CmaCh02G012760 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G012760
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Phospholipase A2 family protein
Location	Cma_Chr02: 7487177 .. 7488573 (-)
RNA-Seq Expression	CmaCh02G012760
Synteny	CmaCh02G012760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTTGGAATTTCTTCATAAATTTCCATGGTTCTGGGCCCAAAAAAGCAATGATTTGGGTCCAATCCTGAAATCTTCTGACGCCATTGGGGAGCAAGGCCATCAAAATACTCGTTTTGATTTCAGGATCTGGGGATTTTCCCTTCTTTCGTTTCTTCCTTGGGAAGATAATGCCAATTCCCGAGATATCATTCTAGCAAAAACAACTATTAATAGGAACTTGAAAAGGCAAGTGAAACGTGGTAGACGAACTGAGAACCGTGATGGAGAAGCTCCTTTACGGTTCAAGCCATATGTGTGTAAAGTTCCATGGCATACTGGTGTAAGAGCGTTTTTTTCTCAGCTGTTTCCGCGTTATGGACATTACTGTGGTCCAAATTGGTCTAGTGGGAAAGACAATGGGTCTCTCGTTTGGGATAAACGACCAATTGATTGGCTGGATTTCTGCTGTTATTGCCATGATATTGGTTATGACACTCATAGTCAAGGAGAGTTGTTAAAGGCTGATATGGCATTTCTCGAGTGCTTAGAAAGGCCTAATATGGCTACGAAGGGAGATGCTCATATTGCTACTCTTTATCGAACCATGTGTGTCTCAGGTACGCCCGAGCTTCACTTATTTGGGTTGTCTTTTGTAAGTGTCTTGATTCTTGTATGCCACATTTCCACACACCACGTGATTTTGAAATGGTCAAGGTCTGTCATGTTCAAAATCATTCCCAAACATGCTGTTAATCATTCAAAATCAAATTTCATCATATGAACACTGTTTGAAGGAGTAAAGCCAAACATTAAAACGATTATATGAAATTCACTTATAAATAAATCATTTTCACTACCATCACTCCAAACATGTTCTGTAAATGTGACAGGTCTGAAGAATTTTCTAATTCCTTATAGAAGGCATCTGATTCAGCTTCAGTCTCTCCCTCACCAACCTGCAATTCAGTTTGGATGGCTTAGCAATTTGAAATGGTTTAGTTGGAACTCGCAAAGAGCTGAACAAAAGCATCCCAAAATGTGATAGATACTCAGTAGTTACTGTATGAGCCATTTCTCTTCATCACTACGTTTTACCTGAGCATCTCTCATGTACATATATATATATATACACAAAATCCCATTGCCTTATTTTGTAACACATTAATGTACATTGGTAAGTTTTAAATTTCTGGTAACTGCTAGTGTAGTGGCTGTAGGGTTGACATTTATGCTACCATAGGAACCCTTATGTATGGACCAATGGGAAAGGCTTCTGCTACTAAATCCTTGCTAGCTAAGTAAGGATTTCCTAATGAAATGAAAAATGAGAATCATGGTAGTATCCTATTTGAATATTATTACACCGTGCTACTCCACAATTGTGCCTTTAGATGTATGAATATGTGAATATTT

