CmaCh02G012640 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G012640
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Sacchrp_dh_NADP domain-containing protein
Location	Cma_Chr02: 7408467 .. 7411361 (-)
RNA-Seq Expression	CmaCh02G012640
Synteny	CmaCh02G012640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTGAAGAGGAACTGTTATTACAGGGAACTTGCTGGTGCGGAGAAGAGCGGCAAACAATGGCGGGATCTTTGAAAAGCTTTTCTCCGATGGCCATGATCAATGCCGATACTGAACTTCTGGTTCAATTGCCTCAGAATGATTGCAATTCTAGGGTTTTGGTACTCGGAGGCACCGGTCGGGTCGGAACCTCCATTGCCATTGCTCCCTTCAAGTTCTGTCACGACCTTCAGATCGTCATGGGCGGTCGCAACAGGTGATTCTTCTGTGTTTATTTTAATTCGGCGAGTTTCATTTGTAGGTAGATTTGAATTTGACTTATTTCGATTCTTTTCATTTCTGTATCTCTAAGTTATTCCTTAAAGTTGGTTTATCCGGTGTGTTCTCTCGTTTAGATCCTTTTTCATTATGAAACTAAACTGTTGATTACCGATTGGTAATCAGTGGATTTCGAGCCTTTTCTAAATTGTGATGCATAATGATATAAGGTGCGGCGTGCTGTGAAACGGAAAAAGGTGCTGCTATGGTTGCGACAGTTGGGAGAAACTCTCGATTTGTTGAAGTCGATGCTGAGAATGTAAAATCATTGGAGGCTGCTTTGAGAGGTATACTGATTCTTCTAATTAGTTTTAAGATTTCAACAGTCGTCTTTGATTCTATTTCTTCTCCAATTCCCATTTCGTGAGTGAAATATGAAGCTCCTAGTCATACTGAGCTTTTCCTCCTTCAAATGGAGTTTTAAATTTAAAACTTAGCGGTCAAATTACAATCCAATAGTTTAATATTCTGAAACATAAAGTTGTACCCACGAGGAAATAATTTCATGCATAAAGTTTTACCTTCGAGGCTACGAAAAGAGTTGTGTGAAATGCAAGAGATCGCTGTTCAAGGAATTTTCTCTTTATCTCAAACTTTGAATAGCGGCATCCTTTTCCTTTCTTTGTTTTCATTATTATTAAAAATTCTCTGTAATTTGCGTTGCCTATTTATGGAAGTTCCAACACACATGGAGTCTCCTGCACCTGTTGACGCCTTTCTTTTTTATTGTTTAAACTACACGCCGTGATTACTCTTTTTTAAAGTTTTAGCTCTGAGTCTCTGACAAATAACATGGTATTGTCTCTAGATGTCGTGTATGGTTAATTTTTCACGACCTTTTTTTTTTGTTGACTCCAAAGACTGTCGAACGACCAGAACTTTGGTGGTTCTGATGAGCTTTTGACCTCGGTGTAAAATGCAGATGTAATTTAATATAATATCGTGGTTTATTTATATTAAGATTAGTGAAATGACATGTAGGGATCAATTCCTCACCCCCCCCTTAGTTATTTTTTATTTTCTTTCCATGGAATTATTTTGTAGTAACTGATTTTTGTGGTCAAACATAAATTTGCCCCTTTTGATTTATGAAATATGTCTATCTGGAACAAAACACGTGAAAATCTTGCACCCTAAACTAAGGGCATTCAAATCTTTAACATACTGCCACCAGGGGTGCTTAACTGAAATCTTTAGCTGTTACTACAGATGTGGATCCTGTAGTTCATACTGCTGGGTTATTCCAACAGACAGAGAAGTGCACCGTACTTGAAGCTTCCATAAATATCCAGGAAAGAGCTGTTTGCATTAAAAATCTTGCTTTTATGATCATCTATTGACGACGTTCTTTGTCTATCTGCTTACAGCCTACGTTGGTGTTTGTGATGATACAAACTATTCACAGAATGCAAAAGCTTTCAAGAATAAAGCTATGGAGGCAAACATTCCAGCTATTACAACTGCATTTATCCTGGAGTGAGCAATGGTACATAATGTACTTATCGTGCACTTTTCTTATGTTGATAGTTCTTATTATATGGTGCTGCTAAATCTCTTAGATTGAATGCAATATTCAACCAATTCATTTTCCTTGCACAAAGTATAGGAAAGATATTGTGTAAGCTAATGGGCGAGTGGTAGGTTGAAGTTGAAGTTTAGTTTTCATGGGCAATAAAAGCAACATATTCAAGGCAATGCTTCATCTAACTGACAGTCTTTTCTGTTTCACCGAGCCAGTAATGGTGGCAGAGCTAGTACGTGCTGGAGAGATGAAAGCAGGGGTGATTCCGATAGGCTAAAGAGAAGTCCCTGATAATCATGCAACTAGTGAGTAAACCTCACGACTGATGAAGCATACTTTTCCCCAATCACTTATAATTCAATACTGTATCTGTACGAAGGAGGTAAACAAACTCCCAATGCCAACAGAGAATTAACAATTTATAATCTTCCGGATTTGGTGTATTCTTTAATAACCTTTGTATTTCCTTCGAGGAACCTCTGTATTTCACGATTTTATATGAAAATGGAAGAAATCAGGGTCAAAATATTTTGATTTTTAATGCCGTCATGTTTTATATTCAGCATAACCTTCAGTTAAACTAGAAAACTTTGAGGTCGTTAGTATAACTAATTATAAAAATTGATATGGTGCGCTTTCTTCAGCAACTAAGCGTGAATTATTATCTCAGATTCTACCTGCACTGCAGGCAATGGTGGTGCTGGTCCATCTATATTAGCTACTAGTTTCTTGCTGCTGGGAGAGAAGGTGGTCGCCTATAATAAAGGTTAGTGTCAAAACTGAAACTTTGTCTATGTAATATTCGAGCACTTGACGATTTTGCTGGAGAGCGTGTATCCATGAGGGTGAGAATCAAATTTCTCTGGTGAAAGAAGTCATAGCTTTATCAACCATTTGATAATTTGATTTCTGATTTATCAGGTGTTGAAAGTAGTTGATTTATGAAGAATGCCCCTTTTTCCTTTTCTGTTTTTGGTCTAATTCTGATTAGACGAGGCTACTTCATGGATAGCAGGTGACGAGAAGGAAAGCCGTGTAGTTTATGTAAGAATGTGA

mRNA sequence

GATTGAAGAGGAACTGTTATTACAGGGAACTTGCTGGTGCGGAGAAGAGCGGCAAACAATGGCGGGATCTTTGAAAAGCTTTTCTCCGATGGCCATGATCAATGCCGATACTGAACTTCTGGTTCAATTGCCTCAGAATGATTGCAATTCTAGGGTTTTGGTACTCGGAGGCACCGGTCGGGTCGGAACCTCCATTGCCATTGCTCCCTTCAAGTTCTGTCACGACCTTCAGATCGTCATGGGCGGTCGCAACAGGTGCGGCGTGCTGTGAAACGGAAAAAGGTGCTGCTATGGTTGCGACAGTTGGGAGAAACTCTCGATTTGTTGAAGTCGATGCTGAGAATGTAAAATCATTGGAGGCTGCTTTGAGAGATGTGGATCCTGTAGTTCATACTGCTGGGTTATTCCAACAGACAGAGAAGTGCACCGTACTTGAAGCTTCCATAAATATCCAGGAAAGAGCTCCTACGTTGGTGTTTGTGATGATACAAACTATTCACAGAATGCAAAAGCTTTCAAGAATAAAGCTATGGAGGCAAACATTCCAGCTATTACAACTGCATTTATCCTGGAGTGAGCAATGTAATGGTGGCAGAGCTAGTACGTGCTGGAGAGATGAAAGCAGGGATTCTACCTGCACTGCAGGCAATGGTGGTGCTGGTCCATCTATATTAGCTACTAGTTTCTTGCTGCTGGGAGAGAAGGTGGTCGCCTATAATAAAGGTGACGAGAAGGAAAGCCGTGTAGTTTATGTAAGAATGTGA

Coding sequence (CDS)

ATGCCGATACTGAACTTCTGGTTCAATTGCCTCAGAATGATTGCAATTCTAGGGTTTTGGTACTCGGAGGCACCGGTCGGGTCGGAACCTCCATTGCCATTGCTCCCTTCAAGTTCTGTCACGACCTTCAGATCGTCATGGGCGGTCGCAACAGGTGCGGCGTGCTGTGAAACGGAAAAAGGTGCTGCTATGGTTGCGACAGTTGGGAGAAACTCTCGATTTGTTGAAGTCGATGCTGAGAATGTAAAATCATTGGAGGCTGCTTTGAGAGATGTGGATCCTGTAGTTCATACTGCTGGGTTATTCCAACAGACAGAGAAGTGCACCGTACTTGAAGCTTCCATAAATATCCAGGAAAGAGCTCCTACGTTGGTGTTTGTGATGATACAAACTATTCACAGAATGCAAAAGCTTTCAAGAATAAAGCTATGGAGGCAAACATTCCAGCTATTACAACTGCATTTATCCTGGAGTGAGCAATGTAATGGTGGCAGAGCTAGTACGTGCTGGAGAGATGAAAGCAGGGATTCTACCTGCACTGCAGGCAATGGTGGTGCTGGTCCATCTATATTAGCTACTAGTTTCTTGCTGCTGGGAGAGAAGGTGGTCGCCTATAATAAAGGTGACGAGAAGGAAAGCCGTGTAGTTTATGTAAGAATGTGA

Protein sequence

MPILNFWFNCLRMIAILGFWYSEAPVGSEPPLPLLPSSSVTTFRSSWAVATGAACCETEKGAAMVATVGRNSRFVEVDAENVKSLEAALRDVDPVVHTAGLFQQTEKCTVLEASINIQERAPTLVFVMIQTIHRMQKLSRIKLWRQTFQLLQLHLSWSEQCNGGRASTCWRDESRDSTCTAGNGGAGPSILATSFLLLGEKVVAYNKGDEKESRVVYVRM

Homology

[Close]

BLAST of CmaCh02G012640 vs. TAIR 10
Match: AT1G50450.1 (Saccharopine dehydrogenase )

HSP 1 Score: 98.2 bits (243), Expect = 8.7e-21
Identity = 70/170 (41.18%), Postives = 93/170 (54.71%), Query Frame = 0


Query: 59  EKGAAMVATVGRNSRFVEVDAENVKSLEAALRDVDPVVHTAGLFQQTEKCTVLEASINIQ 118
           EKG AMVA +G NS F +VD  + K LE +LRDVD VVH AG FQQ  +CTVLEA+I  +
Sbjct: 75  EKGEAMVAKLGENSEFSQVDINDAKMLETSLRDVDLVVHAAGPFQQAPRCTVLEAAIKTK 134

Query: 119 E-------------RAPTLVFVMIQTIHRMQKLSRIKLWRQTFQLLQLHLSWSEQCNGGR 178
                         RA +L    I     +  L+   ++     ++      +E     R
Sbjct: 135 TAYLDVCDDTSYAFRAKSLEAEAIAA--NIPALTTAGIYPGVSNVMA-----AEMVAAAR 194

Query: 179 ASTCWRDES-RDSTCTAGNGGAGPSILATSFLLLGEKVVAYNKGDEKESR 215
           +    + E  R S  TAG GGAGP+ILATSFLLLGE+V AY +G++ + R
Sbjct: 195 SEDKGKPEKLRFSYYTAGTGGAGPTILATSFLLLGEEVTAYKQGEKVKLR 237

The following BLAST results are available for this feature:

BLAST of CmaCh02G012640 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh02G012640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50450.1	8.7e-21	41.18	Saccharopine dehydrogenase	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.720		coord: 43..118 e-value: 5.7E-6 score: 28.0
None	No IPR available	PANTHER	PTHR43796:SF2	CARBOXYNORSPERMIDINE SYNTHASE	coord: 177..213
None	No IPR available	PANTHER	PTHR43796	CARBOXYNORSPERMIDINE SYNTHASE	coord: 57..116
None	No IPR available	PANTHER	PTHR43796	CARBOXYNORSPERMIDINE SYNTHASE	coord: 177..213
None	No IPR available	PANTHER	PTHR43796:SF2	CARBOXYNORSPERMIDINE SYNTHASE	coord: 57..116
IPR036291	NAD(P)-binding domain superfamily	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 53..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G012640.1	CmaCh02G012640.1	mRNA