCTCTCCCTTCTCGTACTGCCTCACCCGATCCCTCTACTTCATTAGCTCCTTCGTCGCCATCTCCGTCGCTTTCTGTTCCTCGTTTTTCCGACGGTATCGTTGTTGTCGGTTTCATTGGCAGGAGACCCGATGATTCGATCCAGCTCATTAATCGAGTTATCGATTCCAATGTGTTTGGGTCCGGTAAATTGGATAAAAAATTGGATGTCGAGAAAGAGGAAGTTAGAGATTGGTTCAAGCGGCGAAGAATTAGTTATCATCATGAGGAGGAGAGAGGCATTCTCTTTTTGCAGTTTTCTTCCCACAGGGGCTCTGTGTTCGATGCCGAAATCGATTATGATTCGGCGATTGAAGAACATGATTTTGGGGATCTTCAGGGAATGCTTTTTATGTTCTCTGTCTGCCATGTAATCATATATATTCAAGAGGGGTTGCGGTTTGATACTAATATTTTGAAAAAATTTAGAGCCCTGCAATCTGCTAAGCACGTATTAACTCCATTTATAAAATCTCGAGCTACACCACCATTGCCATCTAGGCTGCATTCTTCATCTGCTTCACGATCTGTTGGTTCAGCAGCCGTGTCTAACAACTCTTCTCCCATTAGAAGTGGTTCTATATTAACACGCAATGCTTCCGGCATCTCTGTCATGTCAGGTTTAGGTTCATATACCTCATTGTTTCCTGGACAGTGTACTCCAGTCATACTTTTTATTTTTATTGATGACTTCTCAGATGGCCCGATGGCTAGTTCTAATGTGGAGGGAATAGATACAATATCAATTAATCAGTCTCCAAGTTCAGACAGTATATCCAGGCCAAATTTACCAGTTAAAGGTTCTGGATCTGTAGTTGTGCTTGCCCGTCCTGTGAGCAAATCAGAAGGTGGTTTCAGGAAGAAATTGCAGTCATCTCTTGAAGCACAAATTCGCTTTCTAATCAAGAAATGTCGAACGCTTTCTGGTTCTGAGACCAGTCATGCAGGGTCTAGAGGTGGAAGTGCCTCAAGTTCTGCACCTTTGTTTTCACTTGATTCATCAAAAGCCGTTGTTCTGGTGGACAAGTCTGCAAATAGGACGGCTGAGTCTCTGGACTTTGCCACAAGCCTCGTGGAAGATGTTTTGAATGGAAAAGCTACTTCAGATTCTCTTCTGCTTGAAAGTCATGGTCAAAGTGCTAGCAGAGAGGATATAGTATCTCTAAGGGAATTTATCTATCGGCAGTCAGACATTCTAAGGGGTAGAGGGGGGCTGGTGCATAGTACAAGCAGTGGTTCAGCTGGTGGGGTTGGCATGGTCGCTGTTGCTGCTGCTGCAGCTGCTGCATCAGCGGCATCTGGAAAAGCCTTTACTACTCCTGAGCTTCCTAGTATGGAAATTTGGTTGTCTTCAAGTCAACAGATTCTCCAGGGAATTCTTTGTGCAAAAGGTGGTTGCATAGATGAAGTGGAAATCAGCAAACGAAAACCACGTCACCGGCACATTCCTTCTGCGTTGATTGAGGGAAATGCTTTGAAGGGTCTGGATCCTTTAGATATTGCTGTATCTTGGTTGGAAAGTGGTAAAGGTTTAAATATGAAGTTTTCAACTTCATGGAGTGAAAGAGCATTACCAGCTGCAAAGGAGGTTTATCTAAGAGATTTACCTGCTTGTTACCCCACTTCACAGCATGAAGCCCACTTAGAGAAGGCTTTGCTTGCTTTCCATTCAATGGTTAAGGGACCTGCAGTGCAACATTTTGCCAAAAGGTTGGAGGAAGAATGCAAATCCATTTGGAATTCTGGGAGGCAGCTTTGTGATGCCGTTAGTCTGACAGGAAAACCATGTATGCATCAAAGACATAGCACAGAGAATGGAGATTCACCTTCAGAAGCCATGCAAAAAACTCATTCAAGTGGATATGTCTTCCTACATGCTTGTGCTTGTGGCCGTTCACGACGACTACGATCTGATCCTTTTGATTTTGAAGCAGCAAATGTCACTTTCAACCGTTTTTCTGACTGTGACAATTTTCTTCCAGTTTTCCAGTTACCAGGAGTAAGCATAACAGGACCCATTCAGCCATCATCATGGTCTCTGATTCGGGTTGGTGGTGCAAAGTACTACGAACCTTCAAAAGGTTTACTCCAGAGTGGTTTCTATCCCACTCAAAAGTTCCTATTCAAATGGAAAATTAATACCAGAATAAGGAAGACTCCAAATGATTTAACGGAAAATATAATGCTGCGTGGCTCTTTAGTTAAGTCATTCATGGACTCTAAGGTTGAACCTAATGTAAATGTAAACTTGAAGAGGGCAGATGTAGCACAACTGAAGTCGGGGGATTCACAGCCTGGGATTGATAATGAGAGAAATTCCTCAGAAAACATAGCTGAAGACAAAAAAAGCATAAGTGGCAGAGGTCTTCCCAACTTTACCCTGCGAAAACCTTTTTCTGAGGTTGTAGCCGGATCTTCAGGTCCAGATGTTGGATTTCCACCTCTCCAGCAGAGGATACACTCTTCACCAGGTATGGATAAGGGCATCAAACAAAATAAGGATGTTAATAATTATGAACGAGGCTGTGTTACCGTTGATAACCGTGGCTTCAAGAACTCTGAAAATATTATTAGTCTTTCAAAAAAATCAGATGAGATTAGCGGCAATGAGCATTCAGATAGTGACTCCTTTCTGCGGATAGGTACTAATGTAGTTCCTATGAACGTAAATAGTCTTGAAAAAACAAAAAACACTCTTCTGAAGCAAACACTTATATATATTGGCTTTGAGCACGAATGCCCTCATGGACACCGTTTCTTACTAAACCCCGAGCATCTTAAGGAACTTGGATCATCATATGCAACAATTAAAAAATCTCATACTCCTGTGCAAGGTGCTGCATGCAATCTAGCTGGTCCTCAGAGATATGGTAAAAGTGATTGTCATGGTAAATCTCATGATAGTGTTAGTTCAGCAAATGCAACGTTCTCAAGTAAGGAGAGAAATTTAGATAAGTTAAAGGATGCAGTGAGTGGTGGCAGCATGTATTCAGATGATCAGTCAAACTGCACTAGAAGGATGACATCAAACAATCTGACATCTGTTAGTGCAACTGTTTCCAATTCTGTAAAAGACCTTGAAAAAGGTGTTAAGTATATTGGCATTGAGGACAATGGATCTGGTTTTTTCATGTTGAATCGGGACCTACCAATTTTCATGAACTGCCCACATTGCAAGCTCTCAAAGAATGAGAAAGATCCCCCAAATGTTAAGTTCTCTGGCATGATATCTCAACTTCAAAGGATTTTCGTGGTGACGCCTCCCTTTCCAACAGTGCTGGCTACACATCCAGTGATACAATTTGAGGAGTCTTGCCTGCCCCCCTCTGTTCCTGGACGACAGCAGAAACTGCAGTTTGCACTTGGATGTCAAGTAGTCTTGCCCCCCGAGAGTTTTCTGACACTTAGGCTTCCATTTGTTTATGGAGTGCAACTGGATGATGGAAGTCTTCACCCTCTTAACCCTCTTCAGCATCAACCTGAAGCGACTGCTTGGATAATTGGGGGCACAACATTGCAGATCCTGTCAAAGTCTGGCAGTCTGGATGAGGGATTTCAAACATAA

