CmaCh02G012750 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G012750
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RING-type domain-containing protein
Location	Cma_Chr02: 7483171 .. 7486332 (+)
RNA-Seq Expression	CmaCh02G012750
Synteny	CmaCh02G012750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGATCGCCGTTAGAGAATATTCTCGAGCATCTTTTTTTTCTTCTCTTTTGCTTCAGAATAATTCTTCAGCATCTCCTTTCATTTCAAGTTTCGATTTCTGCTGAATAACTGTTGTTCTGGGTTCTGTGTGATCTAATTTATAAAGCGAGAAGAATCGGAGGTGAAACCCTCGTGTTCTCGCCATGGCTTCTTCGGGAATCTCTACTGAAAGCGCCGAATTGTCTGATGCGGTTCAAATACTGGAAGTTTGCAACCAGGTTTTAATCTATCTTTTCACTTCCGAAGTTGTTACACTTCTTGCGTAAAACTTGGCGCGAGAAATGGTTGTTTTTGTGTTGAGAGTTCGAATTGGAAGTATCGTTGATCTAATCTTGTTTTCTAGATTTGCGCTGGTCAAGGGTTAATTGAAGTGTTATCGTCGGTTTAGTCTTATTTTATTTCATTTTCAAGATTTTCGTGGCGTCGATAAGCGTATTTCTGCTTTTTAATATCAAGGAAGTACGTGTTCTAAATGAAAGGATTTGATGTGCGTGTTTTCTTTTTTTTACTCTGAGGACCCGTAGGAAGCGGGAGCTATTGTTAACATTCATTGATTTCCGTTATCCGATTGCCTGCTAATAGATCACTGTTGTTTTGAAATTGTGAATTTGGTCACCTGCGCATGCTATTTTATTTTCCAATGAAAGTTCTTAACTCCTGCCCTTGGCGTTGCATATTGTTGAAGTGTCTGTTTTCAAACATTAGTCATTTGCATAAATGTATTTTGAGGATTGCTAAGTTGCTGAACTTCTCTGTTCAGATTGAAATGGGAAAGAAGGTAGAGATTCACGGAACGGGGCATGGGAGTCATGATGGGGTTTGTGCAATTTGCTTAAATAAGATAGCTCTCCAAGAAACTGCCTTAGTGAGGGGTTGCGAGCATGCCTATTGGTTTGTTCTGATTGATTAATCTTTCATCTATGTATTAATAGTTTTTATAGCACGACTTTCATCTGCTTTACATTAGGTAATTTGTTGATCCGTTCCTTTTCTGTATTTTGTATGGGAATCTTTTTTGCAGTCATATGTTGACGTTCTATAGATGGTGCAATTCTTATGCTGCATTTATCATATATATTTCATTTCATTGTGGTTCTATGCTTGAATTGGAGTTGGAGTTTTAAGATCTTGCGAACATATTCCTGGGACTCCGCTAAACTTTATAGGAGAAAATTCATTGTATCCATATTGCTATTGGTACAATGTTTCTAATTGTGCTTCAGGTTGCTGGGATTTAATGGAAGAGGTATGCTATTTTAGATTTATAGCCCAAGTATCTTGGAGTCGGAGAAAATGTATGGTTCAGAGTCTGATGGTTAATCTGTTAATTCTCGTCTTATTTAGTTTGTTAATAATTAATTATTGATTATTGAAGTTAGAATGCTTGCTTGGTGAGACTGGGATAGAAACCTGTTGTACTCGGTACTCAGTGACTTATTGTGAGCCTGTGAATCTTATAGATGTCGGCTTTGGTAACGTGTTTGTATTCTACATAGGTTGGCTACTTGTTAAATCGGACACATATCAAATACTGTGTTGAACATTTATGGAGTGCAATAGACATGAATCAGACGCATCTCGAACAATTATTAGGCATTTGAACTAAGTATTGAAACATATGTTGAACAAGGCTGGGATGTTTAGAAAATGTCAATGTCCGTGCTAGCGTCTATGCTTCTTTGTTATTAGCCGATTACTCTTTCATCACCTCCAATTTGTCATCACATACTCGAAGCTTTTGGTGTCGGTTGCAAAGTTTAATTTTATGTTTTATTACTTGGTGTGGGAACATTTCCTCTATGACTATTGCAGAGAACACTTTATTTAGTTTTCACTTTCAGCTTAGGATCTTATCAGTAATAATTAAACCAAACAAAAAATGAAGTGGCAAATGGTCAAGTGAATTGTCTATTGTTTTCCAACCACTGAAGTATTACAAATATTTTCCTTGCTTTTTTTGAGGAATAGTGTGATCTTTTACAGTTTATACATATGGGCATTATATTCTTTTATTAATGCATTGTTTTACTTTCATGAAGTGCGACTTGCATCCTTCGATGGGCCTCATATAATAAGAATCCGACGTGTCCACAATGTAAACATCCATTTGAGTTCCTGATTGTGCATCGTTCTCTTGATGGGAGGTATGCCTCTTCATCATTCTATGGACCTTTTATAGTTTAGAGTCGCAGTATCATTTTAAATTAATGTTCTTACTTTTCTATCCATTTACTGTCTGCGTATTGTAGCGTCCATGACTTTATGTTTGAGGAGAGCGTATGCTTGCTTCTGAGAGCTTCATGGTATGTACCTCTGATCGTTGAAGATCGGGAAGAAACCTATGAAGATCCTGATGAGTACTACCCTTATGAGGATGACGACGAAGAGTTTGAGGAAGCTTACCTGGGTGCATCGTCGAGTCTCCGCATCGGCAATCGAAGGTGGGGAGACAATGGATATGTGAGGGGAGGTCGACAAGAAGCACGACCAGTTATTAGGTCAACTGTTCCAGTGCATGCAGGAGCTAGTTCATCACGTGAGCCTATAAAAAAAGATGCTTCCAAAGATAAAACAGGTCGACGAGCTAAAAGGGCCTTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAACATCAGGAACATCTAGCTAGGTTTGGGCGAAAGTGATTCAAGTTCCTGTATATAACAAGCCTTGCGCTTAGACCCTGTGTACAGTTCCAAGATTCAATTTACTTTCACAGTTGAAGTACCTTACCTCCCCTGAGCCTGGTGGCTCCCAATTAAATCTATGGTGGGGACTATACTTCAAGGTATAAAGGACATCCCAATGAGTTCTTTGTATGAACATCGAATCTCAAAATCAATCATAGAACAGTTGTTATGGTCGGATTTTCTGTTCTTTTTTAGATGAAGTAGTCAACCACTTTCATATGTGTGCAAGTTTTACGTGAAGGACACCAAAAGCCTTTGAGTTGTAGCTCAAGTAGGTGAAATCTAAGGCATTGGACCTCGGTGAATTGTAGCTCAAAGGATATCAACAGCCAACTTTAGACTCAAACTTGAAGTCCAAGCACATTAGTGTACATGTGATGTGGTTGGGAAGTAAATCAACTTTTCCT

mRNA sequence

TGGATCGCCGTTAGAGAATATTCTCGAGCATCTTTTTTTTCTTCTCTTTTGCTTCAGAATAATTCTTCAGCATCTCCTTTCATTTCAAGTTTCGATTTCTGCTGAATAACTGTTGTTCTGGGTTCTGTGTGATCTAATTTATAAAGCGAGAAGAATCGGAGGTGAAACCCTCGTGTTCTCGCCATGGCTTCTTCGGGAATCTCTACTGAAAGCGCCGAATTGTCTGATGCGGTTCAAATACTGGAAGTTTGCAACCAGATTGAAATGGGAAAGAAGGTAGAGATTCACGGAACGGGGCATGGGAGTCATGATGGGGTTTGTGCAATTTGCTTAAATAAGATAGCTCTCCAAGAAACTGCCTTAGTGAGGGGTTGCGAGCATGCCTATTGTGCGACTTGCATCCTTCGATGGGCCTCATATAATAAGAATCCGACGTGTCCACAATGTAAACATCCATTTGAGTTCCTGATTGTGCATCGTTCTCTTGATGGGAGCGTCCATGACTTTATGTTTGAGGAGAGCGTATGCTTGCTTCTGAGAGCTTCATGGTATGTACCTCTGATCGTTGAAGATCGGGAAGAAACCTATGAAGATCCTGATGAGTACTACCCTTATGAGGATGACGACGAAGAGTTTGAGGAAGCTTACCTGGGTGCATCGTCGAGTCTCCGCATCGGCAATCGAAGGTGGGGAGACAATGGATATGTGAGGGGAGGTCGACAAGAAGCACGACCAGTTATTAGGTCAACTGTTCCAGTGCATGCAGGAGCTAGTTCATCACGTGAGCCTATAAAAAAAGATGCTTCCAAAGATAAAACAGGTCGACGAGCTAAAAGGGCCTTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAACATCAGGAACATCTAGCTAGGTTTGGGCGAAAGTGATTCAAGTTCCTGTATATAACAAGCCTTGCGCTTAGACCCTGTGTACAGTTCCAAGATTCAATTTACTTTCACAGTTGAAGTACCTTACCTCCCCTGAGCCTGGTGGCTCCCAATTAAATCTATGGTGGGGACTATACTTCAAGGTATAAAGGACATCCCAATGAGTTCTTTGTATGAACATCGAATCTCAAAATCAATCATAGAACAGTTGTTATGGTCGGATTTTCTGTTCTTTTTTAGATGAAGTAGTCAACCACTTTCATATGTGTGCAAGTTTTACGTGAAGGACACCAAAAGCCTTTGAGTTGTAGCTCAAGTAGGTGAAATCTAAGGCATTGGACCTCGGTGAATTGTAGCTCAAAGGATATCAACAGCCAACTTTAGACTCAAACTTGAAGTCCAAGCACATTAGTGTACATGTGATGTGGTTGGGAAGTAAATCAACTTTTCCT

Coding sequence (CDS)

ATGGCTTCTTCGGGAATCTCTACTGAAAGCGCCGAATTGTCTGATGCGGTTCAAATACTGGAAGTTTGCAACCAGATTGAAATGGGAAAGAAGGTAGAGATTCACGGAACGGGGCATGGGAGTCATGATGGGGTTTGTGCAATTTGCTTAAATAAGATAGCTCTCCAAGAAACTGCCTTAGTGAGGGGTTGCGAGCATGCCTATTGTGCGACTTGCATCCTTCGATGGGCCTCATATAATAAGAATCCGACGTGTCCACAATGTAAACATCCATTTGAGTTCCTGATTGTGCATCGTTCTCTTGATGGGAGCGTCCATGACTTTATGTTTGAGGAGAGCGTATGCTTGCTTCTGAGAGCTTCATGGTATGTACCTCTGATCGTTGAAGATCGGGAAGAAACCTATGAAGATCCTGATGAGTACTACCCTTATGAGGATGACGACGAAGAGTTTGAGGAAGCTTACCTGGGTGCATCGTCGAGTCTCCGCATCGGCAATCGAAGGTGGGGAGACAATGGATATGTGAGGGGAGGTCGACAAGAAGCACGACCAGTTATTAGGTCAACTGTTCCAGTGCATGCAGGAGCTAGTTCATCACGTGAGCCTATAAAAAAAGATGCTTCCAAAGATAAAACAGGTCGACGAGCTAAAAGGGCCTTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAACATCAGGAACATCTAGCTAGGTTTGGGCGAAAGTGA

Protein sequence

MASSGISTESAELSDAVQILEVCNQIEMGKKVEIHGTGHGSHDGVCAICLNKIALQETALVRGCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASWYVPLIVEDREETYEDPDEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQEARPVIRSTVPVHAGASSSREPIKKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK

Homology

[Close]

BLAST of CmaCh02G012750 vs. ExPASy Swiss-Prot
Match: Q99590 (Protein SCAF11 OS=Homo sapiens OX=9606 GN=SCAF11 PE=1 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 1.9e-05
Identity = 22/60 (36.67%), Postives = 32/60 (53.33%), Query Frame = 0


Query: 46  CAICLNKIALQETALVRGCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSV 105
           C ICLN +  +E      C H +C TCIL+WA      +CP  + PF+ +    +L+G V
Sbjct: 41  CPICLNCLLEKEVGFPESCNHVFCMTCILKWA--ETLASCPIDRKPFQAVFKFSALEGYV 98

[Close]

BLAST of CmaCh02G012750 vs. TAIR 10
Match: AT5G19430.1 (RING/U-box superfamily protein )

HSP 1 Score: 260.0 bits (663), Expect = 1.9e-69
Identity = 141/245 (57.55%), Postives = 177/245 (72.24%), Query Frame = 0


Query: 12  ELSDAVQILEVCNQIEMGKKVEIHGTGHGSHDGVCAICLNKIALQETALVRGCEHAYCAT 71
           ++ D +Q L + NQ +   + EIH    G+H G CAICL++I LQETA+V+GCEH YC T
Sbjct: 12  QVIDGIQDLALQNQDKKKIQEEIHEPSFGNHGGCCAICLSEIPLQETAMVKGCEHTYCVT 71

Query: 72  CILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASWYVPLIVEDR 131
           CILRWAS  ++PTCPQCKHPF+FL VHR+LDGS+ DF+FEESVCLLLRASW+VPL V ++
Sbjct: 72  CILRWASCKESPTCPQCKHPFDFLSVHRALDGSIEDFLFEESVCLLLRASWFVPLDVVEQ 131

Query: 132 EE----TYEDPDEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQEARPVIR 191
                  ++D D  Y YED+D++ +E YL   SSLRIGNRRWG NG+VR GRQEARPV R
Sbjct: 132 ASYSHGYHDDFDIPYDYEDEDDDLDEFYL-HGSSLRIGNRRWGGNGFVRSGRQEARPVQR 191

Query: 192 -----STVPVHAGASSSREPIKKDASKDKTGRRAKRALKREAADKA----AAAKHQEHLA 244
                S+    +G+SSS    K+  + + TGRRAKRA+KREAA+KA    AAAKH+ HL 
Sbjct: 192 YSGSGSSSSSSSGSSSSEPKDKQVKTTNTTGRRAKRAMKREAANKAAEVTAAAKHEAHLV 251

[Close]

BLAST of CmaCh02G012750 vs. TAIR 10
Match: AT5G19430.2 (RING/U-box superfamily protein )

HSP 1 Score: 255.8 bits (652), Expect = 3.6e-68
Identity = 140/239 (58.58%), Postives = 173/239 (72.38%), Query Frame = 0


Query: 20  LEVCNQIEMGKKV--EIHGTGHGSHDGVCAICLNKIALQETALVRGCEHAYCATCILRWA 79
           L + + I   KK+  EIH    G+H G CAICL++I LQETA+V+GCEH YC TCILRWA
Sbjct: 3   LALLHNIRDKKKIQEEIHEPSFGNHGGCCAICLSEIPLQETAMVKGCEHTYCVTCILRWA 62

Query: 80  SYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASWYVPLIVEDREE---- 139
           S  ++PTCPQCKHPF+FL VHR+LDGS+ DF+FEESVCLLLRASW+VPL V ++      
Sbjct: 63  SCKESPTCPQCKHPFDFLSVHRALDGSIEDFLFEESVCLLLRASWFVPLDVVEQASYSHG 122

Query: 140 TYEDPDEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQEARPVIR-----S 199
            ++D D  Y YED+D++ +E YL   SSLRIGNRRWG NG+VR GRQEARPV R     S
Sbjct: 123 YHDDFDIPYDYEDEDDDLDEFYL-HGSSLRIGNRRWGGNGFVRSGRQEARPVQRYSGSGS 182

Query: 200 TVPVHAGASSSREPIKKDASKDKTGRRAKRALKREAADKA----AAAKHQEHLARFGRK 244
           +    +G+SSS    K+  + + TGRRAKRA+KREAA+KA    AAAKH+ HL R GRK
Sbjct: 183 SSSSSSGSSSSEPKDKQVKTTNTTGRRAKRAMKREAANKAAEVTAAAKHEAHLVRLGRK 240

[Close]

BLAST of CmaCh02G012750 vs. TAIR 10
Match: AT5G12310.1 (RING/U-box superfamily protein )

HSP 1 Score: 238.4 bits (607), Expect = 5.9e-63
Identity = 136/243 (55.97%), Postives = 164/243 (67.49%), Query Frame = 0


Query: 17  VQILEVCNQIEMGKKVEIHGTGHGSHDGVCAICLNKIALQETALVRGCEHAYCATCILRW 76
           V +L + +Q E       +    G+H G CAICL+ I LQETA+V+GCEHAYC TCILRW
Sbjct: 14  VDVLPLQDQDEKKTPQVFNELSFGNHGGCCAICLDTIPLQETAMVKGCEHAYCVTCILRW 73

Query: 77  ASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASWYVPLIVEDR----- 136
           ASY + PTCPQCK PF+FL VHR+LDGSV DFMFEESVCLLLRASW+ PL   +R     
Sbjct: 74  ASYKEKPTCPQCKLPFDFLNVHRALDGSVEDFMFEESVCLLLRASWFQPLEAVERVSDND 133

Query: 137 --EETYEDPDEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQEARPVIRST 196
                ++ P EY   ++DD++ +E Y+   SSLR+GNRRWGDNG+VR GRQEARPV    
Sbjct: 134 NFNYDFDIPPEYEEEDEDDDDLDEFYM-QGSSLRLGNRRWGDNGFVRAGRQEARPVQHKN 193

Query: 197 VPVHA-----GASSSREPIKKDASKDKTGRRAKRALKREAADKA----AAAKHQEHLARF 244
               A      +SSS EP K+  S   TGRRAKRA+KREAA+KA    AAAKH+  L R 
Sbjct: 194 RGGQASGSEPASSSSCEP-KEKTSSAITGRRAKRAMKREAANKAAEAVAAAKHEALLVRL 253

[Close]

BLAST of CmaCh02G012750 vs. TAIR 10
Match: AT3G30460.1 (RING/U-box superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 1.3e-04
Identity = 22/49 (44.90%), Postives = 26/49 (53.06%), Query Frame = 0


Query: 45  VCAICLNKIALQETALVRGCEHAYCATCILRWASYNKNPTCPQCKHPFE 94
           VCAIC  ++A  E      C H Y   CI  W S N+N TCP C+H  E
Sbjct: 96  VCAICREELAANERLSELPCRHYYHKECISNWLS-NRN-TCPLCRHNVE 142

The following BLAST results are available for this feature:

BLAST of CmaCh02G012750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99590	1.9e-05	36.67	Protein SCAF11 OS=Homo sapiens OX=9606 GN=SCAF11 PE=1 SV=2	[more]

BLAST of CmaCh02G012750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19430.1	1.9e-69	57.55	RING/U-box superfamily protein	[more]
AT5G19430.2	3.6e-68	58.58	RING/U-box superfamily protein	[more]
AT5G12310.1	5.9e-63	55.97	RING/U-box superfamily protein	[more]
AT3G30460.1	1.3e-04	44.90	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 46..88 e-value: 7.2E-6 score: 35.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 46..89 e-value: 1.1E-8 score: 35.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 46..89 score: 12.592549
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 29..112 e-value: 6.8E-12 score: 46.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..243
None	No IPR available	PANTHER	PTHR47361	RING/U-BOX SUPERFAMILY PROTEIN	coord: 11..243
None	No IPR available	PANTHER	PTHR47361:SF4	RING/U-BOX SUPERFAMILY PROTEIN	coord: 11..243
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 40..96
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 64..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G012750.1	CmaCh02G012750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0046872	metal ion binding