CmaCh02G010250 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G010250
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	MADS-box protein AGL42-like
Location	Cma_Chr02: 6091642 .. 6095821 (-)
RNA-Seq Expression	CmaCh02G010250
Synteny	CmaCh02G010250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTTATATCTGCTCTTCTCATTCGGCACAAACGAAAAAGAAAGCTCAAATCCCCTTTTGAGCTCAATCTTTCCAGTTTTTGGCCCAATAATCTTGGAACTAATCCCAGCTGAGCTTCTGAATCTGAAAACAACAATGGTGAGAGGGAGGGTGGAAATGAAACGAATAGAAAACGCGACAAATCGTCAAGTGACATTCTCGAAGAGACGAAATGGGCTGTTGAAGAAGGCGTATGAGCTCTCTGTTCTGTGCGATGCTGAAGTTTCTGTCATGATTTTCTCTCAGAAAGGAAGGCTTTATGAGTTTTCAAGCACCGAGTAAGTCATTTTTTCTTGTTCTTCTGATTCAGAAATCGCCTAAATTCATTTTGTTTAGCTGTTTTGATTTGAATCTGTAGAACTAAAAGGGCGACGATGGGGAAATTAGGGTTTGTTTATGAGTCTAATCTTAGTCATATCTATCTACTTCACTGTGATTATTTATTCAAAATTGTACCTCTTAGATTTCATCTAGGGTTTTGTAAGATCTTCCTTCTGGGAAATTGTAGCTCTTAAAAAATTGTTTAAAATTTTCTTCTGGGTTTGGTTTGATCAAGTAAATAGAATGATTTGGATATTGATTCTTAAGTTATTCAGAAAGCTTGTTGTGATTGAATTAATAGTTACGTTACTACATGCATCTAAAAGATATTTGCGATGAGAAAACTCACGGAGAACAATAATTTTCTAGAAGACATGCTTAAATGTTATAGAAACGGTATATGAGTCATTCGAACAGTAAAACCATTTAATTTGACGATGAATCTAAGAAAAAAAACTCTTGGTATTCCATTGACGTAATCCTTTGTCCAACTCACGACCTTTAGAGGATTACCCAAATGGTTAGTATACAAAAGGGGTCTCGTATCTTAGTTTGCCTAGTTTGAAACACAACAATCCGAGCCCTTGCTAAAAACGGTTCGTCGAGGTTCAAAATTTGCAAATTAAGACTTTTGAACATGTGGGTATTTGAAACTCATTATACCAAATAAAATTGACGAAGTGTATGAGATCTAAATTTTGAGATCAACTTAGATGCAAGTTATTGTAGTTTATAGTAGTTATTGTTACTGTTGAACAAAACACGTCGTGAAACACAAAGACCCAAAAACCCACACAATGTTAAAAAAAGAACGTCGGGATAAGCTTGAAATAATATTCTTGAGACCAAATTCTTCTCGCTAACACTTCTAAATTAAATAAATTAAACTTGAAGATTAATTTCAAGCACGGATATATTTATAAATATCAAACTATAATATAGTTTGAAAAAGAAACATATAGTCCCATTCTTACAAGTTGTTGTAGTCTGCATGTCTGAAAAATGTGGATCTTGTATTTCTACCAAAGATTCTCAAAACAACATTAAAAAAAACTGTCATAACGCCTAGGCCCTACCTTGTCAGCTGAACACATAAATATGCCTTGTCACAGTTAAACTTCAATTTGTTTTTTCATCTTTTTAAATTTTAAATTTTAAATTTTGTCTATAATGTATTAAAAACTATTTAATATATTTAACCTAAATTAATTTTATATATTGAAAAAATTATAACTAGGGTTTATGTTCATTTATTCATTTTGCATAAATTCTTCTTTTTTCAAATTAAGCAACATGAACATGTTATAGATTTTCACAAGTATTTGATCATGTGTGTTTTGTTATATGTTTTTTTTTTTTTTGTTGGATGACTCAGTATACATAAGTCCATCGAGCGTTATAGATGTTATGGAAAAGATGGACAGACCAACGCTCTTCGCTCCGAAGTATACATGCAGGTTTCTTTTTCCTTCTTTCTATTCACAAATCGGATTATATAAAAATACATTTGAACAACAAGTGATTCAACTAAAAATTTGTATTTTAAAGAGAAAAAGTTGATATATCGGTGTAGTGAGTTTAAAACGTAGCAAAAAGGAGGTTTTAGGTTCATTTTTTTTTTTATTCTTCATGTCCCAGATTACGTCCAAATAGAATTAATAGTTTCTCTAACGTAAAAGTTTCTCTCTCTTCCAAATAGAATTAGGAAAAAGTCATATTAGGGCTTCTCTCGGGACTTATTAGGCCATAGGCATGCGGAATGCACATCCATGTATGTTTCTGTTGACTTGTCTTGGCTGCGCTTCGACCTAGGCTGAGGCGGTCTTAAGGTTTTTCGATCTACTAACTTTTATTCGGGTTCAATCTTGCCCTAGGTTTTAGGTTCAATATGAACATTGTTTTGGGCAAATTTTCGTTAAACCATGTCTCCTCAAATGCTCTCAAGAATGAAGATAACACAAAGGTTTTGTCGACCCTCTTAAAACTCCGATATAACGGTAGTTTTGGACACTTTTTCATAGATGATTATAAATTCAATCCATAAACTTTTAGGGTTTTGTCTAATAAACACCCCACTTCAAAACTTATTAATCCAAAGGGTTATGTAACTAAGTCATTATGAATGGAATACTTAAATTGTATGCAGCAAATGAAGCAGGAAGCTGACATGACGGCAAAGAAAATGGAGCAACTTGAAACTTCACAAAAGTAAGCAATTTCTAACTTAATAACACTGCTTTCTAATAACATTCTAGGTTAAGTTTTTGAATTTGTTCGTCTTAGGAAGCTGTTGGGACGTGGGTTGGATTCGTGTTCGTTGGAGGAAATCCGAGAGATTGAAACCCAGTTGATACTTAGCTTGACTCGTATTCGAGAAAGAAAGGTACGTTTCTGTTCTAGAACACCAAGGCCCTTTTAACACATTGAATCTCTCTCTTTTAACACATTGAATATCTCTTTTAGGGTTAGTAACGCTTCGAATATCATATTATGAAAAGATTGATAGATTATGATATAAACCAAGACATTTCAGTCGTACAATATGAATTTTGAAGAAGTTGGGAAGAATATTGTTAGTTGCAATTAAGGAAACATTAAGAAGAATCAAGCTTCATTTATGTAATAAGGATTTTTAGATACTGGGACTTCATTTATTCTTAAATGGTTACAAACTATCGATGGACCATTAAAATTTAGATTTATGGTGTTTCGTTAATATTTTTTTAAGTTTTAAGACTTTTTATTTACTTTTAGGTTGCATTTACTTAGTGGGTAATTATGATTATGAAGTATGAAAGTTACCGAAGGTCAAGGGTTTCGGTTTCATTTTGAGGCTGTATGAAACCCTTGATCTTCCCTGAGTCGTCTCAAGAGTTGTGGAGCGATTCAAATCTTAGTTTCCTTAAAGGTTTTATTTTGCAATAAAATTGTTAGATCGAATTCTCGAGAGTAACAATCATTTAAGATGAAATCATCTCGATTAAGAGGTTTTAGTATTTTTAATCTAGAGATTTGCATATTTATAAACGTTTTTAGATTCAATTGGTATGAATTTTCATATTAGATTGGGCCGTTGCGATTACGGAGACTAAAAATATGTTAAAAAATTTCGTTTGGTTACAGTCTCAGCTATTCAAGGAGCAGAGAATGAAGCTGATTGAAAAGGTAATGAAATTTCATTGAAATATTTTCAGTTCATTCCTTTTCAATTTATTCTTTCTAGATTCAAATATGAGATATAAATAAACCGAAACGTCTAAACTCGTTCATTTTTTAATGTTTTGGAGTTTAATTGATAGAATTATAAAAACTTTTGGTATGTTTTGTTTGGTTGAATCAGGGGAAACTGCTCATAGAGGAAAATATAAAGTTAGCTGCAAAGGTAAGACCCCATTTTCCCCATTGTTTGTTGTTCTAAGGTTTAACGTTGTGAAACTCGAAAATCCCTGTCGTTGTGGTTGGTTGTGTTGGACTCTGAAATGTTTGTTAATACATTTAGTGTGGTACTCAGCCATGGGAGGCAGAAGGTGGTGGTGAAGATGAGGGAGGATGGATTATGAGTTTATTATGCACCCAAAATGGTCAACCTTCTCATATCAACACTAAATTGTTCATTGGATTGCCTTGCTCATGATCCTGTTCTAAACTTTTTACTACCATTTTTAAGCCTGGCTCGTATAGAAATTCATTGATATAAGGAATGAAATAAATAAGCGCCCACGTGTAACCTTAAAAACGGTTGAATGGTTGTTTTCTATGCCAAATATTTAGCTTTCCAGTTTACTGGATGTATTGTATTTGACCCTTAATGATAGGCTA

mRNA sequence

AAATTTATATCTGCTCTTCTCATTCGGCACAAACGAAAAAGAAAGCTCAAATCCCCTTTTGAGCTCAATCTTTCCAGTTTTTGGCCCAATAATCTTGGAACTAATCCCAGCTGAGCTTCTGAATCTGAAAACAACAATGGTGAGAGGGAGGGTGGAAATGAAACGAATAGAAAACGCGACAAATCGTCAAGTGACATTCTCGAAGAGACGAAATGGGCTGTTGAAGAAGGCGTATGAGCTCTCTGTTCTGTGCGATGCTGAAGTTTCTGTCATGATTTTCTCTCAGAAAGGAAGGCTTTATGAGTTTTCAAGCACCGATATACATAAGTCCATCGAGCGTTATAGATGTTATGGAAAAGATGGACAGACCAACGCTCTTCGCTCCGAAGTATACATGCAGCAAATGAAGCAGGAAGCTGACATGACGGCAAAGAAAATGGAGCAACTTGAAACTTCACAAAAGAAGCTGTTGGGACGTGGGTTGGATTCGTGTTCGTTGGAGGAAATCCGAGAGATTGAAACCCAGTTGATACTTAGCTTGACTCGTATTCGAGAAAGAAAGTCTCAGCTATTCAAGGAGCAGAGAATGAAGCTGATTGAAAAGGGGAAACTGCTCATAGAGGAAAATATAAAGTTAGCTGCAAAGTGTGGTACTCAGCCATGGGAGGCAGAAGGTGGTGGTGAAGATGAGGGAGGATGGATTATGAGTTTATTATGCACCCAAAATGGTCAACCTTCTCATATCAACACTAAATTGTTCATTGGATTGCCTTGCTCATGATCCTGTTCTAAACTTTTTACTACCATTTTTAAGCCTGGCTCGTATAGAAATTCATTGATATAAGGAATGAAATAAATAAGCGCCCACGTGTAACCTTAAAAACGGTTGAATGGTTGTTTTCTATGCCAAATATTTAGCTTTCCAGTTTACTGGATGTATTGTATTTGACCCTTAATGATAGGCTA

Coding sequence (CDS)

ATGGTGAGAGGGAGGGTGGAAATGAAACGAATAGAAAACGCGACAAATCGTCAAGTGACATTCTCGAAGAGACGAAATGGGCTGTTGAAGAAGGCGTATGAGCTCTCTGTTCTGTGCGATGCTGAAGTTTCTGTCATGATTTTCTCTCAGAAAGGAAGGCTTTATGAGTTTTCAAGCACCGATATACATAAGTCCATCGAGCGTTATAGATGTTATGGAAAAGATGGACAGACCAACGCTCTTCGCTCCGAAGTATACATGCAGCAAATGAAGCAGGAAGCTGACATGACGGCAAAGAAAATGGAGCAACTTGAAACTTCACAAAAGAAGCTGTTGGGACGTGGGTTGGATTCGTGTTCGTTGGAGGAAATCCGAGAGATTGAAACCCAGTTGATACTTAGCTTGACTCGTATTCGAGAAAGAAAGTCTCAGCTATTCAAGGAGCAGAGAATGAAGCTGATTGAAAAGGGGAAACTGCTCATAGAGGAAAATATAAAGTTAGCTGCAAAGTGTGGTACTCAGCCATGGGAGGCAGAAGGTGGTGGTGAAGATGAGGGAGGATGGATTATGAGTTTATTATGCACCCAAAATGGTCAACCTTCTCATATCAACACTAAATTGTTCATTGGATTGCCTTGCTCATGA

Protein sequence

MVRGRVEMKRIENATNRQVTFSKRRNGLLKKAYELSVLCDAEVSVMIFSQKGRLYEFSSTDIHKSIERYRCYGKDGQTNALRSEVYMQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCSLEEIREIETQLILSLTRIRERKSQLFKEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEGGGEDEGGWIMSLLCTQNGQPSHINTKLFIGLPCS

Homology

[Close]

BLAST of CmaCh02G010250 vs. ExPASy Swiss-Prot
Match: Q9FIS1 (MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 6.0e-56
Identity = 120/212 (56.60%), Postives = 159/212 (75.00%), Query Frame = 0


Query: 1   MVRGRVEMKRIENATNRQVTFSKRRNGLLKKAYELSVLCDAEVSVMIFSQKGRLYEFSST 60
           MVRG++EMK+IENAT+RQVTFSKRRNGLLKKAYELSVLCDA++S++IFSQ+GRLYEFSS+
Sbjct: 1   MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 61  DIHKSIERYRCYGKDGQTNALRSEVYMQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCS 120
           D+ K+IERYR Y KD +T+   S++++QQ+KQEA     K+E LE  ++KLLG+G+ SCS
Sbjct: 61  DMQKTIERYRKYTKDHETSNHDSQIHLQQLKQEASHMITKIELLEFHKRKLLGQGIASCS 120

Query: 121 LEEIREIETQLILSLTRIRERKSQLFKEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEG 180
           LEE++EI++QL  SL ++RERK+QLFKEQ  KL  K K L+EEN+KL  K    PW    
Sbjct: 121 LEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQKNVINPWRGSS 180

Query: 181 GGEDEGGWIMSLLCTQNGQPSHINTKLFIGLP 213
             + +  + +  L  +      + T LFIGLP
Sbjct: 181 TDQQQEKYKVIDLNLE------VETDLFIGLP 206

[Close]

BLAST of CmaCh02G010250 vs. ExPASy Swiss-Prot
Match: O64645 (MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.2e-49
Identity = 116/222 (52.25%), Postives = 155/222 (69.82%), Query Frame = 0


Query: 1   MVRGRVEMKRIENATNRQVTFSKRRNGLLKKAYELSVLCDAEVSVMIFSQKGRLYEFSST 60
           MVRG+ +MKRIENAT+RQVTFSKRRNGLLKKA+ELSVLCDAEVS++IFS KG+LYEF+S+
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 61  DIHKSIERYRCYGKDGQTNALRSEVYMQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCS 120
           ++  +I+RY  + KD  +    SE  MQ +K EA    KK+EQLE S++KLLG G+ +CS
Sbjct: 61  NMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCS 120

Query: 121 LEEIREIETQLILSLTRIRERKSQLFKEQRMKLIEKGKLLIEENIKLAAKCG---TQPW- 180
           +EE+++IE QL  S+  IR RK+Q+FKEQ  +L +K K L  EN KL+ K G   ++ W 
Sbjct: 121 IEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHESEVWS 180

Query: 181 ----EAEGGGEDEGGWIMSLLCTQNGQPSHINTKLFIGLPCS 215
               E+ G G++E           +   S + T+LFIGLPCS
Sbjct: 181 NKNQESTGRGDEE-----------SSPSSEVETQLFIGLPCS 211

[Close]

BLAST of CmaCh02G010250 vs. ExPASy Swiss-Prot
Match: Q9XJ60 (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS50 PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.0e-43
Identity = 109/219 (49.77%), Postives = 143/219 (65.30%), Query Frame = 0


Query: 1   MVRGRVEMKRIENATNRQVTFSKRRNGLLKKAYELSVLCDAEVSVMIFSQKGRLYEFSST 60
           MVRG+ +MKRIEN T+RQVTFSKRRNGLLKKA+ELSVLCDAEV++++FS +G+LYEF+S 
Sbjct: 1   MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASA 60

Query: 61  DIHKSIERYRCYGKDGQTNALRSEVYMQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCS 120
              K+IERYR Y K+   N    +  ++Q+K +AD  AKK+E LET ++KLLG  LD CS
Sbjct: 61  STQKTIERYRTYTKENIGNKTVQQ-DIEQVKADADGLAKKLEALETYKRKLLGEKLDECS 120

Query: 121 LEEIREIETQLILSLTRIRERKSQLFKEQRMKLIEKGKLLIEENIKLAAKCGTQP----- 180
           +EE+  +E +L  SL  IR RK++L +EQ  KL EK   L ++N +L  KC  QP     
Sbjct: 121 IEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREKCKNQPPLSAP 180

Query: 181 --WEAEGGGEDEGGWIMSLLCTQNGQPSHINTKLFIGLP 213
               AE    D        + T N     + T+LFIGLP
Sbjct: 181 LTVRAEDENPDRN------INTTNDN-MDVETELFIGLP 211

[Close]

BLAST of CmaCh02G010250 vs. ExPASy Swiss-Prot
Match: Q38838 (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana OX=3702 GN=AGL14 PE=1 SV=2)

HSP 1 Score: 168.7 bits (426), Expect = 7.2e-41
Identity = 109/217 (50.23%), Postives = 143/217 (65.90%), Query Frame = 0


Query: 1   MVRGRVEMKRIENATNRQVTFSKRRNGLLKKAYELSVLCDAEVSVMIFSQKGRLYEF-SS 60
           MVRG+ EMKRIENAT+RQVTFSKRRNGLLKKA+ELSVLCDAEV+++IFS +G+LYEF SS
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61  TDIHKSIERYRCYGKDGQTNALRSEVYMQQMKQEADMTAKKMEQLETSQKKLLGRGLDSC 120
           + I K++ERY+   +D  +N  R++   QQ K E    A+K+E LE S +K++G GLD+ 
Sbjct: 61  SSIPKTVERYQKRIQDLGSNHKRND-NSQQSKDETYGLARKIEHLEISTRKMMGEGLDAS 120

Query: 121 SLEEIREIETQLILSLTRIRERKSQLFKEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAE 180
           S+EE++++E QL  SL +IR +K QL +E+  KL EK + LI EN  L  KC  Q     
Sbjct: 121 SIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEMQ----- 180

Query: 181 GGGEDEGGWIMSLLCTQ----NGQPSHINTKLFIGLP 213
             G    G I S   T     +     + T LFIG P
Sbjct: 181 --GRGIIGRISSSSSTSELDIDDNEMEVVTDLFIGPP 209

[Close]

BLAST of CmaCh02G010250 vs. ExPASy Swiss-Prot
Match: O82743 (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.7e-40
Identity = 95/170 (55.88%), Postives = 128/170 (75.29%), Query Frame = 0


Query: 1   MVRGRVEMKRIENATNRQVTFSKRRNGLLKKAYELSVLCDAEVSVMIFSQKGRLYEFSST 60
           MVRG+ EMKRIENAT+RQVTFSKRRNGLLKKA+ELSVLCDAEV+++IFS + +LYEFSS+
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query: 61  DIHKSIERYRCYGKDGQTNALRSEVYMQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCS 120
            I  +IERY+   K+   N  R++   QQ + E     KK+EQLE S++KLLG G+D+CS
Sbjct: 61  SIAATIERYQRRIKEIGNNHKRND-NSQQARDETSGLTKKIEQLEISKRKLLGEGIDACS 120

Query: 121 LEEIREIETQLILSLTRIRERKSQLFKEQRMKLIEKGKLLIEENIKLAAK 171
           +EE++++E QL  SL+RIR +K QL +E+  KL  + + L++EN  L  K
Sbjct: 121 IEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEK 169

[Close]

BLAST of CmaCh02G010250 vs. TAIR 10
Match: AT5G62165.1 (AGAMOUS-like 42 )

HSP 1 Score: 218.8 bits (556), Expect = 4.3e-57
Identity = 120/212 (56.60%), Postives = 159/212 (75.00%), Query Frame = 0


Query: 1   MVRGRVEMKRIENATNRQVTFSKRRNGLLKKAYELSVLCDAEVSVMIFSQKGRLYEFSST 60
           MVRG++EMK+IENAT+RQVTFSKRRNGLLKKAYELSVLCDA++S++IFSQ+GRLYEFSS+
Sbjct: 1   MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 61  DIHKSIERYRCYGKDGQTNALRSEVYMQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCS 120
           D+ K+IERYR Y KD +T+   S++++QQ+KQEA     K+E LE  ++KLLG+G+ SCS
Sbjct: 61  DMQKTIERYRKYTKDHETSNHDSQIHLQQLKQEASHMITKIELLEFHKRKLLGQGIASCS 120

Query: 121 LEEIREIETQLILSLTRIRERKSQLFKEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEG 180
           LEE++EI++QL  SL ++RERK+QLFKEQ  KL  K K L+EEN+KL  K    PW    
Sbjct: 121 LEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQKNVINPWRGSS 180

Query: 181 GGEDEGGWIMSLLCTQNGQPSHINTKLFIGLP 213
             + +  + +  L  +      + T LFIGLP
Sbjct: 181 TDQQQEKYKVIDLNLE------VETDLFIGLP 206

[Close]

BLAST of CmaCh02G010250 vs. TAIR 10
Match: AT5G62165.2 (AGAMOUS-like 42 )

HSP 1 Score: 218.8 bits (556), Expect = 4.3e-57
Identity = 120/212 (56.60%), Postives = 159/212 (75.00%), Query Frame = 0


Query: 1   MVRGRVEMKRIENATNRQVTFSKRRNGLLKKAYELSVLCDAEVSVMIFSQKGRLYEFSST 60
           MVRG++EMK+IENAT+RQVTFSKRRNGLLKKAYELSVLCDA++S++IFSQ+GRLYEFSS+
Sbjct: 1   MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 61  DIHKSIERYRCYGKDGQTNALRSEVYMQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCS 120
           D+ K+IERYR Y KD +T+   S++++QQ+KQEA     K+E LE  ++KLLG+G+ SCS
Sbjct: 61  DMQKTIERYRKYTKDHETSNHDSQIHLQQLKQEASHMITKIELLEFHKRKLLGQGIASCS 120

Query: 121 LEEIREIETQLILSLTRIRERKSQLFKEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEG 180
           LEE++EI++QL  SL ++RERK+QLFKEQ  KL  K K L+EEN+KL  K    PW    
Sbjct: 121 LEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQKNVINPWRGSS 180

Query: 181 GGEDEGGWIMSLLCTQNGQPSHINTKLFIGLP 213
             + +  + +  L  +      + T LFIGLP
Sbjct: 181 TDQQQEKYKVIDLNLE------VETDLFIGLP 206

[Close]

BLAST of CmaCh02G010250 vs. TAIR 10
Match: AT5G62165.3 (AGAMOUS-like 42 )

HSP 1 Score: 218.8 bits (556), Expect = 4.3e-57
Identity = 120/212 (56.60%), Postives = 159/212 (75.00%), Query Frame = 0


Query: 1   MVRGRVEMKRIENATNRQVTFSKRRNGLLKKAYELSVLCDAEVSVMIFSQKGRLYEFSST 60
           MVRG++EMK+IENAT+RQVTFSKRRNGLLKKAYELSVLCDA++S++IFSQ+GRLYEFSS+
Sbjct: 1   MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 61  DIHKSIERYRCYGKDGQTNALRSEVYMQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCS 120
           D+ K+IERYR Y KD +T+   S++++QQ+KQEA     K+E LE  ++KLLG+G+ SCS
Sbjct: 61  DMQKTIERYRKYTKDHETSNHDSQIHLQQLKQEASHMITKIELLEFHKRKLLGQGIASCS 120

Query: 121 LEEIREIETQLILSLTRIRERKSQLFKEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEG 180
           LEE++EI++QL  SL ++RERK+QLFKEQ  KL  K K L+EEN+KL  K    PW    
Sbjct: 121 LEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQKNVINPWRGSS 180

Query: 181 GGEDEGGWIMSLLCTQNGQPSHINTKLFIGLP 213
             + +  + +  L  +      + T LFIGLP
Sbjct: 181 TDQQQEKYKVIDLNLE------VETDLFIGLP 206

[Close]

BLAST of CmaCh02G010250 vs. TAIR 10
Match: AT5G62165.4 (AGAMOUS-like 42 )

HSP 1 Score: 197.6 bits (501), Expect = 1.0e-50
Identity = 111/212 (52.36%), Postives = 149/212 (70.28%), Query Frame = 0


Query: 1   MVRGRVEMKRIENATNRQVTFSKRRNGLLKKAYELSVLCDAEVSVMIFSQKGRLYEFSST 60
           MVRG++EMK+IENAT+RQVTFSKRRNGLLKKAYELSVLCDA++S++IFSQ+GRLYEFSS+
Sbjct: 1   MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 61  DIHKSIERYRCYGKDGQTNALRSEVYMQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCS 120
           D+ K+IERYR Y KD +T+   S++++QQ+KQEA     K+E LE  ++KLLG+G+ SCS
Sbjct: 61  DMQKTIERYRKYTKDHETSNHDSQIHLQQLKQEASHMITKIELLEFHKRKLLGQGIASCS 120

Query: 121 LEEIREIETQLILSLTRIRERKSQLFKEQRMKLIEKGKLLIEENIKLAAKCGTQPWEAEG 180
           LEE++EI++QL  SL ++RERK               K L+EEN+KL  K    PW    
Sbjct: 121 LEELQEIDSQLQRSLGKVRERKE--------------KQLLEENVKLHQKNVINPWRGSS 180

Query: 181 GGEDEGGWIMSLLCTQNGQPSHINTKLFIGLP 213
             + +  + +  L  +      + T LFIGLP
Sbjct: 181 TDQQQEKYKVIDLNLE------VETDLFIGLP 192

[Close]

BLAST of CmaCh02G010250 vs. TAIR 10
Match: AT2G45660.1 (AGAMOUS-like 20 )

HSP 1 Score: 196.1 bits (497), Expect = 3.0e-50
Identity = 116/222 (52.25%), Postives = 155/222 (69.82%), Query Frame = 0


Query: 1   MVRGRVEMKRIENATNRQVTFSKRRNGLLKKAYELSVLCDAEVSVMIFSQKGRLYEFSST 60
           MVRG+ +MKRIENAT+RQVTFSKRRNGLLKKA+ELSVLCDAEVS++IFS KG+LYEF+S+
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 61  DIHKSIERYRCYGKDGQTNALRSEVYMQQMKQEADMTAKKMEQLETSQKKLLGRGLDSCS 120
           ++  +I+RY  + KD  +    SE  MQ +K EA    KK+EQLE S++KLLG G+ +CS
Sbjct: 61  NMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCS 120

Query: 121 LEEIREIETQLILSLTRIRERKSQLFKEQRMKLIEKGKLLIEENIKLAAKCG---TQPW- 180
           +EE+++IE QL  S+  IR RK+Q+FKEQ  +L +K K L  EN KL+ K G   ++ W 
Sbjct: 121 IEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHESEVWS 180

Query: 181 ----EAEGGGEDEGGWIMSLLCTQNGQPSHINTKLFIGLPCS 215
               E+ G G++E           +   S + T+LFIGLPCS
Sbjct: 181 NKNQESTGRGDEE-----------SSPSSEVETQLFIGLPCS 211

The following BLAST results are available for this feature:

BLAST of CmaCh02G010250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIS1	6.0e-56	56.60	MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1	[more]
O64645	4.2e-49	52.25	MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1	[more]
Q9XJ60	2.0e-43	49.77	MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]
Q38838	7.2e-41	50.23	Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana OX=3702 GN=AGL14 PE=...	[more]
O82743	2.7e-40	55.88	Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=...	[more]

BLAST of CmaCh02G010250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62165.1	4.3e-57	56.60	AGAMOUS-like 42	[more]
AT5G62165.2	4.3e-57	56.60	AGAMOUS-like 42	[more]
AT5G62165.3	4.3e-57	56.60	AGAMOUS-like 42	[more]
AT5G62165.4	1.0e-50	52.36	AGAMOUS-like 42	[more]
AT2G45660.1	3.0e-50	52.25	AGAMOUS-like 20	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 87..107
None	No IPR available	PANTHER	PTHR11945:SF341	MADS-BOX PROTEIN SOC1	coord: 1..211
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 1..211
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 23..38 score: 86.34 coord: 38..59 score: 54.93 coord: 3..23 score: 69.04
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 2.8E-40 score: 149.8
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 e-value: 5.1E-26 score: 90.0
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 32.351749
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 13..100 e-value: 7.8E-28 score: 98.4
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 3..80
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 87..171 e-value: 8.1E-18 score: 64.4
IPR002487	Transcription factor, K-box	PROSITE	PS51297	K_BOX	coord: 87..177 score: 12.630369
IPR033896	MADS MEF2-like	CDD	cd00265	MADS_MEF2_like	coord: 3..70 e-value: 8.67207E-41 score: 131.906

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G010250.1	CmaCh02G010250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009838	abscission
biological_process	GO:0080187	floral organ senescence
biological_process	GO:0010150	leaf senescence
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding