CmaCh02G011010 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G011010
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	R3 MYB transcription factor
Location	Cma_Chr02: 6544424 .. 6545205 (-)
RNA-Seq Expression	CmaCh02G011010
Synteny	CmaCh02G011010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTTTCTCTTTCTCTCTCTAAGATTTCAATATTTTAATCCCTTCTGTAAGTTGTCAACTACAAGTCTACCAACCCAACAAGTCAAACCAACAAACTTACTCCCCAAAGTTTGGTGGGCAGAAGAAAATATAGGAAGCATTCACATAAACTTAAATTTTCCTGTGGAAATTTCAGATCTCTCTATCATAGTTTTTCCTAAAATTCTTTTCATTCCCAGTTCTCTATCTTCCTGTTTTTGTGCTGCCTCTAATCTTTGGGGGAAACATGGACAACCATCGTAACCAGCAACAAGCTAAAACAACTCCACTAGAGTCTGAAGGTTCCTTTCATCTACTTGATGTTCTATTTTTTCTCTCTCCAATTACTCATCATGAAGTTGGTCTCTTCTTCATGATTTTCTCACCATTTTTTAAATTTGTGGCCTGTTATCTAACAGAAGTCAGCAGCACTAGGTGGCAGTTTATAACGATGACAGCACAGGAGGAAGATCTCATCCATAGAATGCATAAGCTGATTGGAGATAGGTAAGTTGTGTTCAAAGCAAAACCCAGATTTACAGAATTCTCCCACATTTCTAAGCAATAATGGAGATAGATTCTACTCTTTTTCTTACTTGACTGCTTTCCAATTACCTGTAGTATCAAAGTTTCTAAGAAAATGGCTTTCCATTTCAGGTGGGATCTGATAGCAGGCAGAATTCCAGGGCGTAAACCAGAAGAAATAGAGAGGTATTGGATAATGACTCACCTTGAAGGGTTTGCAGTGAGAAGAAGAGGGTGA

mRNA sequence

TCTCTTTCTCTTTCTCTCTCTAAGATTTCAATATTTTAATCCCTTCTGTAAGTTGTCAACTACAAGTCTACCAACCCAACAAGTCAAACCAACAAACTTACTCCCCAAAGTTTGGTGGGCAGAAGAAAATATAGGAAGCATTCACATAAACTTAAATTTTCCTGTGGAAATTTCAGATCTCTCTATCATAGTTTTTCCTAAAATTCTTTTCATTCCCAGTTCTCTATCTTCCTGTTTTTGTGCTGCCTCTAATCTTTGGGGGAAACATGGACAACCATCGTAACCAGCAACAAGCTAAAACAACTCCACTAGAGTCTGAAGAAGTCAGCAGCACTAGGTGGCAGTTTATAACGATGACAGCACAGGAGGAAGATCTCATCCATAGAATGCATAAGCTGATTGGAGATAGTATCAAAGTTTCTAAGAAAATGGCTTTCCATTTCAGGTGGGATCTGATAGCAGGCAGAATTCCAGGGCGTAAACCAGAAGAAATAGAGAGGTATTGGATAATGACTCACCTTGAAGGGTTTGCAGTGAGAAGAAGAGGGTGA

Coding sequence (CDS)

ATGGACAACCATCGTAACCAGCAACAAGCTAAAACAACTCCACTAGAGTCTGAAGAAGTCAGCAGCACTAGGTGGCAGTTTATAACGATGACAGCACAGGAGGAAGATCTCATCCATAGAATGCATAAGCTGATTGGAGATAGTATCAAAGTTTCTAAGAAAATGGCTTTCCATTTCAGGTGGGATCTGATAGCAGGCAGAATTCCAGGGCGTAAACCAGAAGAAATAGAGAGGTATTGGATAATGACTCACCTTGAAGGGTTTGCAGTGAGAAGAAGAGGGTGA

Protein sequence

MDNHRNQQQAKTTPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDSIKVSKKMAFHFRWDLIAGRIPGRKPEEIERYWIMTHLEGFAVRRRG

Homology

[Close]

BLAST of CmaCh02G011010 vs. ExPASy Swiss-Prot
Match: Q8GV05 (Transcription factor TRY OS=Arabidopsis thaliana OX=3702 GN=TRY PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.3e-22
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 0


Query: 2  DNHRNQQQAKTTPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDSIKVSKKMAFHFRW 61
          D  R ++Q K    +SEEVSS  W+FI MT QEEDLI RM++L+GD            RW
Sbjct: 5  DRRRRRKQHKIALHDSEEVSSIEWEFINMTEQEEDLIFRMYRLVGD------------RW 64

Query: 62 DLIAGRIPGRKPEEIERYWIMTHLEGFAVRRR 94
          DLIAGR+PGR+PEEIERYWIM + EGFA +RR
Sbjct: 65 DLIAGRVPGRQPEEIERYWIMRNSEGFADKRR 84

[Close]

BLAST of CmaCh02G011010 vs. ExPASy Swiss-Prot
Match: O22059 (Transcription factor CPC OS=Arabidopsis thaliana OX=3702 GN=CPC PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.9e-18
Identity = 48/89 (53.93%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 5  RNQQQAKTTPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDSIKVSKKMAFHFRWDLI 64
          R ++Q+K     SEEVSS  W+ + M+ +EEDLI RM+KL+GD            RW+LI
Sbjct: 13 RRRRQSKAKASCSEEVSSIEWEAVKMSEEEEDLISRMYKLVGD------------RWELI 72

Query: 65 AGRIPGRKPEEIERYWIMTHLEGFAVRRR 94
          AGRIPGR PEEIERYW+M H   FA RRR
Sbjct: 73 AGRIPGRTPEEIERYWLMKHGVVFANRRR 89

[Close]

BLAST of CmaCh02G011010 vs. ExPASy Swiss-Prot
Match: B3H4X8 (MYB-like transcription factor TCL2 OS=Arabidopsis thaliana OX=3702 GN=TCL2 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-16
Identity = 43/89 (48.31%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 5  RNQQQAKTTPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDSIKVSKKMAFHFRWDLI 64
          R+++Q+K T  ++ EV+S +W+FI MT QEEDLI RMH+L+GD            RWDLI
Sbjct: 11 RSRKQSKFTLGDTAEVNSVKWEFINMTEQEEDLIFRMHRLVGD------------RWDLI 70

Query: 65 AGRIPGRKPEEIERYWIMTHLEGFAVRRR 94
          AGR+ GR+ ++IERYWIM + +  + +RR
Sbjct: 71 AGRVVGREAKDIERYWIMRNCDHCSHKRR 87

[Close]

BLAST of CmaCh02G011010 vs. ExPASy Swiss-Prot
Match: Q84RD1 (MYB-like transcription factor ETC2 OS=Arabidopsis thaliana OX=3702 GN=ETC2 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-16
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 16 ESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDSIKVSKKMAFHFRWDLIAGRIPGRKPEE 75
          +SEEVSS  W+FI+MT QEEDLI RM++L+G+            RWDLIAGR+ GRK  E
Sbjct: 26 DSEEVSSIEWEFISMTEQEEDLISRMYRLVGN------------RWDLIAGRVVGRKANE 85

Query: 76 IERYWIMTHLEGFAVRRR 94
          IERYWIM + + F+ +RR
Sbjct: 86 IERYWIMRNSDYFSHKRR 91

[Close]

BLAST of CmaCh02G011010 vs. ExPASy Swiss-Prot
Match: Q9M157 (MYB-like transcription factor ETC3 OS=Arabidopsis thaliana OX=3702 GN=ETC3 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-16
Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 1  MDNHRNQQQAKTTPL---ESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDSIKVSKKMAF 60
          MDNHR  +Q KT  +    SEEVSS  W+ + M+ +EEDL+ RMHKL+GD          
Sbjct: 1  MDNHRRTKQPKTNSIVTSSSEEVSSLEWEVVNMSQEEEDLVSRMHKLVGD---------- 60

Query: 61 HFRWDLIAGRIPGRKPEEIERYWIM 83
            RW+LIAGRIPGR   EIER+W+M
Sbjct: 61 --RWELIAGRIPGRTAGEIERFWVM 73

[Close]

BLAST of CmaCh02G011010 vs. TAIR 10
Match: AT5G53200.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 104.4 bits (259), Expect = 5.2e-23
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 0


Query: 2  DNHRNQQQAKTTPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDSIKVSKKMAFHFRW 61
          D  R ++Q K    +SEEVSS  W+FI MT QEEDLI RM++L+GD            RW
Sbjct: 5  DRRRRRKQHKIALHDSEEVSSIEWEFINMTEQEEDLIFRMYRLVGD------------RW 64

Query: 62 DLIAGRIPGRKPEEIERYWIMTHLEGFAVRRR 94
          DLIAGR+PGR+PEEIERYWIM + EGFA +RR
Sbjct: 65 DLIAGRVPGRQPEEIERYWIMRNSEGFADKRR 84

[Close]

BLAST of CmaCh02G011010 vs. TAIR 10
Match: AT2G46410.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 91.7 bits (226), Expect = 3.5e-19
Identity = 48/89 (53.93%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 5  RNQQQAKTTPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDSIKVSKKMAFHFRWDLI 64
          R ++Q+K     SEEVSS  W+ + M+ +EEDLI RM+KL+GD            RW+LI
Sbjct: 13 RRRRQSKAKASCSEEVSSIEWEAVKMSEEEEDLISRMYKLVGD------------RWELI 72

Query: 65 AGRIPGRKPEEIERYWIMTHLEGFAVRRR 94
          AGRIPGR PEEIERYW+M H   FA RRR
Sbjct: 73 AGRIPGRTPEEIERYWLMKHGVVFANRRR 89

[Close]

BLAST of CmaCh02G011010 vs. TAIR 10
Match: AT2G30424.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 87.0 bits (214), Expect = 8.6e-18
Identity = 43/89 (48.31%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 5  RNQQQAKTTPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDSIKVSKKMAFHFRWDLI 64
          R+++Q+K T  ++ EV+S +W+FI MT QEEDLI RMH+L+GD            RWDLI
Sbjct: 11 RSRKQSKFTLGDTAEVNSVKWEFINMTEQEEDLIFRMHRLVGD------------RWDLI 70

Query: 65 AGRIPGRKPEEIERYWIMTHLEGFAVRRR 94
          AGR+ GR+ ++IERYWIM + +  + +RR
Sbjct: 71 AGRVVGREAKDIERYWIMRNCDHCSHKRR 87

[Close]

BLAST of CmaCh02G011010 vs. TAIR 10
Match: AT2G30420.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 1.1e-17
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 16 ESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDSIKVSKKMAFHFRWDLIAGRIPGRKPEE 75
          +SEEVSS  W+FI+MT QEEDLI RM++L+G+            RWDLIAGR+ GRK  E
Sbjct: 26 DSEEVSSIEWEFISMTEQEEDLISRMYRLVGN------------RWDLIAGRVVGRKANE 85

Query: 76 IERYWIMTHLEGFAVRRR 94
          IERYWIM + + F+ +RR
Sbjct: 86 IERYWIMRNSDYFSHKRR 91

[Close]

BLAST of CmaCh02G011010 vs. TAIR 10
Match: AT4G01060.2 (CAPRICE-like MYB3 )

HSP 1 Score: 85.1 bits (209), Expect = 3.2e-17
Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 1  MDNHRNQQQAKTTPL--ESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDSIKVSKKMAFH 60
          MDNHR  +Q KT  +   S EVSS  W+ + M+ +EEDL+ RMHKL+GD           
Sbjct: 1  MDNHRRTKQPKTNSIVTSSSEVSSLEWEVVNMSQEEEDLVSRMHKLVGD----------- 60

Query: 61 FRWDLIAGRIPGRKPEEIERYWIM 83
           RW+LIAGRIPGR   EIER+W+M
Sbjct: 61 -RWELIAGRIPGRTAGEIERFWVM 72

The following BLAST results are available for this feature:

BLAST of CmaCh02G011010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GV05	7.3e-22	57.61	Transcription factor TRY OS=Arabidopsis thaliana OX=3702 GN=TRY PE=1 SV=1	[more]
O22059	4.9e-18	53.93	Transcription factor CPC OS=Arabidopsis thaliana OX=3702 GN=CPC PE=1 SV=1	[more]
B3H4X8	1.2e-16	48.31	MYB-like transcription factor TCL2 OS=Arabidopsis thaliana OX=3702 GN=TCL2 PE=1 ...	[more]
Q84RD1	1.6e-16	55.13	MYB-like transcription factor ETC2 OS=Arabidopsis thaliana OX=3702 GN=ETC2 PE=1 ...	[more]
Q9M157	1.6e-16	51.76	MYB-like transcription factor ETC3 OS=Arabidopsis thaliana OX=3702 GN=ETC3 PE=2 ...	[more]

BLAST of CmaCh02G011010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53200.1	5.2e-23	57.61	Homeodomain-like superfamily protein	[more]
AT2G46410.1	3.5e-19	53.93	Homeodomain-like superfamily protein	[more]
AT2G30424.1	8.6e-18	48.31	Homeodomain-like superfamily protein	[more]
AT2G30420.1	1.1e-17	55.13	Homeodomain-like superfamily protein	[more]
AT4G01060.2	3.2e-17	51.19	CAPRICE-like MYB3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.10.60		coord: 31..85 e-value: 1.8E-7 score: 33.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR47998	TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1	coord: 1..91
None	No IPR available	PANTHER	PTHR47998:SF12	MYB-LIKE TRANSCRIPTION FACTOR ETC3	coord: 1..91
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 29..80 e-value: 1.92901E-4 score: 34.0882

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G011010.1	CmaCh02G011010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000976	transcription cis-regulatory region binding