CmaCh02G009550 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G009550
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	E3 ubiquitin-protein ligase MARCH2-like isoform X2
Location	Cma_Chr02: 5679159 .. 5684382 (+)
RNA-Seq Expression	CmaCh02G009550
Synteny	CmaCh02G009550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGATTGCCATTTAAATGATGTAAAAGGCAACACCAGCGCCGAAAAGAACAATGAAGCGGACCTTGAGAAGCAGAGGGTTGAGCTGCCGTCAGCAGCAGATCCCTCTACCAGTGATGTCGATGATCATACACCATTGACAATTGTTGTGTCTAATGGGGAACTTAAATCAGTCTCTGAGGTTCCTCGAGAGAAATTATTGCCTTGTGCAGTTTCCCCCATGAAGGAACTCTTGTCTACAACTTCTAGCTCTGATGAGCAGTGCAGGTACTTTTGAATCGCTACTCTTCCCTGAAAACTGTTCTGTTCATTTCTGCTGGTCCATTTTGGCATCACTTTTAGTTGGTTCCTCCTCCTTTCTTCCTTAAACTGTTGTTTATGTTGTTTTGCTTGTCAGCCATAGAACATTTAGATACTCCCTAAATGATGTTTTAGCCTATTCTATAAGATTAAAATCGTTAACATGAGCATAGCTTAATTGCTTTAACCTTAAGGTTTAAGGTTTGTGTAACAACCCAAGCCCACCGCTAGCAGATATTATCTTCTTTGGAGCTTTCCCTCAAGGTTTTAAAACGCGTCTCCCCCCTTGGGGGTCCAATGTCCTTGCTGGCAAACCGCTCGATGTCTGGCTCGATACCATTTGTAACAACCCAAGCTCACCGCTAGTAGATACTGTCCTCTTTGGGTTTTCTCTTTCGGGCTTCCCCTCAAGGTTTTGAAACGCGTCTACTAGGGAGAGGTTTCCACATCCTTGTAAGGAATGCTTCATTTTCCCCTCCAACCGATGTACAATCTCACAATTCACCCCCTTGAGGGCTCAGCGTTCTCACTAGCGAACCGCTTGATGTCTGGCTCTGATACCATTTGTAACAGCCGAAACCCACCGCTAGCAGATATTGTCCTCTTTGGGTTTTTTCTTTCAGGCTTTCTCTCGAGATTTTAAAGCGCATCTTCTAGAGAGAGATTTTCACACCCTTATAAGTGCACTAATGATCTGGCCTATGTTCAAGTCTCAACCGATGTGGGATTTCATAGTTCAAGTCTCCACCGCTCATTAGTGCACTAATGATTTCATAATGCTATTGGTTTTCCTTTTTGGAGATCTGGCCTATGTTGTACATTATAAATAACATTCTACCAAATGCTGTTATCTTTCCATGCATTATAGTGGGGTATGTCCACAATAACAATTGGCTTCATTTATCTGGTTAATGTGTTGTAAAGGATGTTGAGGCCATTAAACCTGAGTACTATTATACAGAATTTGTCAGCAAGAAAAGGAAGAAGTCTTGATAGAACTTGGATGTCATTGTCGAGGTGGTCTCGCAAAAGCTCATCGGACTTGCATAGATACTTGGTTTCGTAGTAAAGGATCAAACCGATGTGAGATTTGCCAGTAAGTTAGTCGCTTTGAGGTCGACCTTCATTGACTTAACAGAATCATATTGTTTTGGAGCCACTTTGAAATGTTATTTTGCTAACTTCTTCAGGGTTGTAGCAGCGAATGTATCACCTCCACAATCACATCATGCTGTAGGTATTCTGTAGCTTTTGGTGCAATGCTTTTGATTTGGTGCCTTAGTTTTGCATTTGCTACATTTTCTTGCTTCCATGAATGTTCGGGTCAACTTGTGTGTACCTCAACTGTTCTTTGATCATCAAAGTAACCTCGAAACTACATACAAATAAACCGAACTTCTAAACTAATTACATGGCTTTGAAAATTCTTACGGTTCCGTTTTCATTAAACAGATAAGTACCTATAAATTCAAACTATTTATTCACAAGAATCGCAGTTTAAAACTATATATTTAGCATTGAACTTATGATCTTGATGGAAGGATATCGTATTGGAACTAACCCGAGTTTCAATTATTTCTTGAATTTGAAAAACACAGACCAACTACTGGATTTGGAGGATTGATCCAACCTACAGAACCCAAGAGCCTGAAAGGGTAAGAATCTCACTTTTCGTGCTTGTTTAATAAGTGGTTAAGAAATCATATCAGTGCAACTTATTTCTAGTTTGAATTAGTTATGGAATATATGATATTCGTAATCTTGAAGAATATATTAGTTAGGAAATATATTTTAGATATTAGTAATTAGTTAAATTTGAATAGTACTATATTTTATTTTATTATCAAGATTTAGTTAGCTTATATTTTCTTTGTAGATATTATTTAGTATCTTGTATCCTATTTAAAGGTTGTATTTCTCAATATTCTATTTCTCATTCGTAGATCTGTATTGTTTCGTTGAGTAATAATATTTTCATATCTATTCACACTTTTAAGTGGTAGATATTTCGTCAGTTGGTATCAGAGACAATGGTTTGATATTATTACTCAACGAGAGGAATGGTGGAAGTGCTTCGATGGGTATAGCTATGGAAAAGCTTGTTGGCAATAACTATAATTATTGGAAGTTATGTATGGAAGCTTATCTGCAAGGGCAAGATTTGTGAGATTTAATTAAAGGTGATGACACAGAAATTCCAGCAGATACTTTCACAAAATCCAAAATTACGCCAACAATAGAAGATCAAATTCGGAAAAACCTTATTTACCTTGCGAACTTTGATTAGCAAGGAGTATATTGATCATGTTCGTGATTTAAAGTCACCAAAGCAAGTATGGGATACACTTCAAAAGTTGTTCACTATGAAAAATACCGCTCGACTGCAATTTCTAGAGAATGAACTAGCTATGGTAACTCCAGGAAAATTACCTGTTGAATAATTTTTTTTTAAAGTGAAAAATTTGTGTTCTGAAATTTCATAATTAGATGCTGATGAGTCAGTAAATGATGCTCGATTATGGCGTTATCTTATTCGTAGATTACGAAAAGAGTTTATGCCTTTTGTTTCCTCAATACAAGGGTGGGCAAATCAGCCTATAGTTATTGAACTGGAGAATCTTCTTTCCAATCAGGAAGCCTTGATTAAGCAAATGACTAGGAGCAACAAGTCTTCCCCAAAGTCAGAAGATGTGTTGTATGTCAAAGATCAAAGAAGACAGATTTTTCATTCAAAGCCTTCATCAAGCAAGGGGAATCAATTCAGAAGTGAGGAGTCGTCAAAGAAGTCATTTAAAGCTTGTTACAGGTGTGGAAAACAAGGCCACTTTAAATGAGATTGTCAGGCGAAAGTGGTGTGTGATCGTTGCAGAAAGCCAAACCATATTAAGCCAAATTGTCGAATCAAAATCCAAGAATCAGAAGCAAATGCTGTACATGGAAGTAAAAATTCTTCAGATCCAATTTGGGAATACTGCTTAACCACTGAGGTTCTTGATCAGCCAACAAACGTGACTTCAGCCGTATATGAAGATGATGTCTCTACAGGGGATCAAAATTCTAATTCTGCTACTTATGCTTCTAAATTTGATTCTCTCCAAATTTCGCCTTTGCACTCTTTTTTGTACTCTGATGCCAATTCTGCTGCCCATGGTGACCCTTCTGTTTATTTCACGGCCTTGAATTTGGGATTCGACGTAAACGAAGATTTCAAATTAACCTTTGGCGATCTTGACGCCTCTGAGGCTGACGTTTTTCTCATCTCCGAAGATTTTGATCAAACTACCAATTTGTTAGACTTGCAGGCTGATCGAGAAGCTTTTGGGGGTGCTGCTGAAAGTGAGAATCTAGACCAAGTTTAGAAAGGCAGTGTTGTGGTAGAGGCTGAGTTGTTGGATAAGAGCATGAATGTGGCTAAAGAGAAAGAAGCTTGCAGGGATGATGCTGGTTTATCATAAAGTCGGGATGTATCGATTGATTTGGGGAATTGTACTAAGGATGAACGTGATGTTGTGGTTGACGAAGGTGACAAATTGGAAGATAGTTTGGTTGGTGAAAGAGAACACGGTAATGGGATGGATGACAAGAACTTGTTAGAATCCTCTGTTCAGTTGGATGACGATTGCAAGGAAAGCAAGGGCCTCGATCAAGAAGTGAAGACCAGGAATTTTGATGTATCAGATAAAAAGGTAGAAAAAGAAATGTCAGATGGAGAGACAACAAAAACTACCAAGGCATTGACTCAAAATTTTAGAGATAAATGTACAAGGGTGGCAGAAACTTCAAAAAATAAAAAGAAGAAGAGTGGAAGGACTGCTCGAGAAGAAGATGATTTGGATAAGATTCTTGCTGAGCTAGGAGAGTGGCCTACTATATCAAAACCTACCGACCCTCCTCTTTCTTCACAAGAGGCCAAAGTTGAGAATCCACCTGACCTTGTAACTCCTCTTGATGCATCAGTTGAAAAGGAAGCTGAAGAAGAGAGCACAGAAACGACGGTCATTAGGAAGAAGAAAAGGCGTAGGCAAAAGGAAAGAGAAAAAGAGAAGCGGCTAAAGAACAAACAAGAAGGCAAGCTGTTAACAGGGAAACAAAGTGAAGTTTGAAATTTTTCGCTCTCGGAGTTATTGAAAAATAAGCTTGCACTAAGGGAGGATATCAGCATTTAGTGCAACTTATTTCTAGTTTGAATTAGTTATGAAATATATGATATTCGTAATCTTGACAAATATATTAGTTAGGAAATATATCTTAGATATTCGTAATCAGTTAAATTTGAATAGTATAGTAGTATATTTTATTTTATTATCTAGATTTAGTTAGTTTATATTTTCTTTGTAGATATATTTAGTTTCTTGTATCCTATTTAAAGGCTGTGAACAATGAAATTTAACCTTCGATCCCAATTCTATTTCTTATTCTTATATTTGTATTCGTTTCTTCGTTGAGTAGTAATATTTTTCATATCTATTTACACTTTTGAGGGTAGATATTGCGTCACATCAACCTTGTGTGTTATTTATGCAGCAGCGCTACTTCAGTCCACTTTGGCTAGCTTTTGCCATCCTCATCGGAGGTCTGCTACTGGACATTCTTGTATCCATCACCCTCGGCATTTCGGCGTTACCTGTAAATATCATCATTGGTACGTTTATAACTTTCATCGTTCGAGCTATCGAGTTTCATGTTATGTTTTTATTTATGGTTGTGAAACCTGGAAGAACAGGAGTTATTGTAGTGCTTGGCCTTGGAACTGTTTTAAGACTTGCCCTGGAGTTCTTTCAAGAGTGGAATTCAACAAGAGGATCGCAAAGGGTGGAATCAAATGTCACTATTGGGTACTTTCCAGCTATATAGTCTTCAAATTCAAAACAACAAACATAGTGAAAACAGGTTTTATTCTCGTCTTTTCCGACCTGTTTTAG

mRNA sequence

ATGTCGGATTGCCATTTAAATGATGTAAAAGGCAACACCAGCGCCGAAAAGAACAATGAAGCGGACCTTGAGAAGCAGAGGGTTGAGCTGCCGTCAGCAGCAGATCCCTCTACCAGTGATGTCGATGATCATACACCATTGACAATTGTTGTGTCTAATGGGGAACTTAAATCAGTCTCTGAGGTTCCTCGAGAGAAATTATTGCCTTGTGCAGTTTCCCCCATGAAGGAACTCTTGTCTACAACTTCTAGCTCTGATGAGCAGTGCAGAATTTGTCAGCAAGAAAAGGAAGAAGTCTTGATAGAACTTGGATGTCATTGTCGAGGTGGTCTCGCAAAAGCTCATCGGACTTGCATAGATACTTGGTTTCGTAGTAAAGGATCAAACCGATGTGAGATTTGCCAGGTTGTAGCAGCGAATGTATCACCTCCACAATCACATCATGCTGTAGCTTTTGCCATCCTCATCGGAGGTCTGCTACTGGACATTCTTGTATCCATCACCCTCGGCATTTCGGCGTTACCTAACAGGAGTTATTGTAGTGCTTGGCCTTGGAACTGTTTTAAGACTTGCCCTGGAGTTCTTTCAAGAGTGGAATTCAACAAGAGGATCGCAAAGGGTGGAATCAAATGTCACTATTGGGTACTTTCCAGCTATATAGTCTTCAAATTCAAAACAACAAACATAGTGAAAACAGGTTTTATTCTCGTCTTTTCCGACCTGTTTTAG

Coding sequence (CDS)

ATGTCGGATTGCCATTTAAATGATGTAAAAGGCAACACCAGCGCCGAAAAGAACAATGAAGCGGACCTTGAGAAGCAGAGGGTTGAGCTGCCGTCAGCAGCAGATCCCTCTACCAGTGATGTCGATGATCATACACCATTGACAATTGTTGTGTCTAATGGGGAACTTAAATCAGTCTCTGAGGTTCCTCGAGAGAAATTATTGCCTTGTGCAGTTTCCCCCATGAAGGAACTCTTGTCTACAACTTCTAGCTCTGATGAGCAGTGCAGAATTTGTCAGCAAGAAAAGGAAGAAGTCTTGATAGAACTTGGATGTCATTGTCGAGGTGGTCTCGCAAAAGCTCATCGGACTTGCATAGATACTTGGTTTCGTAGTAAAGGATCAAACCGATGTGAGATTTGCCAGGTTGTAGCAGCGAATGTATCACCTCCACAATCACATCATGCTGTAGCTTTTGCCATCCTCATCGGAGGTCTGCTACTGGACATTCTTGTATCCATCACCCTCGGCATTTCGGCGTTACCTAACAGGAGTTATTGTAGTGCTTGGCCTTGGAACTGTTTTAAGACTTGCCCTGGAGTTCTTTCAAGAGTGGAATTCAACAAGAGGATCGCAAAGGGTGGAATCAAATGTCACTATTGGGTACTTTCCAGCTATATAGTCTTCAAATTCAAAACAACAAACATAGTGAAAACAGGTTTTATTCTCGTCTTTTCCGACCTGTTTTAG

Protein sequence

MSDCHLNDVKGNTSAEKNNEADLEKQRVELPSAADPSTSDVDDHTPLTIVVSNGELKSVSEVPREKLLPCAVSPMKELLSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRTCIDTWFRSKGSNRCEICQVVAANVSPPQSHHAVAFAILIGGLLLDILVSITLGISALPNRSYCSAWPWNCFKTCPGVLSRVEFNKRIAKGGIKCHYWVLSSYIVFKFKTTNIVKTGFILVFSDLF

Homology

[Close]

BLAST of CmaCh02G009550 vs. TAIR 10
Match: AT2G45530.1 (RING/U-box superfamily protein )

HSP 1 Score: 156.4 bits (394), Expect = 3.0e-38
Identity = 93/191 (48.69%), Postives = 118/191 (61.78%), Query Frame = 0


Query: 14  SAEKNNEADLEKQRVELPSAADP--STSDVDDHTPLTIVVSNGELKSVSEVPREKLLPCA 73
           S+  +   DLEKQ+ +      P   +   ++   LTIVV NG+        RE+L+   
Sbjct: 3   SSSSSGGDDLEKQQQQQQKDKSPQKQSESANESNHLTIVVCNGDSS------REELVG-Q 62

Query: 74  VSPMKEL-LSTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRTCIDTWFRSKGSNR 133
           + P KE+ LS   SS EQCR+C Q+KEEVLIELGC CRGGLAKAHR+CID WFR+KGSN+
Sbjct: 63  IPPEKEVSLSRNGSSHEQCRVCLQDKEEVLIELGCQCRGGLAKAHRSCIDAWFRTKGSNQ 122

Query: 134 CEICQVVAANVSPPQSHHA--------------------------VAFAILIGGLLLDIL 176
           CEICQVVA NV+PP++                             VAF+ILIGGL+LD+L
Sbjct: 123 CEICQVVAVNVTPPETQPTTNYWVWRIDPSYRQEERERGCFSPLWVAFSILIGGLMLDVL 182

[Close]

BLAST of CmaCh02G009550 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-11
Identity = 32/63 (50.79%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 82  TSSSDEQCRICQQEKEEV---LIELGCHCRGGLAKAHRTCIDTWFRSKGSNRCEICQVVA 141
           T+  ++ CRIC    E      IELGC C+  LA AHR C +TWF+ KG   CEICQ VA
Sbjct: 77  TAPPEKDCRICHLGVETSGGGAIELGCSCKDDLAVAHRQCAETWFKIKGDKTCEICQSVA 136

[Close]

BLAST of CmaCh02G009550 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-10
Identity = 29/65 (44.62%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 83  SSSDEQCRICQQE------KEEVLIELGCHCRGGLAKAHRTCIDTWFRSKGSNRCEICQV 142
           S S+  CRIC         +  V IELGC C+  LA AH+ C +TWF+ KG+  CE+C  
Sbjct: 73  SQSERDCRICHMSLDAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGS 132

[Close]

BLAST of CmaCh02G009550 vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 60.1 bits (144), Expect = 2.9e-09
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 86  DEQCRICQQEKEE-----VLIELGCHCRGGLAKAHRTCIDTWFRSKGSNRCEICQVVAAN 145
           DE+    ++E+EE     + ++LGC C+G L  AH  C +TWF+ KG+  CEIC  +A N
Sbjct: 110 DEEDEEEEEEEEEEEYYGLPLQLGCSCKGDLGVAHSKCAETWFKIKGNMTCEICGAMALN 169

Query: 146 VSPPQSH 148
           V+  QS+
Sbjct: 170 VAGEQSN 176

[Close]

BLAST of CmaCh02G009550 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-08
Identity = 27/67 (40.30%), Postives = 35/67 (52.24%), Query Frame = 0


Query: 80  STTSSSDEQCRICQQEKEEVLIE------LGCHCRGGLAKAHRTCIDTWFRSKGSNRCEI 139
           S   S ++ CRIC    E    E      LGC C+  L   H+ C DTWF+ KG+  CEI
Sbjct: 69  SIRGSPEKDCRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNKTCEI 128

Query: 140 CQVVAAN 141
           C+ +A N
Sbjct: 129 CRSIAQN 135

The following BLAST results are available for this feature:

BLAST of CmaCh02G009550 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh02G009550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45530.1	3.0e-38	48.69	RING/U-box superfamily protein	[more]
AT2G37950.1	2.4e-11	50.79	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G05830.1	1.2e-10	44.62	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G59000.1	2.9e-09	41.79	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.2	1.4e-08	40.30	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 88..135 e-value: 1.4E-14 score: 64.5
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 89..134 e-value: 8.6E-11 score: 41.8
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 81..141 score: 19.423166
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 75..143 e-value: 7.5E-15 score: 56.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..29
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 59..148
None	No IPR available	PANTHER	PTHR46214:SF16	E3 UBIQUITIN-PROTEIN LIGASE MARCH11 ISOFORM X1	coord: 150..175
None	No IPR available	PANTHER	PTHR46214:SF16	E3 UBIQUITIN-PROTEIN LIGASE MARCH11 ISOFORM X1	coord: 59..148
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 150..175
None	No IPR available	CDD	cd16495	RING_CH-C4HC3_MARCH	coord: 89..135 e-value: 2.36872E-12 score: 58.1076
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 84..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G009550.1	CmaCh02G009550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding