CmaCh02G009060 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G009060
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Pectin lyase-like superfamily protein
Location	Cma_Chr02: 5398150 .. 5405660 (-)
RNA-Seq Expression	CmaCh02G009060
Synteny	CmaCh02G009060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTTTATTTAAAAATGCGTTTCTTTGCCGATCTCTGATTCTCTGGTTACTGCTCTCTCTCTCTCTCTCTAACCATTTCCATTAATTATCTTCTCCATTTCGCACCATTCTTGGATTCTTCTTCGTGTCCTAACTCCCAGATCTACTCCCCCTTCTTCCCATCTTCTTCTTCTTCTTTAAAATCTTACTTAAATCCCTCAAAAAGCGTTTCTCCACTCTTTTCTCTTTGTTCTCTTTCCCATTTCTCCACCATGTTGCCGTTTTTCCTCTTCATTTTCATCTGCTTCGATGCTCTTTTGTCCCCTCCTCTTGCCGCCGGCGAGCTCACTACCTGCTCCGGGATAGTTCCCATGAAGTACCGGAGCGACAAGATTTCCATTGCCGACTTTGGGGGTGTCGGCGATGGCCATACATTGAACACTAGAGCATTTCGAGCTGCGATCTATCGAATTCAGCATTTGAGAAGAAGAGGGGGTACTTTGCTTTACATTCCTCCTGGGGTTTACTTGACGGAGAGCTTTAATCTCACTAGCCATATGACTCTGTATCTTGCAAAAGACGCTGTTATCAAAGCTGTTCAGGTATATGCTTCTTACTGAACTTCTTTGTTGTTTCTCTTATTTGTGATTCAGTAGTGTGGCTAGTGTTGGTTGTTGTTGAATGAGAGAATTTTCCTGATTTTTCGCTGGTGATTCTCGTGCTTAGGGTTTCTTTTGTTTGGTGATTCTGATTTTGAGCTTATTTTTGTCGGTGATTATGAATGGTTTCTAGATTAGGGGATTGGGATTTATCAGAATGAACGTGTGTTCTGGTGGGTGGGTATTCGATTAAGCTGTGGCATGTGCATCCACTCTAAATTAATAACATTATATATATAATTATGATTGGACCGTCTACAGGCTGTTCTTTGTCGGATTCTGATGCTAAATTTTTATTAGAATGTGATCCCATTTTAGTTGATTGATCCGTTCAAAGTTCTGATTTGCTAATTTGTGATTATTATTTTGCTGATCTGGACATCAATTTCAAGCAACCAAAATTGGCTGTCCCATAGTTGAAATATCTATGTCAAAACATTGGTTGATTCTTTTAACAAGGATGATGACAATGTTATTAATTAGTTGTAGTAATTACTTAATCAATGTCTATTTCAGCTAGCAAACAGGCCAGAAAGGATCTGTTTTAGGCAATCTGATCCTTTTCTTAATCTTCTTTGTTTTTGTGAGATCCCATGTTGGTTGGAGAGGAAAACAAAACGTTACTTATAAGAGTGTGGAAACCTCTCCGTAGAAAATGCAGTTTAAAACCGTGAGGCTGACGACGATACGTAACAAGTCGAAGCAGACAATATCTGCTAGCGGCGGGCTTGGACTTGTACAAATGGTATCTAGTCGGAGTAGGGCTAGACTATCTCCATAGTAGACGCGTTTTAAAAAACATGAGGTTGATAGTGATATGTAATGGATCAAAGCGGACAATATCTACTAGCGGTGGGCTTAAGCTATTACAGTTTTCCCCGAAGGAACTTTACCTATTTCTCTGGTACTTGAAGTAAAATGGGTGGAAATTATGTCAAGATTTTGAAATTAGAACTGTTATATGTTGTCAGTGTCTAAAATTTGACTCCTATATGATTACCCGCTTCCAATAAGCATTTTTTTAATTCTGGGTCTGTGTGCATGCCAATGGATGGTCAATTTAGTGAGTGCAAGATCTTTGGTCTAAGATTTTTTCACCATTCCTGTTACTGTCTCCATCAACTTCTCGATGATGTAATTTTCTGCAGATGATGACAATTGTCCGATCTTTTCATAAAATTTCTCCTTTTTTAAACTAGTTTAATCCTTCACTTTTATTGTTTTACTTTTGTATTAAGCTTCTGTTTTTTTTTCTCTGTTTGATGTCCAGGATTCTTCAAATTGGCCAGTGATCGAGCCGTTGCCATCATATGGAAGAGGAAGGGAGCGCCCTGGTGGAAGATATGTAAGCTTTATTCATGGAGATGGTGTTCATGATGTGGTGATCACTGGTATGAATCATCTAGTTCTTTTAAAATGTATATTAAGGCTATTGCAAACCTGGTTTACTTGTGTTGTTCTTGGAACAAAAGTATGTATATTAATAGCCCGAGTTAAATTGATGTGGTAGGTGAGAATGGGACCATTGATGGCCAAGGTGATGTCTGGTGGAATATGTGGAGGACAAGGACTCTGATGTACACTAGGCCTAATCTTGTTGAATTTATCAATTCTCATAATATCATCATCTCCAACGTAATGTTCCTGAACTCCCCGTTTTGGAACATTCATCCAGTTTACTGCAGGTATGAATTAAAGTCGTTTTCAATCATGTTTCAACTCCTCTTAAATGTTCATCATATTTTCTACTTTTCTCCAACCAAAAACGCTTTTAACTTGTGAGATCCTATGTTGGTTGGAGAGGGGAACAAAATATTCTTGATAAGGGTGTGAAAACCTCTCCCTAGTAGACGTATTTTAAAACTGTGAGGTTGATGGCGATACGTAACAGGCCAAAACGGATAATATCTATTAAGGTGGGTTTGGGTTGTTACAAAAGGTATCAGAGCCAGTCACCGAGTAGTGTGCCAGCGAGGACGTTGTACCCCAAAAGGGGGTGGATTGGGAGATCCCACATTAGTTGGAGAGGAGAACGAAACATTTCTTATAAGGGCGTGGAAACCTCTCCCTAGTAGATGTATTTTAAAACCATGAGATTGACGGCGATACGTAACAAGCCAAAACGGATAATATCTGCTTGTGGTTGGCTTGAGCTGTTACAGAACTCCTTTGGGAGTAATATCAACCGTGTCTGCATCACAATGATATAGCTGAATCTTACTTTTATCTTAATCTTCTGTTGCAGTAACGTTGTTGTCAGATATGTCACAATATTGGCTCCTCGTGATTCCCCGAACACCGATGGAATCGATCCAGGTGCATTTTCCGATCCTTAAGGACATATCATGTAGTTATTAGCTCCCCCACCCCTGGTCGACCTCTGGTTAAAATAATTGCTTACTACAAGTCATGTTCAAAATTCTTATAACATTAGTTCTGTATATGCCTGAAAGTAACAAAACTTGTCAAACTGATGAACTCAGATTCAAGCAACAACGTCTGTATAGAAGATTCCTACATTTCAACTGGAGATGATCTTGTGGCTGTGAAGAGCGGATGGGACGAATATGGTATCGCTTACGGTCGTAGTAGTTACGACATTACCATCCGAAGAATATCAGGGTCAAGTCCATTTGCTGGAGTTGCTGTAGGAAGCGAAACCTCCGGTGGTGTGTCAAATGTATTTGCAGAACACCTAAGCTTATACGACATGGGAGTTGGTATCAACATCAAGACAAACATTGGAAGAGGGGGGTTCATAAAGAACATAACCATATCGGATGTCTACATGGAGAGTTCGCGAAAGGGTCTAAAGATTGCGAGCGATACCGGAGATCATCCTGACGACAAGTTTGACCCGAACGCTCTTCCAATCGTCAAAGACATCACAATTAAAAACGTTTGGGGTGTGAATGTGCAGCAAGCAGGTTCTATATATGGCTTGAGGAACTCCCCATTTACTGGTATATGTCTTTCGAACATTAACCTTCGTGGCACAGCGAGACCGAGATCAGTACCGTGGACTTGCTCGTATGTAAGTGGGGCAGCTCTCTTGGTTAGTCCATGGCCATGCTCAGAGCTTACCAGCACACAGCAGGATGGTTTGTGCTCCAATAACTTCTAAACACATCTACTTTGTATATTTCGTTGTTTAAACCTATGAAATTTGGCTTCGTGTTTGTTGTAGCTATATCCCATTTCACCGGCAAAGGTCAATGGGGATTAAAAGAGATTAAATTACAAATTTGGTCTCAATGGATAGAAGAAAGTTTGTTTTAAGAGTTATAATTTATCCTTATATTTTTTTATAAAATTTCATAAATAGAAAGGGATTATTTGCAAGATTATTTCGTGTATCATGGACATATTATATCAAAATTTAAAAATAATAAGGAGTAATAATTTTCTAATAGTAATGTATAATTCTTTTTTATGTTAGATAAACCTAGAAATAATCTATTAATAATTATTAGTTATATAAATAGGCGTGGTTTTTTTAATAAAAAAATATATCATATTTATAAATTATTTATTTGTGTAATATATTTAACCATAATTAGTTAAAAAGTTCCCAACCAACTTTCCGTACAAATTGTTCGTTGTCAATGTTGTCTTGTGGGTGGGCCTTCAGATCCATCTGAAAGCCCAATAAATAGACCTCATTTGGGCCTCAATGGGCCGCACGCCATAGGAGTGAAACTTTTGAACAACGGCCACTCCTTGTCGTTCCAAGTGCTGCTCTCTCAGTTTGGCGCCGAAGTTAGTTTTGTTCTCTGGGTTTATTAGGGCCGTTGATTTGGGGTTCAGTTTGTGGTTCTTCTTAGCAATGGCTTCTTCACCTCCTTCAAAACGCCGGCGTAAAAACCTCGCCATTGATGACGCCTTTGAGACCTTACTTGCAACGTCTTCCTCGGGTAATAGATTGTCCCCTGTAGTCGTTTTCGCTCACGGTGCTGGTGCCCCTTCTTCTTCTGAATGGATGATCAGGCATTTCTCTTTTCTTTTTCTTCGTCGTTCTTTTTTGTTCGTCTTTCCATTTTCCGATTGCCTCCGTCGATTTCTTTCTCGTACTCGCTCTTTTTGGAGTTGTTTGTAGTTGATGAACTGCGAGAACTGGGAGCGATGGTACTGAGAATTTAGGTTTGATTTGGGATGAAATTGGATGTGATTTCGTCTCAGTGTTGTGAATTATACGTAATTGAAATTTAAGTAGGAAATATTTGTTAGGATAGTTGTTCCTTATTAGACCAGCACGACTCTCCCATAGTGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGTTTCCTCAAAAGGCCTCACACCAATGGAGAGTGTATTATTTGATTATAAACCCATGACCATTCTCTAAATTAACTGACGTGGGACACTTTCATCTAAAAGTCCTTTAAAAGTTCCTTGAGCTTTGCTGATACAGTTTTCTGGCCTGAGTGTTGCTCTGTATGGTTCCTCTTTAAGCGTTCATGTGTTTTTATCTTAAAGATTGATGATCTTCCTCACTCGTTTGAAGGGTAGAATTCTTTTTCAGATGGTGAAATTGGGAAATCTTGTCTGGAAATTCCCGCTGAATTTGTTATCCCCATTGAGTAGCATAAGCCAGCTTGTTACCGTGCTATCTATTTCTCTGCGTTTTACGATGTTTTCTAAGCCATTTTCAACCTCTTATTTGAGATTCAAATCCTTGCAGTATGGTTTGATTTTATCCTGTAAAACATTTTTGACCAATTAGTTGACTTATGAAGGCTTCAGATTTCTTGATTTCATCCAGATGGAAAGATATGTTAGGCAAGGCACTACATGCTGTTGATGTTGTCACCTTTGACTATCCGTGTGAGTACTTACCATTTAACAATACATTGATATAGATATAGGACCATATACCTTTTGCAGTGTTACTAGGCATTGGAACATGATGAACTTCAAATTTGGCTGTCTCTTTCAATTAACTTTTAAAATTTTGAGTTGACTTGACAGACATTTCTGGTGGTAGGAAGCCTCCTCCCAAGGCTGAAAAATTGGTTCCATACCATGTCGAAATTGTCAAAAGGACAATTGCAAAGTACCCTGGGCACCCTTTGATTTTGGCTGGTAAATCTATGGGTTCGAGGTAATAATTTTGTTTCTTTGCTTGAAATTATCCGTTTGGAGTTCTGCTTAGCGTCTTCATAAGTATGAAATTTTCAAATATTTCCGAAGCATATTGTCATTGGTGGGCTATAAATGGAATAAACTTCTCCTCAAGTGATCTTTTTTTAACAAGATTTAAAAAAAAATAATGTTCACAGATAGCCTATGCAAATGAATGAAAATATTTGAGGTGATTTTTAGGACCGATTCATTTTTTGCTTATTCTGACTTTTTTGAATAATTCGAGGCTTTTTATTTATTTATTTATTTTTATTTTTATAAAACCATGAACATTCAACTTCATAGATGATAGTCACAATAAAACTTCATAATTTGAGATTTTCTGTTGGGTAAATATGGTTTTTACTTATTTCATTATTTGCAGAGTAAGTTGCATGGTAGCTTGTGAGGAAGACATTCATGCTTCTGCAATAATTTGCTTGGGGTATCCCTTGAAGGTATGAGACTATTTATGCATATCAGATTGAAAAATCCTTCAGGCTTTAGGGTAAATAAACATCTCTTGTTATGGTTTCTTTTGCAAGTTGTAGATGGCTATTTATCAAGTATATACACTGTCAGTTATGGTCATACCAAACTTGGGACAACCTTACCTTTTTCATAAGAAACTTGAATTTGTAAATAAACTTGACCTTTTAGTTCAGATATGCAATAAGTGAGTGATAGATGACTAGTATATGTTGGATATGTTCTCATACCTCAAATTAAGTGTTATCAAACTTTATGGGTTTGAAAAACCTCTGCGGGTAGGAATGACAATGAAGGTGACATTTTCCATTGTACAATGGAAGCTTATAGCTTCTGCCAATTAATCAAGATAAAGTTGCATGTTTTTAGGGCTTGAAAGGGGATGTCCGAGACCAGACGCTACTGCAAGTTACCATTCCTATCATGTTTGTACAGGTACATCCTCTTTACAACGTCAACAACTAAACAATATAAGTTGCAATATTCTCCTCTAGAAGAACTTGAGCATCGCTCAAGTGGTTAACACATGTATCTTCTATTAGTCAGTCGTTGGAATTCCCCCCGGGGCCCACATCTTTTTTAACACAAATTATTCTCTTTTGAAAGATATGAAGCATAACCCACACCTTCTATGGCAAAGTAATAACATATCGGTAGATCTACTCTGGTTTCATGAGGGAACGTTATGATTTATGGGCCACCTTGAGTGGGATACAAGTTTGCTTTTTCACACCTATTAATGATAGAATGTTAAGGGATCATAGACATTCATAGACACTTGAGAGATTCGATCGAAGTTCAATCACATCGTTGTGCAGTCTTTAACATCATAATTTTGCCATTCAGGGTAGCAGGGATGCTCTGTGTCCTTTAGAGAAGCTGGAGGATATTCGGAAGAGGATGAAATCAATTAGTGGGTTACATGTGATTGATGGTGGTGACCACTCTTTCCATATCTCAAAGAAGTACCTTCAAGGCAAGGGTTCGAGTAAAGATGAAGCCGAAAATGTAGCTGCTCAGGCACTTGCTACTTTTGTCTCTGGAGGTCTTAGATAGCTCTAGCTAAGCTTTTTTGGCTGTACAAAATTGTGTTTTTAGACGTTACTTTGTAATATAAAACGGTCGTAATGTCAAGCACATAATTTTGTCATCTGACATTATGTATCTCGTTTTATTGCGTATCAGATTTATGTTCATATATATATATATATTATAGCAAGC

mRNA sequence

AAATTTTATTTAAAAATGCGTTTCTTTGCCGATCTCTGATTCTCTGGTTACTGCTCTCTCTCTCTCTCTCTAACCATTTCCATTAATTATCTTCTCCATTTCGCACCATTCTTGGATTCTTCTTCGTGTCCTAACTCCCAGATCTACTCCCCCTTCTTCCCATCTTCTTCTTCTTCTTTAAAATCTTACTTAAATCCCTCAAAAAGCGTTTCTCCACTCTTTTCTCTTTGTTCTCTTTCCCATTTCTCCACCATGTTGCCGTTTTTCCTCTTCATTTTCATCTGCTTCGATGCTCTTTTGTCCCCTCCTCTTGCCGCCGGCGAGCTCACTACCTGCTCCGGGATAGTTCCCATGAAGTACCGGAGCGACAAGATTTCCATTGCCGACTTTGGGGGTGTCGGCGATGGCCATACATTGAACACTAGAGCATTTCGAGCTGCGATCTATCGAATTCAGCATTTGAGAAGAAGAGGGGGTACTTTGCTTTACATTCCTCCTGGGGTTTACTTGACGGAGAGCTTTAATCTCACTAGCCATATGACTCTGTATCTTGCAAAAGACGCTGTTATCAAAGCTGTTCAGGATTCTTCAAATTGGCCAGTGATCGAGCCGTTGCCATCATATGGAAGAGGAAGGGAGCGCCCTGGTGGAAGATATGTAAGCTTTATTCATGGAGATGGTGTTCATGATGTGGTGATCACTGGTGAGAATGGGACCATTGATGGCCAAGGTGATGTCTGGTGGAATATGTGGAGGACAAGGACTCTGATGTACACTAGGCCTAATCTTGTTGAATTTATCAATTCTCATAATATCATCATCTCCAACGTAATGTTCCTGAACTCCCCGTTTTGGAACATTCATCCAGTTTACTGCAGTAACGTTGTTGTCAGATATGTCACAATATTGGCTCCTCGTGATTCCCCGAACACCGATGGAATCGATCCAGTAACAAAACTTGTCAAACTGATGAACTCAGATTCAAGCAACAACGTCTGTATAGAAGATTCCTACATTTCAACTGGAGATGATCTTGTGGCTGTGAAGAGCGGATGGGACGAATATGGTATCGCTTACGGTCGTAGTAGTTACGACATTACCATCCGAAGAATATCAGGGTCAAGTCCATTTGCTGGAGTTGCTGTAGGAAGCGAAACCTCCGGTGGTGTGTCAAATGTATTTGCAGAACACCTAAGCTTATACGACATGGGAGTTGGTATCAACATCAAGACAAACATTGGAAGAGGGGGGTTCATAAAGAACATAACCATATCGGATGTCTACATGGAGAGTTCGCGAAAGGGTCTAAAGATTGCGAGCGATACCGGAGATCATCCTGACGACAAGTTTGACCCGAACGCTCTTCCAATCGTCAAAGACATCACAATTAAAAACGTTTGGGGTGTGAATGTGCAGCAAGCAGGTTCTATATATGGCTTGAGGAACTCCCCATTTACTGGTATATGTCTTTCGAACATTAACCTTCGTGGCACAGCGAGACCGAGATCAGTACCGTGGACTTGCTCGTATGTAAGTGGGGCAGCTCTCTTGGTTAGTCCATGGCCATGCTCAGAGCTTACCAGCACACAGCAGGATGATCCATCTGAAAGCCCAATAAATAGACCTCATTTGGGCCTCAATGGGCCGCACGCCATAGGAGTGAAACTTTTGAACAACGGCCACTCCTTGTCGTTCCAAGTGCTGCTCTCTCAGTTTGGCGCCGAACAATGGCTTCTTCACCTCCTTCAAAACGCCGGCGTAAAAACCTCGCCATTGATGACGCCTTTGAGACCTTACTTGCAACGTCTTCCTCGGGCATTTCTCTTTTCTTTTTCTTCGTCGTTCTTTTTTGTTCGTCTTTCCATTTTCCGATTGCCTCCGTCGATTTCTTTCTCGTACTCGCTCTTTTTGGAGTTGTTTGTAGTTGATGAACTGCGAGAACTGGGAGCGATGGCTTCAGATTTCTTGATTTCATCCAGATGGAAAGATATGTTAGGCAAGGCACTACATGCTGTTGATGTTGTCACCTTTGACTATCCGTACATTTCTGGTGGTAGGAAGCCTCCTCCCAAGGCTGAAAAATTGGTTCCATACCATGTCGAAATTGTCAAAAGGACAATTGCAAAGTACCCTGGGCACCCTTTGATTTTGGCTGGTAAATCTATGGGTTCGAGAGTAAGTTGCATGGTAGCTTGTGAGGAAGACATTCATGCTTCTGCAATAATTTGCTTGGGGTATCCCTTGAAGGGCTTGAAAGGGGATGTCCGAGACCAGACGCTACTGCAAGTTACCATTCCTATCATGTTTGTACAGGGTAGCAGGGATGCTCTGTGTCCTTTAGAGAAGCTGGAGGATATTCGGAAGAGGATGAAATCAATTAGTGGGTTACATGTGATTGATGGTGGTGACCACTCTTTCCATATCTCAAAGAAGTACCTTCAAGGCAAGGGTTCGAGTAAAGATGAAGCCGAAAATGTAGCTGCTCAGGCACTTGCTACTTTTGTCTCTGGAGGTCTTAGATAGCTCTAGCTAAGCTTTTTTGGCTGTACAAAATTGTGTTTTTAGACGTTACTTTGTAATATAAAACGGTCGTAATGTCAAGCACATAATTTTGTCATCTGACATTATGTATCTCGTTTTATTGCGTATCAGATTTATGTTCATATATATATATATATTATAGCAAGC

Coding sequence (CDS)

ATGTTGCCGTTTTTCCTCTTCATTTTCATCTGCTTCGATGCTCTTTTGTCCCCTCCTCTTGCCGCCGGCGAGCTCACTACCTGCTCCGGGATAGTTCCCATGAAGTACCGGAGCGACAAGATTTCCATTGCCGACTTTGGGGGTGTCGGCGATGGCCATACATTGAACACTAGAGCATTTCGAGCTGCGATCTATCGAATTCAGCATTTGAGAAGAAGAGGGGGTACTTTGCTTTACATTCCTCCTGGGGTTTACTTGACGGAGAGCTTTAATCTCACTAGCCATATGACTCTGTATCTTGCAAAAGACGCTGTTATCAAAGCTGTTCAGGATTCTTCAAATTGGCCAGTGATCGAGCCGTTGCCATCATATGGAAGAGGAAGGGAGCGCCCTGGTGGAAGATATGTAAGCTTTATTCATGGAGATGGTGTTCATGATGTGGTGATCACTGGTGAGAATGGGACCATTGATGGCCAAGGTGATGTCTGGTGGAATATGTGGAGGACAAGGACTCTGATGTACACTAGGCCTAATCTTGTTGAATTTATCAATTCTCATAATATCATCATCTCCAACGTAATGTTCCTGAACTCCCCGTTTTGGAACATTCATCCAGTTTACTGCAGTAACGTTGTTGTCAGATATGTCACAATATTGGCTCCTCGTGATTCCCCGAACACCGATGGAATCGATCCAGTAACAAAACTTGTCAAACTGATGAACTCAGATTCAAGCAACAACGTCTGTATAGAAGATTCCTACATTTCAACTGGAGATGATCTTGTGGCTGTGAAGAGCGGATGGGACGAATATGGTATCGCTTACGGTCGTAGTAGTTACGACATTACCATCCGAAGAATATCAGGGTCAAGTCCATTTGCTGGAGTTGCTGTAGGAAGCGAAACCTCCGGTGGTGTGTCAAATGTATTTGCAGAACACCTAAGCTTATACGACATGGGAGTTGGTATCAACATCAAGACAAACATTGGAAGAGGGGGGTTCATAAAGAACATAACCATATCGGATGTCTACATGGAGAGTTCGCGAAAGGGTCTAAAGATTGCGAGCGATACCGGAGATCATCCTGACGACAAGTTTGACCCGAACGCTCTTCCAATCGTCAAAGACATCACAATTAAAAACGTTTGGGGTGTGAATGTGCAGCAAGCAGGTTCTATATATGGCTTGAGGAACTCCCCATTTACTGGTATATGTCTTTCGAACATTAACCTTCGTGGCACAGCGAGACCGAGATCAGTACCGTGGACTTGCTCGTATGTAAGTGGGGCAGCTCTCTTGGTTAGTCCATGGCCATGCTCAGAGCTTACCAGCACACAGCAGGATGATCCATCTGAAAGCCCAATAAATAGACCTCATTTGGGCCTCAATGGGCCGCACGCCATAGGAGTGAAACTTTTGAACAACGGCCACTCCTTGTCGTTCCAAGTGCTGCTCTCTCAGTTTGGCGCCGAACAATGGCTTCTTCACCTCCTTCAAAACGCCGGCGTAAAAACCTCGCCATTGATGACGCCTTTGAGACCTTACTTGCAACGTCTTCCTCGGGCATTTCTCTTTTCTTTTTCTTCGTCGTTCTTTTTTGTTCGTCTTTCCATTTTCCGATTGCCTCCGTCGATTTCTTTCTCGTACTCGCTCTTTTTGGAGTTGTTTGTAGTTGATGAACTGCGAGAACTGGGAGCGATGGCTTCAGATTTCTTGATTTCATCCAGATGGAAAGATATGTTAGGCAAGGCACTACATGCTGTTGATGTTGTCACCTTTGACTATCCGTACATTTCTGGTGGTAGGAAGCCTCCTCCCAAGGCTGAAAAATTGGTTCCATACCATGTCGAAATTGTCAAAAGGACAATTGCAAAGTACCCTGGGCACCCTTTGATTTTGGCTGGTAAATCTATGGGTTCGAGAGTAAGTTGCATGGTAGCTTGTGAGGAAGACATTCATGCTTCTGCAATAATTTGCTTGGGGTATCCCTTGAAGGGCTTGAAAGGGGATGTCCGAGACCAGACGCTACTGCAAGTTACCATTCCTATCATGTTTGTACAGGGTAGCAGGGATGCTCTGTGTCCTTTAGAGAAGCTGGAGGATATTCGGAAGAGGATGAAATCAATTAGTGGGTTACATGTGATTGATGGTGGTGACCACTCTTTCCATATCTCAAAGAAGTACCTTCAAGGCAAGGGTTCGAGTAAAGATGAAGCCGAAAATGTAGCTGCTCAGGCACTTGCTACTTTTGTCTCTGGAGGTCTTAGATAG

Protein sequence

MLPFFLFIFICFDALLSPPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGHTLNTRAFRAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEPLPSYGRGRERPGGRYVSFIHGDGVHDVVITGENGTIDGQGDVWWNMWRTRTLMYTRPNLVEFINSHNIIISNVMFLNSPFWNIHPVYCSNVVVRYVTILAPRDSPNTDGIDPVTKLVKLMNSDSSNNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRSSYDITIRRISGSSPFAGVAVGSETSGGVSNVFAEHLSLYDMGVGINIKTNIGRGGFIKNITISDVYMESSRKGLKIASDTGDHPDDKFDPNALPIVKDITIKNVWGVNVQQAGSIYGLRNSPFTGICLSNINLRGTARPRSVPWTCSYVSGAALLVSPWPCSELTSTQQDDPSESPINRPHLGLNGPHAIGVKLLNNGHSLSFQVLLSQFGAEQWLLHLLQNAGVKTSPLMTPLRPYLQRLPRAFLFSFSSSFFFVRLSIFRLPPSISFSYSLFLELFVVDELRELGAMASDFLISSRWKDMLGKALHAVDVVTFDYPYISGGRKPPPKAEKLVPYHVEIVKRTIAKYPGHPLILAGKSMGSRVSCMVACEEDIHASAIICLGYPLKGLKGDVRDQTLLQVTIPIMFVQGSRDALCPLEKLEDIRKRMKSISGLHVIDGGDHSFHISKKYLQGKGSSKDEAENVAAQALATFVSGGLR

Homology

[Close]

BLAST of CmaCh02G009060 vs. ExPASy Swiss-Prot
Match: A7PZL3 (Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 408.7 bits (1049), Expect = 1.5e-112
Identity = 200/407 (49.14%), Postives = 271/407 (66.58%), Query Frame = 0


Query: 37  RSDKISIADFGGVGDGHTLNTRAFRAAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHM 96
           R+   S+ DFGGVGDG TLNT+AF+ A+  +      GG  LY+P G +LT SF+LTSH 
Sbjct: 59  RAHSASLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHF 118

Query: 97  TLYLAKDAVIKAVQDSSNWPVIEPLPSYGRGRERPGGRYVSFIHGDGVHDVVITGENGTI 156
           TL+L +DAV+ A QD S WPVI+PLPSYGRGR+   GRY S I G  + DV+ITG+NGTI
Sbjct: 119 TLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTI 178

Query: 157 DGQGDVWWNMWRTRTLMYTRPNLVEFINSHNIIISNVMFLNSPFWNIHPVYCSNVVVRYV 216
           DGQG +WW  +    L YTRP L+E + S +I ISN+  LNSP WN+HPVY  N++++ +
Sbjct: 179 DGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGI 238

Query: 217 TILAPRDSPNTDGIDPVTKLVKLMNSDSSNNVCIEDSYISTGDDLVAVKSGWDEYGIAYG 276
           TILAP  SPNTDGI+P          DS  N  IED YI +GDD VAVKSGWDEYGIAYG
Sbjct: 239 TILAPVRSPNTDGINP----------DSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYG 298

Query: 277 RSSYDITIRRISGSSPFAGV-AVGSETSGGVSNVFAEHLSLYDMGVGINIKTNIGRGGFI 336
             +  + IRR++  SP++ V A+GSE SGG+ +V AE +   +   GI IKT IGRGG++
Sbjct: 299 MPTKQLVIRRLTCISPYSAVIALGSEMSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYV 358

Query: 337 KNITISDVYMESSRKGLKIASDTGDHPDDKFDPNALPIVKDITIKNVWGVNVQQAGSIYG 396
           K+I +  + M++ +    +  + G H D+ +DP A P+++ I  +++   NV  A  + G
Sbjct: 359 KDIYVRGMTMKTMKWAFWMTGNYGSHADNHYDPKAFPVIQGINYRDMVAENVSMAARLEG 418

Query: 397 LRNSPFTGICLSNINLRGTARPRSVPWTCSYVSGAALLVSPWPCSEL 443
           + + PFTGIC+SN+ +   A+ + VPWTC+ V G +  V+P PCS L
Sbjct: 419 IPSDPFTGICISNVTIHLAAKAKKVPWTCTDVEGISSGVTPTPCSTL 455

[Close]

BLAST of CmaCh02G009060 vs. ExPASy Swiss-Prot
Match: Q8RY29 (Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 126.7 bits (317), Expect = 1.1e-27
Identity = 106/385 (27.53%), Postives = 177/385 (45.97%), Query Frame = 0


Query: 41  ISIADFGGVGDGHTLNTRAFRAAIYRIQHLRRRGGTLLYIPPG-VYLTESFNLTSHMTLY 100
           +S++DFG  GDG T +T+AF  A  +       G   L +P G  YL +S  LT      
Sbjct: 68  VSVSDFGAKGDGKTDDTQAFVNAWKKA--CSSNGAVNLLVPKGNTYLLKSIQLTGPCNSI 127

Query: 101 LAKD--AVIKAVQDSSNWPVIEPLPSYGRGRERPGGRYVSFIHGDGVHDVVIT-GENGTI 160
           L       + A Q  S++  I               +++ F   DGV+++ +  G+ G +
Sbjct: 128 LTVQIFGTLSASQKRSDYKDI--------------SKWIMF---DGVNNLSVDGGDTGVV 187

Query: 161 DGQGDVWW--NMWRTRTLMYTR-PNLVEFINSHNIIISNVMFLNSPFWNIHPVYCSNVVV 220
           DG G+ WW  +  R +    T+ P  + F NS ++I+ N+   N+    I    CSNV V
Sbjct: 188 DGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQV 247

Query: 221 RYVTILAPRDSPNTDGIDPVTKLVKLMNSDSSNNVCIEDSYISTGDDLVAVKSGWDEYGI 280
             V + AP DSPNTDGI          +  ++ N+ + +S I TGDD ++++SG      
Sbjct: 248 SNVVVTAPADSPNTDGI----------HITNTQNIRVSESIIGTGDDCISIESG------ 307

Query: 281 AYGRSSYDITIRRISGSSPFAGVAVGS----ETSGGVSNVFAEHLSLYDMGVGINIKTNI 340
                S ++ I  I+   P  G+++GS     +   VS V  +   L     G+ IKT  
Sbjct: 308 -----SQNVQINDIT-CGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQ 367

Query: 341 GRGGFIKNITISDVYMESSRKGLKIASDTGDHPDDKFDPNALPIVKDITIKNVWGVNVQQ 400
           G  G   NI   ++ M++ +  + I  D  D      + +A+  VK++  +++ G +  +
Sbjct: 368 GGSGTASNIIFQNIQMDNVKNPIIIDQDYCDKSKCTTEKSAVQ-VKNVVYRDISGTSASE 410

Query: 401 AGSIYGL-RNSPFTGICLSNINLRG 414
               +   +N P  GI L  +N++G
Sbjct: 428 NAITFNCSKNYPCQGIVLDRVNIKG 410

[Close]

BLAST of CmaCh02G009060 vs. ExPASy Swiss-Prot
Match: Q7M1E7 (Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.0e-17
Identity = 80/273 (29.30%), Postives = 122/273 (44.69%), Query Frame = 0


Query: 154 GTIDGQGDVWW----NMWRTRTLM--YTRPNLVEFINSHNIIISNVMFLNSPFWNIHPVY 213
           G IDGQG  WW     +   RT+     RP  ++   S ++ +  +  +NSP +++    
Sbjct: 154 GVIDGQGQQWWAGQCKVVNGRTVCNDRNRPTAIKIDYSKSVTVKELTLMNSPEFHLVFGE 213

Query: 214 CSNVVVRYVTILAPRDSPNTDGIDPVTKLVKLMNSDSSNNVCIEDSYISTGDDLVAVKSG 273
           C  V ++ + I APRDSPNTDGID            +S    IE   I TGDD +A+   
Sbjct: 214 CEGVKIQGLKIKAPRDSPNTDGIDIF----------ASKRFHIEKCVIGTGDDCIAI--- 273

Query: 274 WDEYGIAYGRSSYDITIRRISGSSPFAGVAVGS----ETSGGVSNVFAEHLSLYDMGVGI 333
                   G  S +ITI+ +    P  G+++GS     +   VS+V        D   G+
Sbjct: 274 --------GTGSSNITIKDLI-CGPGHGISIGSLGRDNSRAEVSHVHVNRAKFIDTQNGL 333

Query: 334 NIKTNIGRGGFIKNITISDVYMESSRKGLKIASDTGDHPDDKFDPNALPIVKDITIKNVW 393
            IKT  G  G    IT  +V M +S   + I            +  +   ++ +T KN+ 
Sbjct: 334 RIKTWQGGSGLASYITYENVEMINSENPILINQFYCTSASACQNQRSAVQIQGVTYKNIH 393

Query: 394 GVNVQQAGSIYGLRNS-PFTGICLSNINLRGTA 416
           G +   A       +S P TGI LSN++L+ T+
Sbjct: 394 GTSATAAAIQLMCSDSVPCTGIQLSNVSLKLTS 404

[Close]

BLAST of CmaCh02G009060 vs. ExPASy Swiss-Prot
Match: P43212 (Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-16
Identity = 107/396 (27.02%), Postives = 162/396 (40.91%), Query Frame = 0


Query: 37  RSDKISIAD---FGGVGDGHTLNTRAFRAAIYRIQHLRRRGGTLLYIPPG---VYLTESF 96
           R D I+I +   +G VGDG    T AF  A    Q   ++   +L +P     V     F
Sbjct: 52  RHDAINIFNVEKYGAVGDGKHDCTEAFSTA---WQAACKKPSAMLLVPGNKKFVVNNLFF 111

Query: 97  NLTSHMTLYLAKDAVIKAVQDSSNWPVIEPLPSYGRGRERPGGRYVSFIHGDGVHDVVIT 156
           N           D +I A Q+ ++W              +    ++ F    G     + 
Sbjct: 112 NGPCQPHFTFKVDGIIAAYQNPASW--------------KNNRIWLQFAKLTG---FTLM 171

Query: 157 GENGTIDGQGDVWWN---MW---RTRTLMYTRPNLVEFINSHNIIISNVMFLNSPFWNIH 216
           G+ G IDGQG  WW     W   R       RP  ++F  S  +II  +  +NSP +++ 
Sbjct: 172 GK-GVIDGQGKQWWAGQCKWVNGREICNDRDRPTAIKFDFSTGLIIQGLKLMNSPEFHLV 231

Query: 217 PVYCSNVVVRYVTILAPRDSPNTDGIDPVTKLVKLMNSDSSNNVCIEDSYISTGDDLVAV 276
              C  V +  ++I APRDSPNTDGID            +S N  ++ + I TGDD VA+
Sbjct: 232 FGNCEGVKIIGISITAPRDSPNTDGIDIF----------ASKNFHLQKNTIGTGDDCVAI 291

Query: 277 KSGWDEYGIAYGRSSYDITIRRISGSSPFAGVAVGS----ETSGGVSNVFAEHLSLYDMG 336
                      G  S +I I  +    P  G+++GS     +   VS V        D  
Sbjct: 292 -----------GTGSSNIVIEDLI-CGPGHGISIGSLGRENSRAEVSYVHVNGAKFIDTQ 351

Query: 337 VGINIKTNIGRGGFIKNITISDVYMESSRKGLKIASDTGDHPDDKFDPNALPIVKDITIK 396
            G+ IKT  G  G   +I   +V M +S   + I            +  +   ++D+T K
Sbjct: 352 NGLRIKTWQGGSGMASHIIYENVEMINSENPILINQFYCTSASACQNQRSAVQIQDVTYK 404

Query: 397 NVWGVNVQQAGSIYGLRNS-PFTGICLSNINLRGTA 416
           N+ G +   A       +S P   I LS+I+L+ T+
Sbjct: 412 NIRGTSATAAAIQLKCSDSMPCKDIKLSDISLKLTS 404

[Close]

BLAST of CmaCh02G009060 vs. ExPASy Swiss-Prot
Match: Q9FY19 (Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.7e-16
Identity = 81/273 (29.67%), Postives = 122/273 (44.69%), Query Frame = 0


Query: 154 GTIDGQGDVWWN------MWRTRTLMYTRPNLVEFINSHNIIISNVMFLNSPFWNIHPVY 213
           G IDGQG+ WW+        RT      RP  ++   S ++ +  +   NSP +++    
Sbjct: 155 GVIDGQGNRWWSDQCKTINGRTVCNDKGRPTAIKIDFSKSVTVKELTLTNSPEFHLVFGE 214

Query: 214 CSNVVVRYVTILAPRDSPNTDGIDPVTKLVKLMNSDSSNNVCIEDSYISTGDDLVAVKSG 273
           C  V ++ + I APRDSPNTDGID            +S    IE   I TGDD VAV   
Sbjct: 215 CDGVKIQGIKIKAPRDSPNTDGIDIF----------ASKRFEIEKCTIGTGDDCVAV--- 274

Query: 274 WDEYGIAYGRSSYDITIRRISGSSPFAGVAVGSETSGG----VSNVFAEHLSLYDMGVGI 333
                   G  S +ITI+ ++   P  G+++GS   G     VS V  +     D   G+
Sbjct: 275 --------GTGSSNITIKDLT-CGPGHGMSIGSLGKGNSRSEVSFVHLDGAKFIDTQNGL 334

Query: 334 NIKTNIGRGGFIKNITISDVYMESSRKGLKIASDTGDHPDDKFDPNALPIVKDITIKNVW 393
            IKT  G  G   +IT  +V M ++   + I            +  +   ++D+T KN+ 
Sbjct: 335 RIKTWQGGSGLASHITYENVEMINAENPILINQFYCTSAAACKNQRSAVKIQDVTFKNIH 394

Query: 394 GVNVQQAGSIYGLRNS-PFTGICLSNINLRGTA 416
           G +   A       +S P + I LSN+ L+ T+
Sbjct: 395 GTSATTAAIQLMCSDSVPCSNIKLSNVFLKLTS 405

[Close]

BLAST of CmaCh02G009060 vs. TAIR 10
Match: AT4G23820.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 676.4 bits (1744), Expect = 2.7e-194
Identity = 323/440 (73.41%), Postives = 374/440 (85.00%), Query Frame = 0


Query: 6   LFIFICFDALLSPPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGHTLNTRAFRAAIY 65
           +F+F C    +S         TCSGIVP++YR DKISI DFGGVGDG T+NT+AFRAAIY
Sbjct: 8   IFLFSCL--FVSSSSLGDSEATCSGIVPLRYRYDKISITDFGGVGDGRTVNTKAFRAAIY 67

Query: 66  RIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEPLPSYG 125
           RIQHL+RRGGTLLYIPPGVYLTESFNLTSHMTLYLAK AVI+AVQD+ NWP+I+PLPSYG
Sbjct: 68  RIQHLKRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKGAVIRAVQDTWNWPLIDPLPSYG 127

Query: 126 RGRERPGGRYVSFIHGDGVHDVVITGENGTIDGQGDVWWNMWRTRTLMYTRPNLVEFINS 185
           RGRE PGGRY+SFIHGDG+ DVVITG+NGTIDGQG+VWWNMWR+RTL YTRPNL+EF +S
Sbjct: 128 RGRELPGGRYMSFIHGDGLRDVVITGQNGTIDGQGEVWWNMWRSRTLKYTRPNLIEFKDS 187

Query: 186 HNIIISNVMFLNSPFWNIHPVYCSNVVVRYVTILAPRDSPNTDGIDPVTKLVKLMNSDSS 245
             IIISNV+F NSPFWNIHPVYCSNVV+ +VTILAP+DSPNTDGIDP          DSS
Sbjct: 188 KEIIISNVIFQNSPFWNIHPVYCSNVVIHHVTILAPQDSPNTDGIDP----------DSS 247

Query: 246 NNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRSSYDITIRRISGSSPFAGVAVGSETSGG 305
            NVCIEDSYISTGDDLVA+KSGWD+YGIAYGR S +ITIRRI+GSSPFAG+A+GSETSGG
Sbjct: 248 YNVCIEDSYISTGDDLVAIKSGWDQYGIAYGRPSSNITIRRITGSSPFAGIAIGSETSGG 307

Query: 306 VSNVFAEHLSLYDMGVGINIKTNIGRGGFIKNITISDVYMESSRKGLKIASDTGDHPDDK 365
           + N+ AEH++L +MGVG+NIKTNIGRGG+IKNI ISDVY+++++ G+KIA DTGDHPD+ 
Sbjct: 308 IKNIIAEHITLSNMGVGVNIKTNIGRGGYIKNIKISDVYVDTAKYGIKIAGDTGDHPDEN 367

Query: 366 FDPNALPIVKDITIKNVWGVNVQQAGSIYGLRNSPFTGICLSNINLRGTARPRSVPWTCS 425
           ++PNALP+VK I IKNVWGVNV+ AGSI GL+ SPFTGICLS INL G+       W CS
Sbjct: 368 YNPNALPVVKGIHIKNVWGVNVRNAGSIQGLKGSPFTGICLSEINLHGSLNSYKT-WKCS 427

Query: 426 YVSGAALLVSPWPCSELTST 446
            VSG +L VSPWPCSEL +T
Sbjct: 428 DVSGTSLKVSPWPCSELRTT 434

[Close]

BLAST of CmaCh02G009060 vs. TAIR 10
Match: AT5G41870.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 600.1 bits (1546), Expect = 2.4e-171
Identity = 294/450 (65.33%), Postives = 353/450 (78.44%), Query Frame = 0


Query: 3   PFFLFIFICFDALLSPPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGHTLNTRAFRA 62
           P  +F+      +L   L+ G   TCSGIVPMK+R++ +SI+DFG VGDG TLNT+AF +
Sbjct: 7   PISVFVLFLLSTVLPHHLSLGAPITCSGIVPMKHRNEMLSISDFGAVGDGKTLNTKAFNS 66

Query: 63  AIYRIQHLRRRG-GTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEPL 122
           AI RI++      GTLLY+P GVYLT+SFNLTSHMTLYLA  AVIKAVQD+  WP+ +PL
Sbjct: 67  AIDRIRNSNNSNEGTLLYVPRGVYLTQSFNLTSHMTLYLADGAVIKAVQDTEKWPLTDPL 126

Query: 123 PSYGRGRERPGGRYVSFIHGDGVHDVVITGENGTIDGQGDVWWNMWRTRTLMYTRPNLVE 182
           PSYGRGRE PG RY+SFIHGDG++DVVITG NGTIDGQG+ WWNMWR  TL +TRP L+E
Sbjct: 127 PSYGRGREHPGRRYISFIHGDGLNDVVITGRNGTIDGQGEPWWNMWRHGTLKFTRPGLIE 186

Query: 183 FINSHNIIISNVMFLNSPFWNIHPVYCSNVVVRYVTILAPRDSPNTDGIDPVTKLVKLMN 242
           F NS NI++S+V+  NSPFW +HPVYCSNVVV +VTILAP DS NTDGIDP         
Sbjct: 187 FNNSTNILVSHVVLQNSPFWTLHPVYCSNVVVHHVTILAPTDSYNTDGIDP--------- 246

Query: 243 SDSSNNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRSSYDITIRRISGSSPFAGVAVGSE 302
            DSS+NVCIEDSYISTGDDLVAVKSGWDEYGIAY R S DITIRRI+GSSPFAG+A+GSE
Sbjct: 247 -DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYNRPSRDITIRRITGSSPFAGIAIGSE 306

Query: 303 TSGGVSNVFAEHLSLYDMGVGINIKTNIGRGGFIKNITISDVYMESSRKGLKIASDTGDH 362
           TSGG+ NV  E+++LY+ G+GI+IKTNIGRGG I+ ITIS VY+E  R G+KI+ DTGDH
Sbjct: 307 TSGGIQNVTVENITLYNSGIGIHIKTNIGRGGSIQGITISGVYLEKVRTGIKISGDTGDH 366

Query: 363 PDDKFDPNALPIVKDITIKNVWGVNVQQAGSIYGLRNSPFTGICLSNINLRGTARPRSVP 422
           PDDKF+ +ALPIV+ ITIKNVWG+ V++AG + GL++SPFT +C SN+ L GT   RS  
Sbjct: 367 PDDKFNTSALPIVRGITIKNVWGIKVERAGMVQGLKDSPFTNLCFSNVTLTGT--KRSPI 426

Query: 423 WTCSYVSGAALLVSPWPCSELTSTQQDDPS 452
           W CS V GAA  V+P PC EL++T Q   S
Sbjct: 427 WKCSDVVGAADKVNPTPCPELSATTQQGGS 444

[Close]

BLAST of CmaCh02G009060 vs. TAIR 10
Match: AT4G33440.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 448.0 bits (1151), Expect = 1.5e-125
Identity = 223/419 (53.22%), Postives = 289/419 (68.97%), Query Frame = 0


Query: 27  TCSGIVPMKYRSDKI--SIADFGGVGDGHTLNTRAFRAAIYRIQHLRRRGGTLLYIPPGV 86
           TCSG        ++I  SI DFGGVGDG T NT AFR A+  ++     GG  L +P G 
Sbjct: 56  TCSGFFNHDPFPNRIVMSITDFGGVGDGKTSNTAAFRRAVRHLEGFAAEGGAQLNVPEGT 115

Query: 87  YLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEPLPSYGRGRERPGGRYVSFIHGDGV 146
           +L+ SFNLTS+ TL+L + A+I   +D   WP+IEPLPSYGRGRERPGGR++S IHGD +
Sbjct: 116 WLSGSFNLTSNFTLFLERGALILGSKDLDEWPIIEPLPSYGRGRERPGGRHISLIHGDNL 175

Query: 147 HDVVITGENGTIDGQGDVWWNMWRTRTLMYTRPNLVEFINSHNIIISNVMFLNSPFWNIH 206
            +VVITGENGTIDGQG +WW +W  RTL++TR +L+E  NSHNI+ISN+  LNSPFW IH
Sbjct: 176 TNVVITGENGTIDGQGKMWWELWWNRTLVHTRGHLIELKNSHNILISNLTLLNSPFWTIH 235

Query: 207 PVYCSNVVVRYVTILAPRDSPNTDGIDPVTKLVKLMNSDSSNNVCIEDSYISTGDDLVAV 266
           PVYCSNVV+R +TILAP ++PNTDGIDP          DSS NVCIED YI +GDDLVAV
Sbjct: 236 PVYCSNVVIRNMTILAPMNAPNTDGIDP----------DSSTNVCIEDCYIESGDDLVAV 295

Query: 267 KSGWDEYGIAYGRSSYDITIRRISGSS-PFAGVAVGSETSGGVSNVFAEHLSLYDMGVGI 326
           KSGWD+YG+A  R S +I IRRISG++   +GV +GSE SGG+ N+  E + ++D   G+
Sbjct: 296 KSGWDQYGMAVARPSSNIVIRRISGTTRTCSGVGIGSEMSGGIFNITVEDIHVWDSAAGL 355

Query: 327 NIKTNIGRGGFIKNITISDVYMESSRKGLKIASDTGDHPDDKFDPNALPIVKDITIKNVW 386
            IKT+ GRGG+I NIT ++V +E  +  ++ +S + DH DDK+DP ALP VK I I NV 
Sbjct: 356 RIKTDKGRGGYISNITFNNVLLEKVKVPIRFSSGSNDHSDDKWDPKALPRVKGIYISNVV 415

Query: 387 GVNVQQAGSIYGLRNSPFTGICLSNINLRGTARPRSVPWTCSYVSGAALLVSPWPCSEL 443
            +N ++A  + G+  + F  +CL N+ L G   P++  W C  VSG A  V P  C +L
Sbjct: 416 SLNSRKAPMLLGVEGTSFQDVCLRNVTLLGL--PKTEKWKCKDVSGYASDVFPLSCPQL 462

[Close]

BLAST of CmaCh02G009060 vs. TAIR 10
Match: AT3G62110.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 434.5 bits (1116), Expect = 1.8e-121
Identity = 215/435 (49.43%), Postives = 288/435 (66.21%), Query Frame = 0


Query: 4   FFLFIFICFDALLSPPLAAGELTTCS-GIVPMKYRSDKISIADFGGVGDGHTLNTRAFRA 63
           F L   +   A      + GE   C    +   +R   +SI +FG VGDG TLNT+AF+ 
Sbjct: 5   FLLLYVLLVQAFYGAWCSVGESLHCEYSNLASLHRPHSVSITEFGAVGDGVTLNTKAFQN 64

Query: 64  AIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEPLP 123
           A++ +     +GG  L++P G +LT SF+L SH+TL+L K A I     S NWPV++PLP
Sbjct: 65  ALFYLNSFSDKGGAKLFVPAGQWLTGSFDLISHLTLWLDKGATILGSTSSENWPVVDPLP 124

Query: 124 SYGRGRERPGGRYVSFIHGDGVHDVVITGENGTIDGQGDVWWNMWRTRTLMYTRPNLVEF 183
           SYGRGRE PG R+ S I+G  + DVVITGENGTIDGQG VWW+ +R   L YTRP+LVE 
Sbjct: 125 SYGRGRELPGRRHRSLIYGQNLTDVVITGENGTIDGQGTVWWDWFRNGELNYTRPHLVEL 184

Query: 184 INSHNIIISNVMFLNSPFWNIHPVYCSNVVVRYVTILAPRDSPNTDGIDPVTKLVKLMNS 243
           +NS  +IISN+ FLNSPFWNIHPVYC +VVV+ +TILAP +SPNTDG+DP          
Sbjct: 185 MNSTGLIISNLTFLNSPFWNIHPVYCRDVVVKNLTILAPLESPNTDGVDP---------- 244

Query: 244 DSSNNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRSSYDITIRRISG-SSPFAGVAVGSE 303
           DSS NVCIED YI TGDDLV++KSGWDEYGI+Y R S  I I R++G ++  +G+A+GSE
Sbjct: 245 DSSTNVCIEDCYIVTGDDLVSIKSGWDEYGISYARPSSKIKINRLTGQTTSSSGIAIGSE 304

Query: 304 TSGGVSNVFAEHLSLYDMGVGINIKTNIGRGGFIKNITISDVYMESSRKGLKIASDTGDH 363
            SGGVS ++ + L L++   GI IKT+ GRGG+++N+ I +V +++ +K ++     G+H
Sbjct: 305 MSGGVSEIYIKDLHLFNSNTGIRIKTSAGRGGYVRNVHILNVKLDNVKKAIRFTGKYGEH 364

Query: 364 PDDKFDPNALPIVKDITIKNVWGVNVQQAGSIYGLRNSPFTGICLSNINLRGTARPRSVP 423
           PD+K+DP ALP ++ IT +NV G  +  AG + G+    F  IC  N+ LR     +  P
Sbjct: 365 PDEKYDPKALPAIEKITFENVNGDGIGVAGLLEGIEGDVFKNICFLNVTLRVKKNSKKSP 424

Query: 424 WTCSYVSGAALLVSP 437
           W CS V G +  VSP
Sbjct: 425 WECSNVRGYSQWVSP 429

[Close]

BLAST of CmaCh02G009060 vs. TAIR 10
Match: AT3G16850.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 404.1 bits (1037), Expect = 2.5e-112
Identity = 214/445 (48.09%), Postives = 286/445 (64.27%), Query Frame = 0


Query: 2   LPFFLFIFICFDALLSPPLAAGELTTCSGIVPMKYRSDKISIADFGGVGDGHTLNTRAFR 61
           +P  L   + F  LL      G    C     +  R   +SI +FG VGDG TLNT AF+
Sbjct: 3   MPVALVWLLAFTILLIS--GEGNNAICKENFKLDPRPHSVSILEFGAVGDGKTLNTIAFQ 62

Query: 62  AAIYRIQHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKDAVIKAVQDSSNWPVIEPL 121
            A++ ++    +GG  LY+PPG +LT SFNLTSH+TL+L K A I A  D S+W V+ PL
Sbjct: 63  NAVFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGATILASPDPSHWDVVSPL 122

Query: 122 PSYGRGRERPGGRYVSFIHGDGVHDVVITGENGTIDGQGDVWWNMWRTRTLMYTRPNLVE 181
           PSYGRG E PG RY S I+GD + DVVITGENGT DGQG  WW    + +L Y+RP+++E
Sbjct: 123 PSYGRGIELPGKRYRSLINGDNLIDVVITGENGTFDGQGAAWWEWLESGSLNYSRPHIIE 182

Query: 182 FINSHNIIISNVMFLNSPFWNIHPVYCSNVVVRYVTILAPRDSPNTDGIDPVTKLVKLMN 241
           F++S +I+ISN+ FLN+P  NIHPVYCS + +R V I    DSP+  G+ P         
Sbjct: 183 FVSSKHILISNLTFLNAPAINIHPVYCSQIHIRKVLIETSVDSPHVLGVAP--------- 242

Query: 242 SDSSNNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRSSYDITIRRISGSSPF-AGVAVGS 301
            DSS+NVCIEDS I+ G D V++KSGWD+YGI YGR +  + IR +   SP  AG++ GS
Sbjct: 243 -DSSDNVCIEDSTINVGHDAVSLKSGWDQYGIHYGRPTTAVHIRNLRLKSPTGAGISFGS 302

Query: 302 ETSGGVSNVFAEHLSLYDMGVGINIKTNIGRGGFIKNITISDVYMESSRKGLKIASDTGD 361
           E SGGVS+V  E L+++   +G+  +T  GRGG+I+NITISDV + S    +     TG 
Sbjct: 303 EMSGGVSDVTVERLNIHSSLIGVAFRTTRGRGGYIRNITISDVDLTSVDTAIVANGHTGS 362

Query: 362 HPDDKFDPNALPIVKDITIKNVWGVNVQQAGSIYGLRNSPFTGICLSNINLRGTARPRSV 421
           HPDDKFD +ALP+V  I ++N  GV++  AG++ G+  SPFT ICL++I+L+  +     
Sbjct: 363 HPDDKFDRDALPVVTHIVMRNFTGVDIGVAGNLTGIGESPFTSICLADIHLQTRSEE--- 422

Query: 422 PWTCSYVSGAALLVSPWPCSELTST 446
            W CS VSG +  VSP PC EL S+
Sbjct: 423 SWICSNVSGFSDDVSPEPCQELMSS 432

The following BLAST results are available for this feature:

BLAST of CmaCh02G009060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A7PZL3	1.5e-112	49.14	Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 ...	[more]
Q8RY29	1.1e-27	27.53	Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2	[more]
Q7M1E7	3.0e-17	29.30	Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1	[more]
P43212	1.1e-16	27.02	Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1	[more]
Q9FY19	5.7e-16	29.67	Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1	[more]

BLAST of CmaCh02G009060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23820.1	2.7e-194	73.41	Pectin lyase-like superfamily protein	[more]
AT5G41870.1	2.4e-171	65.33	Pectin lyase-like superfamily protein	[more]
AT4G33440.1	1.5e-125	53.22	Pectin lyase-like superfamily protein	[more]
AT3G62110.1	1.8e-121	49.43	Pectin lyase-like superfamily protein	[more]
AT3G16850.1	2.5e-112	48.09	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006626	Parallel beta-helix repeat	SMART	SM00710	pbh1	coord: 208..234 e-value: 250.0 score: 10.5 coord: 335..356 e-value: 750.0 score: 8.1 coord: 374..408 e-value: 7900.0 score: 0.8 coord: 279..300 e-value: 3700.0 score: 3.1 coord: 306..327 e-value: 3200.0 score: 3.6 coord: 245..277 e-value: 990.0 score: 7.3
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 25..425 e-value: 8.1E-107 score: 359.7
IPR029058	Alpha/Beta hydrolase fold	GENE3D	3.40.50.1820	alpha/beta hydrolase	coord: 572..732 e-value: 8.3E-17 score: 63.4
IPR029058	Alpha/Beta hydrolase fold	SUPERFAMILY	53474	alpha/beta-Hydrolases	coord: 585..725
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 137..428 e-value: 6.3E-36 score: 124.1
None	No IPR available	PANTHER	PTHR31339:SF3	PECTIN LYASE-LIKE SUPERFAMILY PROTEIN	coord: 8..450
None	No IPR available	PANTHER	PTHR31339	PECTIN LYASE-RELATED	coord: 8..450
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 34..443

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G009060.1	CmaCh02G009060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009738	abscisic acid-activated signaling pathway
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0043086	negative regulation of catalytic activity
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0004650	polygalacturonase activity
molecular_function	GO:0004864	protein phosphatase inhibitor activity