mRNA sequence

ATGAACTTGGAATTTCTTCATAAATTTCCATGGTTCTGGGCCCAAAAAAGCAATGATTTGGGTCCAATCCTGAAATCTTCTGACGCCATTGGGGAGCAAGGCCATCAAAATACTCGTTTTGATTTCAGGATCTGGGGATTTTCCCTTCTTTCGTTTCTTCCTTGGGAAGATAATGCCAATTCCCGAGATATCATTCTAGCAAAAACAACTATTAATAGGAACTTGAAAAGGCAAGTGAAACGTGGTAGACGAACTGAGAACCGTGATGGAGAAGCTCCTTTACGGTTCAAGCCATATGTGTGTAAAGTTCCATGGCATACTGGTGTAAGAGCGTTTTTTTCTCAGCTGTTTCCGCGTTATGGACATTACTGTGGTCCAAATTGGTCTAGTGGGAAAGACAATGGGTCTCTCGTTTGGGATAAACGACCAATTGATTGGCTGGATTTCTGCTGTTATTGCCATGATATTGGTTATGACACTCATAGTCAAGGAGAGTTGTTAAAGGCTGATATGGCATTTCTCGAGTGCTTAGAAAGGCCTAATATGGCTACGAAGGGAGATGCTCATATTGCTACTCTTTATCGAACCATGTGTGTCTCAGGTCTGAAGAATTTTCTAATTCCTTATAGAAGGCATCTGATTCAGCTTCAGTCTCTCCCTCACCAACCTGCAATTCAGTTTGGATGGCTTAGCAATTTGAAATGGTTTAGTTGGAACTCGCAAAGAGCTGAACAAAAGCATCCCAAAATGTGATAGATACTCAGTAGTTACTGTATGAGCCATTTCTCTTCATCACTACGTTTTACCTGAGCATCTCTCATGTACATATATATATATATACACAAAATCCCATTGCCTTATTTTGTAACACATTAATGTACATTGGTAAGTTTTAAATTTCTGGTAACTGCTAGTGTAGTGGCTGTAGGGTTGACATTTATGCTACCATAGGAACCCTTATGTATGGACCAATGGGAAAGGCTTCTGCTACTAAATCCTTGCTAGCTAAGTAAGGATTTCCTAATGAAATGAAAAATGAGAATCATGGTAGTATCCTATTTGAATATTATTACACCGTGCTACTCCACAATTGTGCCTTTAGATGTATGAATATGTGAATATTT

Coding sequence (CDS)

ATGAACTTGGAATTTCTTCATAAATTTCCATGGTTCTGGGCCCAAAAAAGCAATGATTTGGGTCCAATCCTGAAATCTTCTGACGCCATTGGGGAGCAAGGCCATCAAAATACTCGTTTTGATTTCAGGATCTGGGGATTTTCCCTTCTTTCGTTTCTTCCTTGGGAAGATAATGCCAATTCCCGAGATATCATTCTAGCAAAAACAACTATTAATAGGAACTTGAAAAGGCAAGTGAAACGTGGTAGACGAACTGAGAACCGTGATGGAGAAGCTCCTTTACGGTTCAAGCCATATGTGTGTAAAGTTCCATGGCATACTGGTGTAAGAGCGTTTTTTTCTCAGCTGTTTCCGCGTTATGGACATTACTGTGGTCCAAATTGGTCTAGTGGGAAAGACAATGGGTCTCTCGTTTGGGATAAACGACCAATTGATTGGCTGGATTTCTGCTGTTATTGCCATGATATTGGTTATGACACTCATAGTCAAGGAGAGTTGTTAAAGGCTGATATGGCATTTCTCGAGTGCTTAGAAAGGCCTAATATGGCTACGAAGGGAGATGCTCATATTGCTACTCTTTATCGAACCATGTGTGTCTCAGGTCTGAAGAATTTTCTAATTCCTTATAGAAGGCATCTGATTCAGCTTCAGTCTCTCCCTCACCAACCTGCAATTCAGTTTGGATGGCTTAGCAATTTGAAATGGTTTAGTTGGAACTCGCAAAGAGCTGAACAAAAGCATCCCAAAATGTGA

Protein sequence

MNLEFLHKFPWFWAQKSNDLGPILKSSDAIGEQGHQNTRFDFRIWGFSLLSFLPWEDNANSRDIILAKTTINRNLKRQVKRGRRTENRDGEAPLRFKPYVCKVPWHTGVRAFFSQLFPRYGHYCGPNWSSGKDNGSLVWDKRPIDWLDFCCYCHDIGYDTHSQGELLKADMAFLECLERPNMATKGDAHIATLYRTMCVSGLKNFLIPYRRHLIQLQSLPHQPAIQFGWLSNLKWFSWNSQRAEQKHPKM

Homology

[Close]

BLAST of CmaCh02G012760 vs. TAIR 10
Match: AT4G29070.1 (Phospholipase A2 family protein )

HSP 1 Score: 261.9 bits (668), Expect = 5.2e-70
Identity = 124/206 (60.19%), Postives = 148/206 (71.84%), Query Frame = 0


Query: 40  FDFRIWGF-SLLSFLPWEDNANSRDIILAKTTINRNLKRQVKRGRRTENRDGEAPLRFKP 99
           FD +IW + S  S LPW  +AN+ D     TTINR LKR     R + +       RF+P
Sbjct: 57  FDIKIWTWSSFSSVLPW--SANASDGKQKPTTINRGLKRHALSRRSSRSNGVNTVYRFRP 116

Query: 100 YVCKVPWHTGVRAFFSQLFPRYGHYCGPNWSSGKDNGSLVWDKRPIDWLDFCCYCHDIGY 159
           YV KVPWHTG RAF SQLFPRYGHYCGPNWSSGKD GS+VWD+RPIDWLD CCYCHDIGY
Sbjct: 117 YVSKVPWHTGTRAFLSQLFPRYGHYCGPNWSSGKDGGSMVWDQRPIDWLDHCCYCHDIGY 176

Query: 160 DTHSQGELLKADMAFLECLE-RPNMATKGDAHIATLYRTMCVSGLKNFLIPYRRHLIQLQ 219
           DTH Q ELLKADMAFLECLE    + T+GDA +A  Y+TMC++GLK+ LIPYR +L+++Q
Sbjct: 177 DTHDQAELLKADMAFLECLESNKRVVTRGDAQVAHFYKTMCITGLKSILIPYRSYLVKIQ 236

Query: 220 SLPHQPAIQFGWL-SNLKWFSWNSQR 243
               Q  + FGW+ SNL   SW+ Q+
Sbjct: 237 Y--GQNLLDFGWIVSNLSKRSWSFQK 258

[Close]

BLAST of CmaCh02G012760 vs. TAIR 10
Match: AT4G29070.2 (Phospholipase A2 family protein )

HSP 1 Score: 261.9 bits (668), Expect = 5.2e-70
Identity = 124/206 (60.19%), Postives = 148/206 (71.84%), Query Frame = 0


Query: 40  FDFRIWGF-SLLSFLPWEDNANSRDIILAKTTINRNLKRQVKRGRRTENRDGEAPLRFKP 99
           FD +IW + S  S LPW  +AN+ D     TTINR LKR     R + +       RF+P
Sbjct: 57  FDIKIWTWSSFSSVLPW--SANASDGKQKPTTINRGLKRHALSRRSSRSNGVNTVYRFRP 116

Query: 100 YVCKVPWHTGVRAFFSQLFPRYGHYCGPNWSSGKDNGSLVWDKRPIDWLDFCCYCHDIGY 159
           YV KVPWHTG RAF SQLFPRYGHYCGPNWSSGKD GS+VWD+RPIDWLD CCYCHDIGY
Sbjct: 117 YVSKVPWHTGTRAFLSQLFPRYGHYCGPNWSSGKDGGSMVWDQRPIDWLDHCCYCHDIGY 176

Query: 160 DTHSQGELLKADMAFLECLE-RPNMATKGDAHIATLYRTMCVSGLKNFLIPYRRHLIQLQ 219
           DTH Q ELLKADMAFLECLE    + T+GDA +A  Y+TMC++GLK+ LIPYR +L+++Q
Sbjct: 177 DTHDQAELLKADMAFLECLESNKRVVTRGDAQVAHFYKTMCITGLKSILIPYRSYLVKIQ 236

Query: 220 SLPHQPAIQFGWL-SNLKWFSWNSQR 243
               Q  + FGW+ SNL   SW+ Q+
Sbjct: 237 Y--GQNLLDFGWIVSNLSKRSWSFQK 258

The following BLAST results are available for this feature:

BLAST of CmaCh02G012760 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh02G012760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29070.1	5.2e-70	60.19	Phospholipase A2 family protein	[more]
AT4G29070.2	5.2e-70	60.19	Phospholipase A2 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036444	Phospholipase A2 domain superfamily	GENE3D	1.20.90.10	Phospholipase A2 domain	coord: 105..208 e-value: 3.6E-20 score: 73.9
IPR036444	Phospholipase A2 domain superfamily	SUPERFAMILY	48619	Phospholipase A2, PLA2	coord: 105..178
None	No IPR available	PANTHER	PTHR37246	OS07G0658000 PROTEIN	coord: 1..242

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G012760.1	CmaCh02G012760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050482	arachidonic acid secretion
biological_process	GO:0006644	phospholipid metabolic process
molecular_function	GO:0004623	phospholipase A2 activity