Protein sequence

MDMSNSSSVRVLVRPPPISTPTSSSASQTPLPSRTASPDPSTSLAPSSPSPSLSVPRFSDGIVVVGFIGRRPDDSIQLINRVIDSNVFGSGKLDKKLDVEKEEVRDWFKRRRISYHHEEERGILFLQFSSHRGSVFDAEIDYDSAIEEHDFGDLQGMLFMFSVCHVIIYIQEGLRFDTNILKKFRALQSAKHVLTPFIKSRATPPLPSRLHSSSASRSVGSAAVSNNSSPIRSGSILTRNASGISVMSGLGSYTSLFPGQCTPVILFIFIDDFSDGPMASSNVEGIDTISINQSPSSDSISRPNLPVKGSGSVVVLARPVSKSEGGFRKKLQSSLEAQIRFLIKKCRTLSGSETSHAGSRGGSASSSAPLFSLDSSKAVVLVDKSANRTAESLDFATSLVEDVLNGKATSDSLLLESHGQSASREDIVSLREFIYRQSDILRGRGGLVHSTSSGSAGGVGMVAVAAAAAAASAASGKAFTTPELPSMEIWLSSSQQILQGILCAKGGCIDEVEISKRKPRHRHIPSALIEGNALKGLDPLDIAVSWLESGKGLNMKFSTSWSERALPAAKEVYLRDLPACYPTSQHEAHLEKALLAFHSMVKGPAVQHFAKRLEEECKSIWNSGRQLCDAVSLTGKPCMHQRHSTENGDSPSEAMQKTHSSGYVFLHACACGRSRRLRSDPFDFEAANVTFNRFSDCDNFLPVFQLPGVSITGPIQPSSWSLIRVGGAKYYEPSKGLLQSGFYPTQKFLFKWKINTRIRKTPNDLTENIMLRGSLVKSFMDSKVEPNVNVNLKRADVAQLKSGDSQPGIDNERNSSENIAEDKKSISGRGLPNFTLRKPFSEVVAGSSGPDVGFPPLQQRIHSSPGMDKGIKQNKDVNNYERGCVTVDNRGFKNSENIISLSKKSDEISGNEHSDSDSFLRIGTNVVPMNVNSLEKTKNTLLKQTLIYIGFEHECPHGHRFLLNPEHLKELGSSYATIKKSHTPVQGAACNLAGPQRYGKSDCHGKSHDSVSSANATFSSKERNLDKLKDAVSGGSMYSDDQSNCTRRMTSNNLTSVSATVSNSVKDLEKGVKYIGIEDNGSGFFMLNRDLPIFMNCPHCKLSKNEKDPPNVKFSGMISQLQRIFVVTPPFPTVLATHPVIQFEESCLPPSVPGRQQKLQFALGCQVVLPPESFLTLRLPFVYGVQLDDGSLHPLNPLQHQPEATAWIIGGTTLQILSKSGSLDEGFQT

Homology

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BLAST of CmaCh02G013770 vs. ExPASy Swiss-Prot
Match: Q8VE18 (Protein SMG8 OS=Mus musculus OX=10090 GN=Smg8 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-18
Identity = 126/567 (22.22%), Postives = 215/567 (37.92%), Query Frame = 0


Query: 147 EEHDFGDLQ------GMLFMFSVCHVIIYIQEGLRFDTNILKKFRALQSAKHVLTPFIKS 206
           E H+F   Q       +L++FSVCH+++ +     FD    + FRAL   +  + P +K+
Sbjct: 184 ETHEFWKHQEKLQCLSLLYLFSVCHILLLVHPTCSFDITYDRVFRALDGLRQKVLPLLKT 243

Query: 207 RATPPLPSRLHSSSASRSVGSAAVSNNSSPIRSGSILTRNASGISVMSGLGSYTSLFPGQ 266
            A    P                                          +G    L    
Sbjct: 244 -AIKDCP------------------------------------------VGKDWKLNCRP 303

Query: 267 CTPVILFIFIDDFSDGPMASSNVEGIDTISINQSPSSDSISRPNLPVKGSGSVVVLARPV 326
           C P +LF+F             + G   +   + P S   + P+ P K S          
Sbjct: 304 CPPRLLFLF------------QLNGALKV---EPPRSQDTAHPDKPKKHSP--------- 363

Query: 327 SKSEGGFRKKLQSSLEAQIRFLIKKCRTLSGSETSHAGS-RGGSASSSAPLFSLDSSKAV 386
                  +++LQ +LE QI  + +K R L+    +   +     A       S +     
Sbjct: 364 -------KRRLQHALEDQIYRIFRKSRVLTNQSINCLFTVPANQAFVYIVPGSQEEDPIG 423

Query: 387 VLVDKSANRTAESLDFATSLVEDVLNGKATSDSLLLESHGQ---------SASREDIV-- 446
           +L+D+  +      D  + LV   L+G     ++   S  Q         S+S   +V  
Sbjct: 424 MLLDQLRSHCTVK-DPESLLVPAPLSGPRRYQAMRQHSRQQLSFHIDSSTSSSSGQLVDF 483

Query: 447 SLREFIYRQSDILRGRGGLVHSTSSGSAGGVGMVAVAAAAAAASAASGKAFTTPELPSME 506
           +LREF+++  +++  + G   S                             +  ELP+ +
Sbjct: 484 TLREFLWQHVELVLSKKGFDDSVGRNPQP----------------------SHFELPTYQ 543

Query: 507 IWLSSSQQILQGILCAKGGCIDEVEISKRKPRHRHIPSALIEGNALKGLDPLDIAVSWLE 566
            W+S++ ++ +  +  K     E ++          P+  +    L        ++  LE
Sbjct: 544 KWISAAAKLYEVAIDGK-----EEDLGS--------PTGELTSKILS-------SIKVLE 603

Query: 567 SGKGLNMKFSTSWSERALPAAKEVYLRDLPACYPTSQHEAHLEKALLAFHSMVKGPAVQH 626
               ++ KFS +  ++ALP A   Y  +LP  Y  + H+  L +AL  +    +GPA   
Sbjct: 604 GFLDIDTKFSENRCQKALPMAHSAYQSNLPHNYTMTVHKNQLAQALRVYSQHARGPAFHK 633

Query: 627 FAKRLEEECKSIWNSGRQLCDAVSLTGKPCMHQRHSTENGDSPSEAMQKT----HSSGYV 686
           +A +L E+C   W++G QLC+  SLT + C+H+ HS        EA +      H+S   
Sbjct: 664 YAMQLHEDCYKFWSNGHQLCEERSLTDQHCVHKFHSLPKSGEKPEADRNPPVLYHNSRAR 633

Query: 687 FLHACACGRSRRLRSDPFDFEAANVTF 692
              AC CGR +  R DPFD +AAN  F
Sbjct: 724 STGACNCGRKQAPRDDPFDIKAANYDF 633

[Close]

BLAST of CmaCh02G013770 vs. ExPASy Swiss-Prot
Match: A1A4J7 (Protein SMG8 OS=Bos taurus OX=9913 GN=SMG8 PE=2 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-18
Identity = 128/567 (22.57%), Postives = 208/567 (36.68%), Query Frame = 0


Query: 147 EEHDFGDLQ------GMLFMFSVCHVIIYIQEGLRFDTNILKKFRALQSAKHVLTPFIKS 206
           E H+F   Q       +L++FSVCH+++ +     FD    + FRAL   +  + P +K+
Sbjct: 192 EAHEFWKHQEKVQCLSLLYLFSVCHILLLVHPTCSFDITYDRVFRALDGLRQKVLPLLKT 251

