CmaCh02G009630 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G009630
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Tumor necrosis factor receptor family protein
Location	Cma_Chr02: 5726914 .. 5730179 (-)
RNA-Seq Expression	CmaCh02G009630
Synteny	CmaCh02G009630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGTGGCTTCGCGGTATTCAAACAATTAGAAATGCAGATGGAGGTGGAGGTTCTGCTGGCCTTGTTTTCAGCACATTCGCGAGGTATTTCTCGAGGTCGCGAGCAGAGAATCTTAGGAAAATCAATCCCAAGTTGACCCCTCAGGAGGCTTCTTTGGTTGCTCAAGATCTCTATGGTGTCGTCAAGCAGCATGGACCGCTCACAGTTTCCAATGCTTGGATTAAAGCCCAGGTAGGTTTTCTTCACCTTCTGTTACATTTCATCGCTTATTTTCTTTCATTTCGAAGTTGGACGATGGTTATCGAAACTGCAGCTTATGGACCGCTCAAAGTTGCTTGATCTAGGTTAGCTCTGTAGCCACATTAGTTAAAGTCTGATATTGAGTCTCAATCTGAATGGGGATATGCTTTTGAGTTGAAGTGACCTGTCTTTTAGATGGATGTTCATTCACTCATTGAAGAATGCTTACCAAGTCATTCGGCTGGAGCATATAGATTACTTCATTCAAAACGCCATTAAGAAACGAATTACTAATATCTAGCTACCCAAATTAGCGACCATTTTTCAAAGCAATACTAATTATTAGTAAGGAAAATGAGAAGTTTTTGAGTATTTTTGACGAAACTCTTTTGGAACAAACAAGCTTTGTACCCTCGAACACTTACTACCGCATGTAATTTTATACTGAACACCCGTTTGTTGCTGTTTCCTAGAGATGCTCAGGAGGAGCAGTGGCGAGTGAAGTGGGTTAGAATGAGTAGCCCAGCGGGACCAACCATCTTGGATTGGCTCCATAAAAAATAGGTACCTTCAGCATGTGTCACTGGTACTGTACCAAGTGTGCTTGTTCTCCTATTGACACCCCTCTGCTCACACCACCTTCCTTTACTCTCTGTAATGTATTACTTCCATTGGCACTTTTCCATAAGCCTCCTTGGTCTTCTCTTCTAGGATAGATACTTTCTATTTCCAAATACCCTTTAGTTTCGTAATCATCTTTGTCACCATGTTAAACTCCTCCTCGATATGAACAAGTTTCATCTCAATGGTACTCTATACTCTTATGATATTCCCTTCCACGACATCTAGATCTAGTCTTGTATTCATTTTCTTTCATTAGTTAGCATTTCCTATAACCACACTAATCTAGCACTACTTTTGGTTAACACCTACACGGGTATTTTCCTTCTTGCATCAGGTATCCCAAAAGGACATCATATATGGACTCTTTTCTGCCAAGTTAATTAGTTAAAGAACACCATCAAGTACATCATGCATCCAACTTGCTAGTTTTCGTTCAATTTCTTTCTGTGCTATGTATGCATAGTAGTGGCCTATCGAAACCTTTGAAAGAGTGGAAATATTCCCTTCAATCAAATTGAAGACATTTCAATAACGTACCTAAAGGATCTTTACTGGAGCTTTCAACTTCTTGAATATGGCGAAAGCTTTAGACTTGACTCTGACAGGACAGGCCCAGGTAAATTACCAAAGTCATAAAGCAAACGAATTAAAAAATTATAGCCTTCTTTGAAAGGGATGGGCGTAGGTCCTCAGATATCAATATGCACTATTTCAAGAGGATAAGTGGTGTATCAGTGAGAGGGAGATAAGGTAGTATTGCAGTAAGTGAAATCTTCAGACTTGAATGTGTGGGGAAAGATCTAGGTAAATGTAGCTAAGTCATCAAGGAAATGAATGAAAGACTTAATAGCTTCCTCAGAAGGAGATATGAGATAAGCGCTGGCCGCCAAATATCAGTACACTCTATTTCAAGAGGATAAGTGGACGAGTGAAACGGAGGTGAGGCAGTGTATGACACTTCCCTTCTTTTGTCAGGCATGACATGAAACAGTATCTCCTTTAACTGAACAATCAAGAAACAAGGTCATGGCTTTCTTAATTACTCTGAAAGTCGTGTCCCAATTGTAACTGTAAGTGCTGCGAGTAAAATTGGATATATTGTAACAACTCAAGGCCACCGGTAGTAGATATTGTCCGCTTTGTCCCATTATGTATCGCCGTCAGCCTCACGGTTCTAAAACGCGTCTGTTAGGGAGAGGTTTCCACACCCTTATAAAGAATGCTTTGTTCCCCTCCCCAACAGATGTGGGATCTCACAATCCACCCCCCTTCGAGGCCTAGCGTCCTCGTTGGCAATCGTTTGGTGTCTGGCTCTGATACCTTTTGTAATAGTCCAAACCCATTGCTAGTAGATATTGTCCGCTTTGGCCCATTACGTATCGCCGTCAGCCTCACGGTTTTAAAACGTACTAGGGAGAGGTTTCCACACTCTTATAAGGAATGTTTCGTTCCCCTCTCCAACCGATGTGGGATCTCACAATCCACCCCTTTTAGAGGCCCAGCATTAGAGTCCGACAGCGGTTAGTGTGCCAACGAGAGATACAAATTTCACATGTGAGTGAAAAAAGTACAAAACGGATAATTAAAAAAATAACTTAACCATGCTCCAACGTTGAACAAAGAACATAGTTGTTGTGTATAAAAGTTCCAATAGAATTCTTACTTTTGAAATTGGATCATTGGAATATATCTTATAGAAACCAATGATGACTTAATCCATCATGTCTGTGACATGGGAAGGCCGTAGGAATATATATTACATATAGAAATTGTGCACCGTTCATCAGCCCTCGTGAAAAGCAGTGAATTGAATTTTATGGCCCTTCTATCTAATACTGCTTTTCATATCAGGAATCTGGCGTGGGTGGATTGAACAGCAAAACACACATGAAGCTGTTGCTGAAATGGATGAGGGGAAGGAAGATGCTGCAGCTTTTCTGCAACCAAGTTGGTTCGAACAAGAAATTTCTGCTCGCCACGCCCAATGATCCTCGAGCAGAAGAGTTGAAGAGTGCTTCAGAACCAGTAGTCCAGAGACGAAAGAAACAGAAGGCACGAATAAGGAGGAAAAAGGCATCAAAATAAACTTTTGCCAACGTCCATGAGTTTACGATGCCGATGCAGTCGATGGACTACCCTCGGACTTGTTAGTACTGATGGCAGGCTCACGACTTATGACGGTGAATTTATGAGTTTCTGCCATCACTGTTTTCCCCCAAATTTCAACTCTTTTGGGTGTTATGCAAGGTTTCTTTTGAACATTTCACGTTGACTTGGTTTCCATGCATTGACTGACAAACATGCATTTGAATCGTGGTTGATAAAAAAGCATGGATTCGGATGTCTCATTGGATTAAACAATTTAAGTCAAATAAAAATCTTAAAATTTTAGAATAGGA

mRNA sequence

ATGTGGTGGCTTCGCGGTATTCAAACAATTAGAAATGCAGATGGAGGTGGAGGTTCTGCTGGCCTTGTTTTCAGCACATTCGCGAGGTATTTCTCGAGGTCGCGAGCAGAGAATCTTAGGAAAATCAATCCCAAGTTGACCCCTCAGGAGGCTTCTTTGGTTGCTCAAGATCTCTATGGTGTCGTCAAGCAGCATGGACCGCTCACAGTTTCCAATGCTTGGATTAAAGCCCAGGAATCTGGCGTGGGTGGATTGAACAGCAAAACACACATGAAGCTGTTGCTGAAATGGATGAGGGGAAGGAAGATGCTGCAGCTTTTCTGCAACCAAGTTGGTTCGAACAAGAAATTTCTGCTCGCCACGCCCAATGATCCTCGAGCAGAAGAGTTGAAGAGTGCTTCAGAACCAGTAGTCCAGAGACGAAAGAAACAGAAGGCACGAATAAGGAGGAAAAAGGCATCAAAATAAACTTTTGCCAACGTCCATGAGTTTACGATGCCGATGCAGTCGATGGACTACCCTCGGACTTGTTAGTACTGATGGCAGGCTCACGACTTATGACGGTGAATTTATGAGTTTCTGCCATCACTGTTTTCCCCCAAATTTCAACTCTTTTGGGTGTTATGCAAGGTTTCTTTTGAACATTTCACGTTGACTTGGTTTCCATGCATTGACTGACAAACATGCATTTGAATCGTGGTTGATAAAAAAGCATGGATTCGGATGTCTCATTGGATTAAACAATTTAAGTCAAATAAAAATCTTAAAATTTTAGAATAGGA

Coding sequence (CDS)

ATGTGGTGGCTTCGCGGTATTCAAACAATTAGAAATGCAGATGGAGGTGGAGGTTCTGCTGGCCTTGTTTTCAGCACATTCGCGAGGTATTTCTCGAGGTCGCGAGCAGAGAATCTTAGGAAAATCAATCCCAAGTTGACCCCTCAGGAGGCTTCTTTGGTTGCTCAAGATCTCTATGGTGTCGTCAAGCAGCATGGACCGCTCACAGTTTCCAATGCTTGGATTAAAGCCCAGGAATCTGGCGTGGGTGGATTGAACAGCAAAACACACATGAAGCTGTTGCTGAAATGGATGAGGGGAAGGAAGATGCTGCAGCTTTTCTGCAACCAAGTTGGTTCGAACAAGAAATTTCTGCTCGCCACGCCCAATGATCCTCGAGCAGAAGAGTTGAAGAGTGCTTCAGAACCAGTAGTCCAGAGACGAAAGAAACAGAAGGCACGAATAAGGAGGAAAAAGGCATCAAAATAA

Protein sequence

MWWLRGIQTIRNADGGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRGRKMLQLFCNQVGSNKKFLLATPNDPRAEELKSASEPVVQRRKKQKARIRRKKASK

Homology

[Close]

BLAST of CmaCh02G009630 vs. TAIR 10
Match: AT1G73940.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49410.2); Has 54 Blast hits to 54 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 137.5 bits (345), Expect = 9.1e-33
Identity = 77/148 (52.03%), Postives = 96/148 (64.86%), Query Frame = 0


Query: 13  ADGGGG-----SAGLVF-------STFARYFSRSRAENLRKINPKLTPQEASLVAQDLYG 72
           A GGGG      A  +F       S   RY SR RA N+RKINPK+  QEA  ++  LY 
Sbjct: 4   AGGGGGLRKLCRASAIFDNEISYNSLLVRYMSRERAVNVRKINPKVPIQEAYAISNSLYD 63

Query: 73  VVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRGRKMLQLFCNQVGSNKKFL-L 132
           + K HGPL+V N W++AQE+GV GLNSKTHMKLLLKWMRG+KML+L CNQVGS+KKF   
Sbjct: 64  LFKLHGPLSVPNTWLRAQEAGVSGLNSKTHMKLLLKWMRGKKMLKLICNQVGSSKKFFHT 123

Query: 133 ATPNDPRAEELKSASEPVVQRRKKQKAR 148
             P DP  E+  +  E   Q  KK++++
Sbjct: 124 VLPEDPLQEQPAAPIENKKQAVKKKRSK 151

[Close]

BLAST of CmaCh02G009630 vs. TAIR 10
Match: AT5G49410.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G73940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-17
Identity = 36/99 (36.36%), Postives = 60/99 (60.61%), Query Frame = 0


Query: 23  VFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGV 82
           V     R+F+      ++ I     P++   + + ++ ++K HGPLT++  W + +E G+
Sbjct: 16  VVGMLTRHFATKPKPKMKPIELNTPPEQTQTITRVIFDILKDHGPLTIAETWDRVKEVGL 75

Query: 83  GGLNSKTHMKLLLKWMRGRKMLQLFCNQVGSNKKFLLAT 122
            GL SK HMK++L+WMR R+ L+L CN VG +K+FL  T
Sbjct: 76  RGLTSKRHMKIILRWMRERQKLKLICNHVGPHKQFLYTT 114

[Close]

BLAST of CmaCh02G009630 vs. TAIR 10
Match: AT5G49410.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G73940.1); Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-17
Identity = 36/99 (36.36%), Postives = 60/99 (60.61%), Query Frame = 0


Query: 23  VFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGV 82
           V     R+F+      ++ I     P++   + + ++ ++K HGPLT++  W + +E G+
Sbjct: 16  VVGMLTRHFATKPKPKMKPIELNTPPEQTQTITRVIFDILKDHGPLTIAETWDRVKEVGL 75

Query: 83  GGLNSKTHMKLLLKWMRGRKMLQLFCNQVGSNKKFLLAT 122
            GL SK HMK++L+WMR R+ L+L CN VG +K+FL  T
Sbjct: 76  RGLTSKRHMKIILRWMRERQKLKLICNHVGPHKQFLYTT 114

The following BLAST results are available for this feature:

BLAST of CmaCh02G009630 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh02G009630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73940.1	9.1e-33	52.03	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G49410.1	1.1e-17	36.36	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G49410.2	1.1e-17	36.36	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..155
None	No IPR available	PANTHER	PTHR35110:SF1	EXPRESSED PROTEIN	coord: 7..151
None	No IPR available	PANTHER	PTHR35110	EXPRESSED PROTEIN	coord: 7..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G009630.1	CmaCh02G009630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane