CmaCh02G012420 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G012420
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionSequence-specific DNA binding transcription factors
LocationCma_Chr02: 7301737 .. 7303047 (+)
RNA-Seq ExpressionCmaCh02G012420
SyntenyCmaCh02G012420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGCTCTGGTCTGGGAGGCGGATTTCTGTCTGGAAATGGGGGGTTATTAGATCTGGAGTCTCCAATTCGAAGGCATCAACAGACCCAGTTGATCAATACCTCATTGACACACAGACATCACTTGAAGATGATGAATACTTTGGAAGGTGATCACCAGTCCGTTGGGATTATGGACACAAAAAGAATGGGACACAAAGATTTATCGATGACTTTCACTAAAGGGAAAGCTATTGCCTCTGGTGGCGTCACAAACAACAGTAACACGAGTGAAGAAGATGAGCCTAGTTTTACTGAGGATGGCGAGTGCACTGAATTTTTGAAGGGCAAAAAGGGCTCTCCTTGGCAGAGAATGAAGTGGACAGATGACATTGTGAGGCTTCTCATAGCAGTGGTTGCTTGTGTGGGTGATGACGGTGAGGCTGGAATGGGCTCGAAGAGAAAATCTGGTATTCTACAAAAGAAGGGAAAATGGAAAATGGTGTCGAAGATTATGATAAGTAAGGGGTGTCATGTTTCTCCCCAGCAGTGTGAGGACAAATTTAATGACTTAAACAAAAGATACAAGAGATTGAACGATATTCTTGGCAGGGGAACCAGTTGTAGAGTTGTGGAGAACCCTGCACTCATGGATTCAATGCCTCACCTCTCAAGCAAAGTCAAGGATGATGTAAGAAAAATATTAAGCTCAAAACACTTATTTTATAAGGAAATGTGTGCTTACCATAATGGACAAACAATTCCTGGTTGCCAGGATGTTGATTTCCAAGGTAAGATTTTGCCTGTTGTTAATTTCTCGGAAGGAAATAATGAGTCAGAAGAGGCTGATGACAGTGATAGTGACAGTGATGAATCAGATAATGAGGATGATCACTATCCCGAAGAAAATAGATTATGGCCGGCTCAATCTCGTGGCAGGGATAAAGCGAGTGCAGATGATGGTCCTCTTTGGTCAAATACTTCTGCACAAAATGAACTTGAAGGTCAAATTGATGTTTTTCTTTCGGATCCAACAAAGCCACAATGGGAGCGCAGAGATTGGATTAAAAAACAGATGCTACAACTTCAGGAGCAATGTGTAAGTTTCCAGGCTCAATCTTTTGAACTTGAGAAACAACGTTTCAAATGGTTAAGATATTGCAGTAAGAAGAGTAGGGATTTGGAGAGAATGAGGCTTGAAAATGAGAGGATGAAAATAGATAATGAGCGGAGAGTACTGCAACTGAAGCAGAAGGAAATGGAACTGGAATTTAAAAGGTCTGATTCATCCTTTGGGCCAACCCTTGGCATTGATAGAATTCAAGGGTGA

mRNA sequence

ATGGATAGCTCTGGTCTGGGAGGCGGATTTCTGTCTGGAAATGGGGGGTTATTAGATCTGGAGTCTCCAATTCGAAGGCATCAACAGACCCAGTTGATCAATACCTCATTGACACACAGACATCACTTGAAGATGATGAATACTTTGGAAGGTGATCACCAGTCCGTTGGGATTATGGACACAAAAAGAATGGGACACAAAGATTTATCGATGACTTTCACTAAAGGGAAAGCTATTGCCTCTGGTGGCGTCACAAACAACAGTAACACGAGTGAAGAAGATGAGCCTAGTTTTACTGAGGATGGCGAGTGCACTGAATTTTTGAAGGGCAAAAAGGGCTCTCCTTGGCAGAGAATGAAGTGGACAGATGACATTGTGAGGCTTCTCATAGCAGTGGTTGCTTGTGTGGGTGATGACGGTGAGGCTGGAATGGGCTCGAAGAGAAAATCTGGTATTCTACAAAAGAAGGGAAAATGGAAAATGGTGTCGAAGATTATGATAAGTAAGGGGTGTCATGTTTCTCCCCAGCAGTGTGAGGACAAATTTAATGACTTAAACAAAAGATACAAGAGATTGAACGATATTCTTGGCAGGGGAACCAGTTGTAGAGTTGTGGAGAACCCTGCACTCATGGATTCAATGCCTCACCTCTCAAGCAAAGTCAAGGATGATGTAAGAAAAATATTAAGCTCAAAACACTTATTTTATAAGGAAATGTGTGCTTACCATAATGGACAAACAATTCCTGGTTGCCAGGATGTTGATTTCCAAGGTAAGATTTTGCCTGTTGTTAATTTCTCGGAAGGAAATAATGAGTCAGAAGAGGCTGATGACAGTGATAGTGACAGTGATGAATCAGATAATGAGGATGATCACTATCCCGAAGAAAATAGATTATGGCCGGCTCAATCTCGTGGCAGGGATAAAGCGAGTGCAGATGATGGTCCTCTTTGGTCAAATACTTCTGCACAAAATGAACTTGAAGGTCAAATTGATGTTTTTCTTTCGGATCCAACAAAGCCACAATGGGAGCGCAGAGATTGGATTAAAAAACAGATGCTACAACTTCAGGAGCAATGTGTAAGTTTCCAGGCTCAATCTTTTGAACTTGAGAAACAACGTTTCAAATGGTTAAGATATTGCAGTAAGAAGAGTAGGGATTTGGAGAGAATGAGGCTTGAAAATGAGAGGATGAAAATAGATAATGAGCGGAGAGTACTGCAACTGAAGCAGAAGGAAATGGAACTGGAATTTAAAAGGTCTGATTCATCCTTTGGGCCAACCCTTGGCATTGATAGAATTCAAGGGTGA

Coding sequence (CDS)

ATGGATAGCTCTGGTCTGGGAGGCGGATTTCTGTCTGGAAATGGGGGGTTATTAGATCTGGAGTCTCCAATTCGAAGGCATCAACAGACCCAGTTGATCAATACCTCATTGACACACAGACATCACTTGAAGATGATGAATACTTTGGAAGGTGATCACCAGTCCGTTGGGATTATGGACACAAAAAGAATGGGACACAAAGATTTATCGATGACTTTCACTAAAGGGAAAGCTATTGCCTCTGGTGGCGTCACAAACAACAGTAACACGAGTGAAGAAGATGAGCCTAGTTTTACTGAGGATGGCGAGTGCACTGAATTTTTGAAGGGCAAAAAGGGCTCTCCTTGGCAGAGAATGAAGTGGACAGATGACATTGTGAGGCTTCTCATAGCAGTGGTTGCTTGTGTGGGTGATGACGGTGAGGCTGGAATGGGCTCGAAGAGAAAATCTGGTATTCTACAAAAGAAGGGAAAATGGAAAATGGTGTCGAAGATTATGATAAGTAAGGGGTGTCATGTTTCTCCCCAGCAGTGTGAGGACAAATTTAATGACTTAAACAAAAGATACAAGAGATTGAACGATATTCTTGGCAGGGGAACCAGTTGTAGAGTTGTGGAGAACCCTGCACTCATGGATTCAATGCCTCACCTCTCAAGCAAAGTCAAGGATGATGTAAGAAAAATATTAAGCTCAAAACACTTATTTTATAAGGAAATGTGTGCTTACCATAATGGACAAACAATTCCTGGTTGCCAGGATGTTGATTTCCAAGGTAAGATTTTGCCTGTTGTTAATTTCTCGGAAGGAAATAATGAGTCAGAAGAGGCTGATGACAGTGATAGTGACAGTGATGAATCAGATAATGAGGATGATCACTATCCCGAAGAAAATAGATTATGGCCGGCTCAATCTCGTGGCAGGGATAAAGCGAGTGCAGATGATGGTCCTCTTTGGTCAAATACTTCTGCACAAAATGAACTTGAAGGTCAAATTGATGTTTTTCTTTCGGATCCAACAAAGCCACAATGGGAGCGCAGAGATTGGATTAAAAAACAGATGCTACAACTTCAGGAGCAATGTGTAAGTTTCCAGGCTCAATCTTTTGAACTTGAGAAACAACGTTTCAAATGGTTAAGATATTGCAGTAAGAAGAGTAGGGATTTGGAGAGAATGAGGCTTGAAAATGAGAGGATGAAAATAGATAATGAGCGGAGAGTACTGCAACTGAAGCAGAAGGAAATGGAACTGGAATTTAAAAGGTCTGATTCATCCTTTGGGCCAACCCTTGGCATTGATAGAATTCAAGGGTGA

Protein sequence

MDSSGLGGGFLSGNGGLLDLESPIRRHQQTQLINTSLTHRHHLKMMNTLEGDHQSVGIMDTKRMGHKDLSMTFTKGKAIASGGVTNNSNTSEEDEPSFTEDGECTEFLKGKKGSPWQRMKWTDDIVRLLIAVVACVGDDGEAGMGSKRKSGILQKKGKWKMVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTSCRVVENPALMDSMPHLSSKVKDDVRKILSSKHLFYKEMCAYHNGQTIPGCQDVDFQGKILPVVNFSEGNNESEEADDSDSDSDESDNEDDHYPEENRLWPAQSRGRDKASADDGPLWSNTSAQNELEGQIDVFLSDPTKPQWERRDWIKKQMLQLQEQCVSFQAQSFELEKQRFKWLRYCSKKSRDLERMRLENERMKIDNERRVLQLKQKEMELEFKRSDSSFGPTLGIDRIQG
Homology
BLAST of CmaCh02G012420 vs. TAIR 10
Match: AT1G21200.1 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 285.0 bits (728), Expect = 9.9e-77
Identity = 184/452 (40.71%), Postives = 266/452 (58.85%), Query Frame = 0

Query: 1   MDSSGLGGGFL---SGNGGLLDLESPIRRHQQTQLINTSLTHRHHLKMMNTLEGDHQSVG 60
           MD +   GG +   + + G  DL+  +R H Q  +   +  HRH+       EG   ++ 
Sbjct: 1   MDGNFPQGGVVRSGASSYGGFDLQGSMRVHHQDSM---NQQHRHNPNSRPLHEGLPFTM- 60

Query: 61  IMDTKRMGHKDLSMTFTKGKAIASGGVTNNSNTSEEDEPSFTE---DGECTEFLKGKKGS 120
           +       H++ +M+ ++ +          ++ S++DEPSFTE   DG   E  +  KGS
Sbjct: 61  VTGQTCDHHQNQNMSMSEQQK----AEREKNSVSDDDEPSFTEEGGDGVHNEANRSTKGS 120

Query: 121 PWQRMKWTDDIVRLLIAVVACVGDDGEAGMGSKRKSGILQKKGKWKMVSKIMISKGCHVS 180
           PWQR+KWTD +V+LLI  V+ +GDD      S+RK  +LQKKGKWK VSK+M  +G HVS
Sbjct: 121 PWQRVKWTDKMVKLLITAVSYIGDDSSIDSSSRRKFAVLQKKGKWKSVSKVMAERGYHVS 180

Query: 181 PQQCEDKFNDLNKRYKRLNDILGRGTSCRVVENPALMDSMPHLSSKVKDDVRKILSSKHL 240
           PQQCEDKFNDLNKRYK+LND+LGRGTSC+VVENPAL+DS+ +L+ K KDDVRKI+SSKHL
Sbjct: 181 PQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLDSIGYLNDKEKDDVRKIMSSKHL 240

Query: 241 FYKEMCAYHNGQTIPGCQDVDFQGKILPVV-------NFSEGNNESEEADDSDSDSDESD 300
           FY+EMC+YHNG  +    D+  Q  +   +       N     ++ E+ DD D D D   
Sbjct: 241 FYEEMCSYHNGNRLHLPHDLALQRSLQLALRSRDDHDNDDSRKHQMEDLDDEDHDGD--G 300

Query: 301 NEDDHYPEENRLW------------PAQSRGRDKASADDG--PLWSNTSAQNELE-GQID 360
           +E D Y E++  +                + R   S +DG  P   N+   N++   QI 
Sbjct: 301 DEHDEYEEQHYAYGDCRVNHYGGGGGPLKKIRPSLSHEDGDHPSHVNSLECNKVSLPQIP 360

Query: 361 VFLSDPTKPQWE-------RRDWIKKQMLQLQEQCVSFQAQSFELEKQRFKWLRYCSKKS 418
              +D  +   E       ++ W++ + LQL+EQ +  Q +  ELEKQRF+W R+  K+ 
Sbjct: 361 FSQADVNQGGAESGRAGSVQKQWMESRTLQLEEQKLQIQVELLELEKQRFRWQRFSKKRD 420

BLAST of CmaCh02G012420 vs. TAIR 10
Match: AT3G10040.1 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 243.0 bits (619), Expect = 4.3e-64
Identity = 151/387 (39.02%), Postives = 225/387 (58.14%), Query Frame = 0

Query: 79  IASGGVTNNSNTSEEDEPSFTEDGECTEFLKGKKGSPWQRMKWTDDIVRLLIAVVACVGD 138
           I+ GG  +    S        ED   T+    +K S W RMKWTD +VRLLI  V  +GD
Sbjct: 66  ISGGGCDDEDRGSGSGSGCNPEDSAGTD--GKRKLSQWHRMKWTDTMVRLLIMAVFYIGD 125

Query: 139 DGEAGMG----SKRKS----------GILQKKGKWKMVSKIMISKGCHVSPQQCEDKFND 198
             EAG+     +K+K+          G+LQKKGKWK VS+ M+ KG  VSPQQCEDKFND
Sbjct: 126 --EAGLNDPVDAKKKTGGGGGGGGGGGMLQKKGKWKSVSRAMVEKGFSVSPQQCEDKFND 185

Query: 199 LNKRYKRLNDILGRGTSCRVVENPALMDSMPHLSSKVKDDVRKILSSKHLFYKEMCAYHN 258
           LNKRYKR+NDILG+G +CRVVEN  L++SM HL+ K+KD+V+K+L+SKHLF++EMCAYHN
Sbjct: 186 LNKRYKRVNDILGKGIACRVVENQGLLESMDHLTPKLKDEVKKLLNSKHLFFREMCAYHN 245

Query: 259 ------------------GQTIPGCQDVDFQ----GKILPVVNFSEGNNESEEADDSDSD 318
                                IP  Q   F     GK+  +    E   E E     DS+
Sbjct: 246 SCGHLGGHDQQPPQQNPISIPIPSQQQNCFHAAEAGKMARIAERVEVEEEVESDMAEDSE 305

Query: 319 SDESDNEDDHYPEENRLWPAQSRGRDKASADDGPLWSNTSAQNELEGQIDVFLSDPTKPQ 378
           S+  ++E++   ++ R+  A  R R++A++                      + D  K  
Sbjct: 306 SEMEESEEEETRKKRRISTAVKRLREEAAS---------------------VVEDVGKSV 365

Query: 379 WERRDWIKKQMLQLQEQCVSFQAQSFELEKQRFKWLRYCSKKSRDLERMRLENERMKIDN 429
           WE+++WI+++ML+++E+ + ++ +  E+EKQR KW+RY SKK R++E+ +L+N+R +++ 
Sbjct: 366 WEKKEWIRRKMLEIEEKKIGYEWEGVEMEKQRVKWMRYRSKKEREMEKAKLDNQRRRLET 425

BLAST of CmaCh02G012420 vs. TAIR 10
Match: AT1G76870.1 (BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT1G21200.1); Has 406 Blast hits to 351 proteins in 76 species: Archae - 0; Bacteria - 2; Metazoa - 137; Fungi - 14; Plants - 127; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink). )

HSP 1 Score: 231.9 bits (590), Expect = 1.0e-60
Identity = 138/332 (41.57%), Postives = 206/332 (62.05%), Query Frame = 0

Query: 91  SEEDEPS-FTEDGECTEFLKGKKGSPWQRMKWTDDIVRLLIAVVACVGDDGEAGMGSKRK 150
           SE+DE    + DG+     K K+ SPWQR+KW D +V+L+I  ++ +G+D     GS +K
Sbjct: 61  SEDDELCLLSSDGQ----NKSKENSPWQRVKWMDKMVKLMITALSYIGEDS----GSDKK 120

Query: 151 SGILQKKGKWKMVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTSCRVVENPA 210
             +LQKKGKW+ VSK+M  +G HVSPQQCEDKFNDLNKRYK+LN++LGRGTSC VVENP+
Sbjct: 121 FAVLQKKGKWRSVSKVMDERGYHVSPQQCEDKFNDLNKRYKKLNEMLGRGTSCEVVENPS 180

Query: 211 LMDSMPHLSSKVKDDVRKILSSKHLFYKEMCAYHNGQTIPGCQDVDFQGKILPVVNFSEG 270
           L+D + +L+ K KD+VR+I+SSKHLFY+EMC+YHNG  +    D   Q  +  +   + G
Sbjct: 181 LLDKIDYLNEKEKDEVRRIMSSKHLFYEEMCSYHNGNRLHLPHDPAVQRSLHLI---TLG 240

Query: 271 NNESEEADDSDSDSDESDNEDDHYPEEN----RLWPAQSRGRDKASADDGPLWSNTSAQN 330
           + +  + D+     +E  ++DD Y E++       P +   + ++  D G          
Sbjct: 241 SRDDHDNDEHGKHQNEDLDDDDDYEEDHDGALSDRPLKRLRQSQSHEDVGHPNKGYDVPC 300

Query: 331 ELEGQIDV---FLSDPTKPQWERRDWIKKQMLQLQEQCVSFQAQSFELEKQRFKWLRYCS 390
               Q DV      D  K    +R  I+ + L+L+ + +  QA+  ELE+Q+FKW  +  
Sbjct: 301 LPRSQADVNRGISLDSRKAAGLQRQQIESKSLELEGRKLQIQAEMMELERQQFKWEVFSK 360

Query: 391 KKSRDLERMRLENERMKIDNERRVLQLKQKEM 415
           ++ + L +MR+ENERMK++NER  L+LK+ E+
Sbjct: 361 RREQKLAKMRMENERMKLENERMSLELKRIEL 381

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT1G21200.19.9e-7740.71sequence-specific DNA binding transcription factors [more]
AT3G10040.14.3e-6439.02sequence-specific DNA binding transcription factors [more]
AT1G76870.11.0e-6041.57BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transc... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 390..413
NoneNo IPR availableGENE3D1.10.10.60coord: 121..191
e-value: 2.6E-12
score: 48.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 292..312
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 271..291
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 266..321
NoneNo IPR availablePANTHERPTHR46327F16F4.11 PROTEIN-RELATEDcoord: 13..421
NoneNo IPR availablePANTHERPTHR46327:SF9TRANSCRIPTION FACTOR TRIHELIX FAMILY-RELATEDcoord: 13..421
IPR044822Myb/SANT-like DNA-binding domain 4PFAMPF13837Myb_DNA-bind_4coord: 118..241
e-value: 2.0E-19
score: 69.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G012420.1CmaCh02G012420.1mRNA