CmaCh02G012070 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G012070
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Protein of unknown function, DUF538
Location	Cma_Chr02: 7141753 .. 7143875 (-)
RNA-Seq Expression	CmaCh02G012070
Synteny	CmaCh02G012070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCGACCCCTAAATCTCATCTGGGTGTAATTTTTTTCACCTTCATCGCCTTCTTGGCTTCGATTTCTGAGCTTGCTGTGGCCGGATCCGATGCTCCCACTGTCTATGATATCCTCCCCCAATATGGGCTTCCGAGTGGCCTCTTACCTGACTCTGTCGTCGATTACTCCCTCTCTTCCGATGGTCAATTTGTTGTTCATTTGGCCAAACCCTGTTATATCAACTTCGATTACTTGGTTTATTACGACAAGACCATTACTGGGAAGCTCAAATACGGCTCCATCACTGATCTCGATGGTATCGAGGTTCGGAAATTCTTGATGTGGCTCGATGTGAAGGAAATCAGAGTCGATTTGCCGCCTTCTGATAACATCTACTTCCAAGTTGGATTTATCAATAAGAAGCTCGACATCGATCAGTTTAAGACCGTTCATTCATGCCGGGACGATGGTTTGGGCTCTTGTCTTGACTCCTGGAAACGGATTCTTGAGGTATATTCTTAGCCGCCATTCGCTATTGTCAAATCTTTCCTGCTTTGGATTATCTACTTTCGAATCTTGTTTAACTCATGGGTATCTGTTAGTAATCGCTCTGGTTTGTTCATGATTAGAACTCTTTGATTTTGGTACTTTTTATTGTTCTTCCATTTGATGCAGTAAAATTTGTTCAAGATGTTTGACAGATTCTTTGGACTTGAGAGAAATCTTGCATATAAAACACGATGGCGTGTATGAACTCGATTATTAAATGAAACCAGTTCAAGAGAATTTAGACCTTTGTTCTGTCAAAATTTATATTTGGTACCCCACATCGAATATTTCTTTTCAAGCGTTGATTTTTGGTGAGCGCATCATTCTGTGTCTTGAAGTTATCATCTTGTTGGGCAGCCTTTGTCATGACGTGATCAGGATTTTTTTGGTAGAAAATTGTTTGCTCATCTTTTTAAATAGGCAATGAACGAATTTATTGACCAAAACACATAAACGATATACAAAAAGGAGAAGGAATAACTCCAAATGGTCAAGGGAATTACGAAAAGGACTTCCACCCAAGGGAAAATTGTTTGGTTGTCATTCAGGATGTTTGATGGCTTTGATCCAATTTTATAGAACCAAACCATTTTGAAGCATTTTAATGTCTATACCCCTTTTGAATTCCTTTGCTATAAGAAAATTGAACCTCTGAACAATAATCTGGACCTTGAGGAGCCTCGTCTTTCGCTCTTCTCAGTTCTCTGAAATGTTCTGAGATAACGTCAGTGTTTAATTAGTTTTTGACCTTCATATGAAGAAAATGAGGAATATGAACTCAAATTGGCTGATCTTGGCTCTGTCCAGGTTGATTCAGTTAAGTTTCGGCGAGTTGCATCACACCTTTATCGAGTTTAAATTATATTTCATAGTCATTAGGCTGCAACTGTCATATATTGTTATTCAGGACTTGTCACAACTTCAGTGAACAGGTGATCAGATTAAGCTAGACTGCCTTCATTTTGTCTCCTCTATTCTGTTGATGTTATTGTTTCAAATTCTGCTGATGTGATCTTCCAATGAAATGGCCATTTTGGTTGATCGATAATCCAATATGCTAGTTTCAACGAATCTCGTTCTTTAAATTTCATAGCTGCTTGGATTTGGATCAACTCATTGCACATGGCCACTCTGTTTCTCTCACTTATTGCTTGATCACATTGAAACTTCTCGAACATGTTGCTGTTAATTTATATTGGTCTTTGGCATTAGCTAGCTTATCCAGGGGGAATTGTGCAAGATATGCTCAATTACAGGGTTGCTTTGTCTTTTAAGCACCAATATGCTTCACTAGGTTCAAAAAGCTTACTCACTTGTTGCAAATAAGTTAAAAGAATGTTACAAAGTGAGTATGGTTGGAGAGTGATTCTATCATGCTAATACTTTTTCATTGGTGATCACAGCTCCCAACTCCAGTTGATGACATCCAGATGCTAGTCACCGAGTAGCTCTTCGTCCCTTGTCCGAGTTTTTGACCTTCTTGCTGCATTATCTAAATGATCAGAAGAAGAAGTTTAGTAGTTTTCGGTACGTGGTCTCAGTTTAGACGGCAAAATATGAATGTCTATCTTGGTAGACCTATGATGTAA

mRNA sequence

ATGGCGCCGACCCCTAAATCTCATCTGGGTGTAATTTTTTTCACCTTCATCGCCTTCTTGGCTTCGATTTCTGAGCTTGCTGTGGCCGGATCCGATGCTCCCACTGTCTATGATATCCTCCCCCAATATGGGCTTCCGAGTGGCCTCTTACCTGACTCTGTCGTCGATTACTCCCTCTCTTCCGATGGTCAATTTGTTGTTCATTTGGCCAAACCCTGTTATATCAACTTCGATTACTTGGTTTATTACGACAAGACCATTACTGGGAAGCTCAAATACGGCTCCATCACTGATCTCGATGGTATCGAGGTTCGGAAATTCTTGATGTGGCTCGATGTGAAGGAAATCAGAGTCGATTTGCCGCCTTCTGATAACATCTACTTCCAAGTTGGATTTATCAATAAGAAGCTCGACATCGATCAGTTTAAGACCGTTCATTCATGCCGGGACGATGGTTTGGGCTCTTGTCTTGACTCCTGGAAACGGATTCTTGAGCTCCCAACTCCAGTTGATGACATCCAGATGCTAGTCACCGAAAGAAGAAGTTTAGTAGTTTTCGGTACGTGGTCTCAGTTTAGACGGCAAAATATGAATGTCTATCTTGGTAGACCTATGATGTAA

Coding sequence (CDS)

ATGGCGCCGACCCCTAAATCTCATCTGGGTGTAATTTTTTTCACCTTCATCGCCTTCTTGGCTTCGATTTCTGAGCTTGCTGTGGCCGGATCCGATGCTCCCACTGTCTATGATATCCTCCCCCAATATGGGCTTCCGAGTGGCCTCTTACCTGACTCTGTCGTCGATTACTCCCTCTCTTCCGATGGTCAATTTGTTGTTCATTTGGCCAAACCCTGTTATATCAACTTCGATTACTTGGTTTATTACGACAAGACCATTACTGGGAAGCTCAAATACGGCTCCATCACTGATCTCGATGGTATCGAGGTTCGGAAATTCTTGATGTGGCTCGATGTGAAGGAAATCAGAGTCGATTTGCCGCCTTCTGATAACATCTACTTCCAAGTTGGATTTATCAATAAGAAGCTCGACATCGATCAGTTTAAGACCGTTCATTCATGCCGGGACGATGGTTTGGGCTCTTGTCTTGACTCCTGGAAACGGATTCTTGAGCTCCCAACTCCAGTTGATGACATCCAGATGCTAGTCACCGAAAGAAGAAGTTTAGTAGTTTTCGGTACGTGGTCTCAGTTTAGACGGCAAAATATGAATGTCTATCTTGGTAGACCTATGATGTAA

Protein sequence

MAPTPKSHLGVIFFTFIAFLASISELAVAGSDAPTVYDILPQYGLPSGLLPDSVVDYSLSSDGQFVVHLAKPCYINFDYLVYYDKTITGKLKYGSITDLDGIEVRKFLMWLDVKEIRVDLPPSDNIYFQVGFINKKLDIDQFKTVHSCRDDGLGSCLDSWKRILELPTPVDDIQMLVTERRSLVVFGTWSQFRRQNMNVYLGRPMM

Homology

[Close]

BLAST of CmaCh02G012070 vs. TAIR 10
Match: AT5G19860.1 (Protein of unknown function, DUF538 )

HSP 1 Score: 217.6 bits (553), Expect = 9.2e-57
Identity = 104/174 (59.77%), Postives = 134/174 (77.01%), Query Frame = 0


Query: 9   LGVIFFTFIAFLASISELAVAGSDA-PTVYDILPQYGLPSGLLPDSVVDYSLSSDGQFVV 68
           + +  F+   F  +   L     D+  TVY++LP+YGLPSGLLPD+V D++LS DG+FVV
Sbjct: 8   ISIFIFSLTLFTTTTHSLNEPDPDSISTVYELLPKYGLPSGLLPDTVTDFTLSDDGRFVV 67

Query: 69  HLAKPCYINFDYLVYYDKTITGKLKYGSITDLDGIEVRKFLMWLDVKEIRVDLPPSDNIY 128
           HL   C I FDYLV+YDKTI+G++ YGSIT+L GI+V+KF +WLDV EI+VDLPPSD+IY
Sbjct: 68  HLPNSCEIEFDYLVHYDKTISGRIGYGSITELKGIQVKKFFIWLDVDEIKVDLPPSDSIY 127

Query: 129 FQVGFINKKLDIDQFKTVHSCRDDGL-GSCLDSWKRILEL-PTPVDDIQMLVTE 180
           F+VGFINKKLDIDQFKT+HSC D+G+ GSC DSWK  LE     +D+ +ML+TE
Sbjct: 128 FKVGFINKKLDIDQFKTIHSCHDNGVSGSCGDSWKSFLEKGQGMMDEAEMLITE 181

[Close]

BLAST of CmaCh02G012070 vs. TAIR 10
Match: AT1G55265.1 (Protein of unknown function, DUF538 )

HSP 1 Score: 115.2 bits (287), Expect = 6.4e-26
Identity = 52/117 (44.44%), Postives = 74/117 (63.25%), Query Frame = 0


Query: 33  APTVYDILPQYGLPSGLLPDSVVDYSLSSDGQFVVHLAKPCYINF-DYLVYYDKTITGKL 92
           A  ++D+LP+YG P GLLP++V  Y++S DG F V L   CY+ F D LV+Y K I GKL
Sbjct: 51  ADDIHDLLPRYGFPKGLLPNNVKSYTISDDGDFTVDLISSCYVKFSDQLVFYGKNIAGKL 110

Query: 93  KYGSITDLDGIEVRKFLMWLDVKEIRVDLPPSDNIYFQVGFINKKLDIDQFKTVHSC 149
            YGS+ D+ GI+ ++  +WL +  +  D P S  + F VGF++K L    F+ V SC
Sbjct: 111 SYGSVKDVRGIQAKEAFLWLPITAMESD-PSSATVVFSVGFVSKTLPASMFENVPSC 166

[Close]

BLAST of CmaCh02G012070 vs. TAIR 10
Match: AT5G54530.1 (Protein of unknown function, DUF538 )

HSP 1 Score: 109.0 bits (271), Expect = 4.6e-24
Identity = 49/128 (38.28%), Postives = 77/128 (60.16%), Query Frame = 0


Query: 26  LAVAGSDAPTVYDILPQYGLPSGLLPDSVVDYSLSSDGQFVVHLAKPCYINFDYLVYYDK 85
           L+++    PTV+D+L   GLP+GLLP  V  Y L +DG+  V LA PCY  F+  V+++ 
Sbjct: 19  LSLSSPSYPTVHDVLRSEGLPAGLLPQEVDSYILHNDGRLEVFLAAPCYAKFETNVHFEA 78

Query: 86  TITGKLKYGSITDLDGIEVRKFLMWLDVKEIRVDLPPSDNIYFQVGFINKKLDIDQFKTV 145
            + G L YGS+  ++G+  ++  +WL VK+I V+ P S  I F +G   K+L +  F+  
Sbjct: 79  VVRGNLSYGSLVGVEGLSQKELFLWLQVKDIVVENPNSGVIVFDIGVAFKQLSLSLFEDP 138

Query: 146 HSCRDDGL 154
             C+ DG+
Sbjct: 139 PKCKPDGV 146

[Close]

BLAST of CmaCh02G012070 vs. TAIR 10
Match: AT3G07470.1 (Protein of unknown function, DUF538 )

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-21
Identity = 51/138 (36.96%), Postives = 80/138 (57.97%), Query Frame = 0


Query: 12  IFFTFIAFLASISELAVAGSDAPTVYDILPQYGLPSGLLPDSVVDYSLSSD-GQFVVHLA 71
           I F  +  +A IS ++ A S+  T+Y+IL   GLPSG+ P  V +++   + G+F V+L 
Sbjct: 8   IAFLCLVLVAGIS-ISTAISETETIYEILLANGLPSGIFPKGVREFTFDVETGRFSVYLN 67

Query: 72  KPCYINFDYLVYYDKTITGKLKYGSITDLDGIEVRKFLMWLDVKEIRVDLPPSDNIYFQV 131
           + C   ++  ++YD  ITG +    I+DL GI  ++  +W  VK IRVD+P S  IYF V
Sbjct: 68  QACEAKYETEIHYDANITGTIGSAQISDLSGISAQELFLWFPVKGIRVDVPSSGLIYFDV 127

Query: 132 GFINKKLDIDQFKTVHSC 149
           G + K+  +  F+T   C
Sbjct: 128 GVVRKQYSLSLFETPRDC 144

[Close]

BLAST of CmaCh02G012070 vs. TAIR 10
Match: AT3G07460.2 (Protein of unknown function, DUF538 )

HSP 1 Score: 92.8 bits (229), Expect = 3.4e-19
Identity = 54/170 (31.76%), Postives = 92/170 (54.12%), Query Frame = 0


Query: 9   LGVIFFTFIAF-LASISELAVAGSDAPTVYDILPQYGLPSGLLPDSVVDYSLSSD-GQFV 68
           L ++  T + F LA+   ++   ++  ++ +IL   GLP GL P  V  ++++ + G+F 
Sbjct: 2   LRIVQITLLCFVLAAGISISAVIAENESIDEILLANGLPLGLFPKGVKGFTVNGETGRFS 61

Query: 69  VHLAKPCYINFDYLVYYDKTITGKLKYGSITDLDGIEVRKFLMWLDVKEIRVDLPPSDNI 128
           V+L + C   ++  ++YD+ ++G + Y  I DL GI  ++  +WL VK IRVD+P S  I
Sbjct: 62  VYLNQSCQAKYETELHYDEIVSGTIGYAQIRDLSGISAQELFLWLQVKGIRVDVPSSGLI 121

Query: 129 YFQVGFINKKLDIDQFKTVHSC---RDDG--LGSCLD---------SWKR 163
           +F VG + K+  +  F+T   C   R D   +GS  D         SWK+
Sbjct: 122 FFDVGVLRKQYSLSLFETPRDCVAVRGDAEFIGSVFDVAIVSSRSNSWKK 171

The following BLAST results are available for this feature:

BLAST of CmaCh02G012070 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh02G012070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19860.1	9.2e-57	59.77	Protein of unknown function, DUF538	[more]
AT1G55265.1	6.4e-26	44.44	Protein of unknown function, DUF538	[more]
AT5G54530.1	4.6e-24	38.28	Protein of unknown function, DUF538	[more]
AT3G07470.1	2.1e-21	36.96	Protein of unknown function, DUF538	[more]
AT3G07460.2	3.4e-19	31.76	Protein of unknown function, DUF538	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036758	At5g01610-like superfamily	GENE3D	2.30.240.10		coord: 22..150 e-value: 8.7E-36 score: 124.7
IPR036758	At5g01610-like superfamily	SUPERFAMILY	141562	At5g01610-like	coord: 11..149
IPR007493	Protein of unknown function DUF538	PFAM	PF04398	DUF538	coord: 36..143 e-value: 8.6E-32 score: 109.9
IPR007493	Protein of unknown function DUF538	PANTHER	PTHR31676	T31J12.3 PROTEIN-RELATED	coord: 14..177
None	No IPR available	PANTHER	PTHR31676:SF149	SUBFAMILY NOT NAMED	coord: 14..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G012070.1	CmaCh02G012070.1	mRNA