CmaCh02G012830 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G012830
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	AvrRpt-cleavage domain-containing protein
Location	Cma_Chr02: 7525941 .. 7527457 (+)
RNA-Seq Expression	CmaCh02G012830
Synteny	CmaCh02G012830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCAGGTCTTCCACCTTCCCCTCTCCTCTTGAGACTCCATGGATACTCGAGCGGAGGTCAGCATTTCAAACTCTTTTCTCGCTCGAATCTTTCTCTCTCTCTAAATATTCTTTAAAAATAAAATAAAAATTATCTTCTGATTCAAATTTTTGATCTTCCATTCTATTTTTTTTAAAAGTTTTTATTGTTTAGATTACGCTTTTGAATCTTCTCATTTTAATTCATGTACTTTTGAATCTTGTAAAGGTTTATAAGCTACTTTGGAGTAAGAACTCAACAAAATATTGAATGAAAAATCATTGTAGTAATGGTCGAACATCATAACGATGAACACTTACTTTGATTAAGTCTAAAAATAACGATATGCAAATAGGTAACTTTTCATCCAATGTTGTAAGCTTTTTTATACCATGGTAGTTTCAATACATCTACGAAGGACATATTTGTAAGTGATCTTGAAATGATTGAGATCCTCTTTACACTACTAAAAATATGTTTAAAAGAATGTTTCCGAGTAATTTTGAGTACAACAAAGTTATTTTCACCATTAATAAGAGAAACAAATTTAAAGTATTTTATAAGATCCCACATCAGTGGGAGAAAAGATAATTTCTTACGAGAGTGTAGAAACCTCTCCCTAAAAGACGCATTTTAAAATTATGAAGGTAACGACATTACATAACGAGTTAAAGCAGACAATATCTACTAACGGTGGACTTGGACGGTTACAATTCTTTCTATAACGACCAATTTTTTTCCTTTTTTTTTTCCTTTTTTACCCTTTTTTTACCGTAATTCAAGAGAATCCTTGTATTTTATTAGAAAAAAGCACCAAAATGGATACAAATCAATCAAAATCACAAATTAAAAAGCTGAAAGTTTTGTTGGTGTGTGTGCGTACAGAAAAACAATAGGTGGAAATCTGTACCAGAGTTTGGAGGGTGGGATCACAACGCACCTGGGGCAAGCAATTATTCTGTTGTATTCTCTCAAGCTCGTGCAAATAGGAAACAGCAAAAAACTGACTTAACTGAGTTCAAAAGAGCTAGCCTTGGAAATGAGAGGGAGATGATGGCAATGACAGATAAACATCTTCGCCAACAGAACCACCACCACCATCGCCACCACCGCCACCACAGCCACCACAGCCGCTATGAACACCACCCACAATATCAACATCGTCTTCGCCCCCACCAGCACGACCCTGTTGTCCCGGTAAGCACTTTCATATGCTGCATCGCCTGTTCTTTTCCTACCTTAATCTCTAAAACAGATCTTTAGCTGACTAATACAAACTTTAACTCAATCAAGCAAAGCTAAATTGAACAATAAATTGCATACATACATCTAATCCTTGCTCTTTTATTTCTCTTATTCAGCAGAAGAAAAAGAAGATTCTGACCTACATCAATTGTTGTATCAGGCCTTGATATGCGACAAAGGCGACCCACTCCTCTATGTTTTAGTCAAATCACGCTGTTTATCTGAATCTTTTTTCCCTGGCATGAAAATGTAG

mRNA sequence

TTGCAGGTCTTCCACCTTCCCCTCTCCTCTTGAGACTCCATGGATACTCGAGCGGAGAAAAACAATAGGTGGAAATCTGTACCAGAGTTTGGAGGGTGGGATCACAACGCACCTGGGGCAAGCAATTATTCTGTTGTATTCTCTCAAGCTCGTGCAAATAGGAAACAGCAAAAAACTGACTTAACTGAGTTCAAAAGAGCTAGCCTTGGAAATGAGAGGGAGATGATGGCAATGACAGATAAACATCTTCGCCAACAGAACCACCACCACCATCGCCACCACCGCCACCACAGCCACCACAGCCGCTATGAACACCACCCACAATATCAACATCGTCTTCGCCCCCACCAGCACGACCCTGTTGTCCCGGCCTTGATATGCGACAAAGGCGACCCACTCCTCTATGTTTTAGTCAAATCACGCTGTTTATCTGAATCTTTTTTCCCTGGCATGAAAATGTAG

Coding sequence (CDS)

ATGGATACTCGAGCGGAGAAAAACAATAGGTGGAAATCTGTACCAGAGTTTGGAGGGTGGGATCACAACGCACCTGGGGCAAGCAATTATTCTGTTGTATTCTCTCAAGCTCGTGCAAATAGGAAACAGCAAAAAACTGACTTAACTGAGTTCAAAAGAGCTAGCCTTGGAAATGAGAGGGAGATGATGGCAATGACAGATAAACATCTTCGCCAACAGAACCACCACCACCATCGCCACCACCGCCACCACAGCCACCACAGCCGCTATGAACACCACCCACAATATCAACATCGTCTTCGCCCCCACCAGCACGACCCTGTTGTCCCGGCCTTGATATGCGACAAAGGCGACCCACTCCTCTATGTTTTAGTCAAATCACGCTGTTTATCTGAATCTTTTTTCCCTGGCATGAAAATGTAG

Protein sequence

MDTRAEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMTDKHLRQQNHHHHRHHRHHSHHSRYEHHPQYQHRLRPHQHDPVVPALICDKGDPLLYVLVKSRCLSESFFPGMKM

Homology

[Close]

BLAST of CmaCh02G012830 vs. TAIR 10
Match: AT5G19473.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 61.2 bits (147), Expect = 7.5e-10
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 1  MDTRAEKNNRWKSVPEFGGWDHNAPG-ASNYSVVFSQARANRKQQKTDLTEFKRASLGNE 60
          MD R E N  W  VP+FGGWD   P  A+NYSVVFS+ARANRKQ K  +   + +SLG+E
Sbjct: 1  MDKRRE-NAAWTPVPQFGGWDQKGPNDATNYSVVFSKARANRKQNKAGV---RHSSLGSE 60

Query: 61 REMMAMTDKHLRQQNHHHHRHHRHHS 86
          +E+M         + +H   HHRH +
Sbjct: 61 QELMVSV------RRNHQQLHHRHET 76

[Close]

BLAST of CmaCh02G012830 vs. TAIR 10
Match: AT5G09960.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 4.7e-04
Identity = 36/96 (37.50%), Postives = 48/96 (50.00%), Query Frame = 0


Query: 2  DTRAEKNNRWKSVPEFGGWDHNAPGA-SNYSVVFSQARANRKQQKTDLTEFKRASLGNER 61
          D R EKN  W SVP+FG WD    G   +YS+ F++ R  RKQ K D +   RASLGNE 
Sbjct: 3  DDRKEKNTPWLSVPQFGDWDQKGGGTMPDYSMDFTKIREMRKQNKRDPS---RASLGNEE 62

Query: 62 EMMAMTDK--------HLRQQNHHHHRHHRHHSHHS 89
          E++   +          ++ +N        HH  HS
Sbjct: 63 ELIKPPESATSTAELTTVQSENQREFSPSHHHQPHS 95

The following BLAST results are available for this feature:

BLAST of CmaCh02G012830 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh02G012830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19473.1	7.5e-10	47.67	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G09960.1	4.7e-04	37.50	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 12..42 e-value: 5.8E-8 score: 31.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..95
None	No IPR available	PANTHER	PTHR33882	PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR AVRRPT-CLEAVAGE: CLEAVAGE SITE PROTEIN	coord: 1..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G012830.1	CmaCh02G012830.1	mRNA