Query: 207 RATPPLPSRLHSSSASRSVGSAAVSNNSSPIRSGSILTRNASGISVMSGLGSYTSLFPGQ 266
            A    P                                          +G    L    
Sbjct: 252 -AIKDCP------------------------------------------VGKDWKLNCRP 311

Query: 267 CTPVILFIFIDDFSDGPMASSNVEGIDTISINQSPSSDSISRPNLPVKGSGSVVVLARPV 326
           C P +LF+F             + G   +   + P +   + P+ P K S          
Sbjct: 312 CPPRLLFLF------------QLNGALKV---EPPRNQDPAHPDKPKKHSP--------- 371

Query: 327 SKSEGGFRKKLQSSLEAQIRFLIKKCRTLSGSETSHAGS-RGGSASSSAPLFSLDSSKAV 386
                  +++LQ +LE QI  + +K R L+    +   +     A       S +     
Sbjct: 372 -------KRRLQHALEDQIYRIFRKSRVLTNQSINCLFTVPANQAFVYIVPGSQEEDPVG 431

Query: 387 VLVDKSANRTAESLDFATSLVEDVLNGKATSDSLLLESHGQSASREDIVS---------- 446
           +L+D+  +      D  + LV   L+G      +   S  Q +   D  S          
Sbjct: 432 MLLDQLKSHCTVK-DPESLLVPAPLSGSRRYQVMRQHSRQQLSFHTDTSSSSSSGQLVDF 491

Query: 447 -LREFIYRQSDILRGRGGLVHSTSSGSAGGVGMVAVAAAAAAASAASGKAFTTPELPSME 506
            LREF+++  +++  + G   S                             +  ELP+ +
Sbjct: 492 TLREFLWQHVELVLSKKGFDDSVGRNPQP----------------------SHFELPTYQ 551

Query: 507 IWLSSSQQILQGILCAKGGCIDEVEISKRKPRHRHIPSALIEGNALKGLDPLDIAVSWLE 566
            W+S++ ++ +         ID  E     P        L     L+G   LDI      
Sbjct: 552 KWISAASKLYE-------VAIDGKEEDPASPTGELTSKILSSIKVLEGF--LDI------ 611

Query: 567 SGKGLNMKFSTSWSERALPAAKEVYLRDLPACYPTSQHEAHLEKALLAFHSMVKGPAVQH 626
                + KFS +  ++ALP A   Y  +LP  Y  + H+  L +AL  +    +GPA   
Sbjct: 612 -----DTKFSENRCQKALPMAHSAYQSNLPHNYTMTVHKNQLAQALRVYSQHARGPAFHK 641

Query: 627 FAKRLEEECKSIWNSGRQLCDAVSLTGKPCMHQRHSTENGDSPSEAMQKT----HSSGYV 686
           +A +L E+C   W++G QLC+  SLT + C+H+ HS        EA +      H+S   
Sbjct: 672 YAMQLHEDCYKFWSNGHQLCEERSLTDQHCVHKFHSLPKSGEKPEADRNPPVLYHNSRAR 641

Query: 687 FLHACACGRSRRLRSDPFDFEAANVTF 692
              AC CGR +  R DPFD +AAN  F
Sbjct: 732 STGACNCGRKQAPRDDPFDIKAANYDF 641

[Close]

BLAST of CmaCh02G013770 vs. ExPASy Swiss-Prot
Match: Q8ND04 (Protein SMG8 OS=Homo sapiens OX=9606 GN=SMG8 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 7.5e-18
Identity = 124/567 (21.87%), Postives = 215/567 (37.92%), Query Frame = 0


Query: 147 EEHDFGDLQ------GMLFMFSVCHVIIYIQEGLRFDTNILKKFRALQSAKHVLTPFIKS 206
           E H+F   Q       +L++FSVCH+++ +     FD    + FRAL   +  + P +K+
Sbjct: 184 EAHEFWKHQEKLQCLSLLYLFSVCHILLLVHPTCSFDITYDRVFRALDGLRQKVLPLLKT 243

Query: 207 RATPPLPSRLHSSSASRSVGSAAVSNNSSPIRSGSILTRNASGISVMSGLGSYTSLFPGQ 266
            A    P                                          +G    L    
Sbjct: 244 -AIKDCP------------------------------------------VGKDWKLNCRP 303

Query: 267 CTPVILFIFIDDFSDGPMASSNVEGIDTISINQSPSSDSISRPNLPVKGSGSVVVLARPV 326
           C P +LF+F             + G   +   + P +   + P+ P K S          
Sbjct: 304 CPPRLLFLF------------QLNGALKV---EPPRNQDPAHPDKPKKHSP--------- 363

Query: 327 SKSEGGFRKKLQSSLEAQIRFLIKKCRTLSGSETSHAGS-RGGSASSSAPLFSLDSSKAV 386
                  +++LQ +LE QI  + +K R L+    +   +     A       S +     
Sbjct: 364 -------KRRLQHALEDQIYRIFRKSRVLTNQSINCLFTVPANQAFVYIVPGSQEEDPVG 423

Query: 387 VLVDKSANRTAESLDFATSLVEDVLNGKATSD----------SLLLESHGQSASREDI-V 446
           +L+D+  +      D  + LV   L+G               S  ++S   S+S + +  
Sbjct: 424 MLLDQLRSHCTVK-DPESLLVPAPLSGPRRYQVMRQHSRQQLSFHIDSSSSSSSGQLVDF 483

Query: 447 SLREFIYRQSDILRGRGGLVHSTSSGSAGGVGMVAVAAAAAAASAASGKAFTTPELPSME 506
           +LREF+++  +++  + G   S                             +  ELP+ +
Sbjct: 484 TLREFLWQHVELVLSKKGFDDSVGRNPQP----------------------SHFELPTYQ 543

Query: 507 IWLSSSQQILQGILCAKGGCIDEVEISKRKPRHRHIPSALIEGNALKGLDPLDIAVSWLE 566
            W+S++ ++ +  +  K     E ++          P+  +    L        ++  LE
Sbjct: 544 KWISAASKLYEVAIDGK-----EEDLGS--------PTGELTSKILS-------SIKVLE 603

Query: 567 SGKGLNMKFSTSWSERALPAAKEVYLRDLPACYPTSQHEAHLEKALLAFHSMVKGPAVQH 626
               ++ KFS +  ++ALP A   Y  +LP  Y  + H+  L +AL  +    +GPA   
Sbjct: 604 GFLDIDTKFSENRCQKALPMAHSAYQSNLPHNYTMTVHKNQLAQALRVYSQHARGPAFHK 633

Query: 627 FAKRLEEECKSIWNSGRQLCDAVSLTGKPCMHQRHSTENGDSPSEAMQKT----HSSGYV 686
           +A +L E+C   W++G QLC+  SLT + C+H+ HS        EA +      H+S   
Sbjct: 664 YAMQLHEDCYKFWSNGHQLCEERSLTDQHCVHKFHSLPKSGEKPEADRNPPVLYHNSRAR 633

Query: 687 FLHACACGRSRRLRSDPFDFEAANVTF 692
              AC CGR +  R DPFD +AAN  F
Sbjct: 724 STGACNCGRKQAPRDDPFDIKAANYDF 633

[Close]

BLAST of CmaCh02G013770 vs. ExPASy Swiss-Prot
Match: B0W730 (Protein SMG8 OS=Culex quinquefasciatus OX=7176 GN=CPIJ003128 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.5e-15
Identity = 47/139 (33.81%), Postives = 71/139 (51.08%), Query Frame = 0


Query: 553 LNMKFSTSWSERALPAAKEVYLRDLPACYPTSQHEAHLEKALLAFHSMVKGPAVQHFAKR 612
           ++ +F     E  L  A   Y   LP  Y ++ HE   E+A   F    +GP V+   ++
Sbjct: 389 IDERFFAEICEHGLELAMVNYKDMLPHHYSSTFHEKKYEQAHELFTRYARGPEVERHEQK 448

Query: 613 LEEECKSIWNSGRQLCDAVSLTGKPCMHQRHSTENGDSPSEAMQKTHSSGYVFLHACACG 672
           L++ C SIW +G+Q C+  SL G PC   +H  ++   P+E     HSSG +F+ AC CG
Sbjct: 449 LKDYCDSIWLNGKQQCEYPSLRGNPCALGKHKVKD---PTE-----HSSGVIFVSACNCG 508

Query: 673 RSRRLRSDPFDFEAANVTF 692
           R++  R DP+     N  F
Sbjct: 509 RTQGHREDPYTIRQGNYDF 519

[Close]

BLAST of CmaCh02G013770 vs. ExPASy Swiss-Prot
Match: B4GH42 (Protein SMG8 OS=Drosophila persimilis OX=7234 GN=GL17013 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.9e-14
Identity = 44/136 (32.35%), Postives = 61/136 (44.85%), Query Frame = 0


Query: 556 KFSTSWSERALPAAKEVYLRDLPACYPTSQHEAHLEKALLAFHSMVKGPAVQHFAKRLEE 615
           KF     E  L    E Y +  PA Y +S H+  L +A LAF    +GP  +    ++  
Sbjct: 397 KFWAHLCEIGLKMGIEAYKKAAPAIYGSSMHQQLLAEATLAFEEEGRGPPAEASIAKMTA 456

Query: 616 ECKSIWNSGRQLCDAVSLTGKPCMHQRHSTENGDSPSEAMQKTHSSGYVFLHACACGRSR 675
            C   W  GRQ C+ +SL  +PC            P E     H+SG + + +C CGR++
Sbjct: 457 TCLRHWQDGRQQCEQLSLRSQPC----------TQPKEMPHDKHNSGVIHVSSCNCGRTQ 516

Query: 676 RLRSDPFDFEAANVTF 692
             R DPF    AN  F
Sbjct: 517 GRREDPFSLRQANYEF 522

The following BLAST results are available for this feature:

BLAST of CmaCh02G013770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VE18	1.5e-18	22.22	Protein SMG8 OS=Mus musculus OX=10090 GN=Smg8 PE=1 SV=1	[more]
A1A4J7	2.0e-18	22.57	Protein SMG8 OS=Bos taurus OX=9913 GN=SMG8 PE=2 SV=2	[more]
Q8ND04	7.5e-18	21.87	Protein SMG8 OS=Homo sapiens OX=9606 GN=SMG8 PE=1 SV=1	[more]
B0W730	3.5e-15	33.81	Protein SMG8 OS=Culex quinquefasciatus OX=7176 GN=CPIJ003128 PE=3 SV=1	[more]
B4GH42	3.9e-14	32.35	Protein SMG8 OS=Drosophila persimilis OX=7234 GN=GL17013 PE=3 SV=1	[more]

BLAST of CmaCh02G013770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019354	Smg8/Smg9	PFAM	PF10220	Smg8_Smg9	coord: 60..201 e-value: 1.5E-10 score: 40.1 coord: 554..692 e-value: 1.3E-36 score: 126.3 coord: 1085..1194 e-value: 1.6E-7 score: 30.1 coord: 718..769 e-value: 1.9E-6 score: 26.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 799..831
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 205..226
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..226
IPR028802	Protein SMG8	PANTHER	PTHR13091	AMPLIFIED IN BREAST CANCER 2-RELATED	coord: 56..1221

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G013770.1	CmaCh02G013770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay