CmaCh02G008250 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G008250
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionHistone H2A
LocationCma_Chr02: 4839241 .. 4840117 (+)
RNA-Seq ExpressionCmaCh02G008250
SyntenyCmaCh02G008250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCTAGCGCAAAGGCAAAGAAAGGAGCAGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGTCGGTTTCTCGATCCGTCAAGGCCGGTCTTCAATTCCCCGTCGGCCGTATCGCTCGTTATCTGAAGAAAGGGCGCTACTCTCAACGTGTTGGCACCGGCGCTCCAGTCTACTTGGCAGCCGTGATGGAGTATCTAGCCGCTGAAGTAAACGAGTCGTTCTTTTCTGATTCCTCTTCATCCGAGCAATAGAATCGCCACTGTACTGATCTTGTATTTCTCCGATTTACAGGTTCTTGAATTGGCTGGAAACGCTGCTAGAGACAACAAGAAGAACAGGATCATTCCTAGGCATGTGCTATTGGCGATCAGGAACGACGAGGAACTCGGAAAATTGCTCGCCGGCGTAACTATTGCTAGTGGTGGAGTTCTTCCAAATATTAATCCGATTCTGTTGCCGAAGAAGACAGATAAGGCTGTGAAAGAGCCGAAATCTCCATCAAAGGGCGGAAAGTCGCCGAGCAAGTCGTCTTAAACGGTGAATTAATCTGTAATTTAGGGTTCTATGTTTTGTGGTAAGCGTAGACGAAGATCTAGAGATTAATGTAATCGATATGTTTAATTTACCAATTTACCGGCGAGGAATCAACCTGATGACTTGTTCTGTTCTTACTTCTCTAGAATAATTATGGTTGGATTTACTTTAAACAAATCAAGATCGACCGAGGCGAAATATTCATGGAATTCATTGATCAAGAACAAAACAAATTTCAAATATCGGTTTAAGTAAACTAATCTTCAATCTTCAATGTTGTTCTTGATCAACCCTTGAGAAATGTACCTGTTGCAAAATTTATATTCATTTTAGCAGTAAAAT

mRNA sequence

ATGGAGGCTAGCGCAAAGGCAAAGAAAGGAGCAGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGTCGGTTTCTCGATCCGTCAAGGCCGGTCTTCAATTCCCCGTCGGCCGTATCGCTCGTTATCTGAAGAAAGGGCGCTACTCTCAACGTGTTGGCACCGGCGCTCCAGTCTACTTGGCAGCCGTGATGGAGTATCTAGCCGCTGAAGTTCTTGAATTGGCTGGAAACGCTGCTAGAGACAACAAGAAGAACAGGATCATTCCTAGGCATGTGCTATTGGCGATCAGGAACGACGAGGAACTCGGAAAATTGCTCGCCGGCGTAACTATTGCTAGTGGTGGAGTTCTTCCAAATATTAATCCGATTCTGTTGCCGAAGAAGACAGATAAGGCTGTGAAAGAGCCGAAATCTCCATCAAAGGGCGGAAAGTCGCCGAGCAAGTCGTCTTAAACGGTGAATTAATCTGTAATTTAGGGTTCTATGTTTTGTGGTAAGCGTAGACGAAGATCTAGAGATTAATGTAATCGATATGTTTAATTTACCAATTTACCGGCGAGGAATCAACCTGATGACTTGTTCTGTTCTTACTTCTCTAGAATAATTATGGTTGGATTTACTTTAAACAAATCAAGATCGACCGAGGCGAAATATTCATGGAATTCATTGATCAAGAACAAAACAAATTTCAAATATCGGTTTAAGTAAACTAATCTTCAATCTTCAATGTTGTTCTTGATCAACCCTTGAGAAATGTACCTGTTGCAAAATTTATATTCATTTTAGCAGTAAAAT

Coding sequence (CDS)

ATGGAGGCTAGCGCAAAGGCAAAGAAAGGAGCAGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGTCGGTTTCTCGATCCGTCAAGGCCGGTCTTCAATTCCCCGTCGGCCGTATCGCTCGTTATCTGAAGAAAGGGCGCTACTCTCAACGTGTTGGCACCGGCGCTCCAGTCTACTTGGCAGCCGTGATGGAGTATCTAGCCGCTGAAGTTCTTGAATTGGCTGGAAACGCTGCTAGAGACAACAAGAAGAACAGGATCATTCCTAGGCATGTGCTATTGGCGATCAGGAACGACGAGGAACTCGGAAAATTGCTCGCCGGCGTAACTATTGCTAGTGGTGGAGTTCTTCCAAATATTAATCCGATTCTGTTGCCGAAGAAGACAGATAAGGCTGTGAAAGAGCCGAAATCTCCATCAAAGGGCGGAAAGTCGCCGAGCAAGTCGTCTTAA

Protein sequence

MEASAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNINPILLPKKTDKAVKEPKSPSKGGKSPSKSS
Homology
[Close]
BLAST of CmaCh02G008250 vs. ExPASy Swiss-Prot
Match: P19177 (Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 5.1e-62
Identity = 126/149 (84.56%), Postives = 137/149 (91.95%), Query Frame = 0 

Query: 1   MEASAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60
           ME + KAKKG GGR+GG +KKSV+RSVKAGLQFPVGRI RYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   METAGKAKKGFGGRKGGPRKKSVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AV+EYLAAEVLELAGNAARDNKK RIIPRH+LLA+RNDEELGKLLAGVT A GGVLPNIN
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNIN 120

Query: 121 PILLPKKT-DKAVKEPKSPSKGGKSPSKS 149
           P+LLPKKT +KA KEPKSPSK GKSP K+
Sbjct: 121 PVLLPKKTAEKAAKEPKSPSKAGKSPKKA 149

[Close]
BLAST of CmaCh02G008250 vs. ExPASy Swiss-Prot
Match: Q2HU68 (Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 4.3e-61
Identity = 124/148 (83.78%), Postives = 134/148 (90.54%), Query Frame = 0 

Query: 1   MEASAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60
           M+AS K KKGAGGR+GG +KKSV+RS +AGLQFPVGRI RYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MDASTKTKKGAGGRKGGPRKKSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIA GGVLPNIN
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNIN 120

Query: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKS 149
           PILLPKK +KA    KSPSK  KSP K+
Sbjct: 121 PILLPKKNEKAATTTKSPSKATKSPKKA 148

[Close]
BLAST of CmaCh02G008250 vs. ExPASy Swiss-Prot
Match: Q2HU65 (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.4e-59
Identity = 125/153 (81.70%), Postives = 139/153 (90.85%), Query Frame = 0 

Query: 1   MEASAKAKKGAGGRR-GGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYL 60
           M+AS K KKGAGGR+ GG +KKSV+RS++AGLQFPVGRI RYLKKGRY+QRVGTGAPVYL
Sbjct: 1   MDASTKTKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNI 120
           AAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIA GGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPILLPKKTDKA---VKEPKSPS-KGGKSPSKS 149
           NP+LLPKKT+++    KEPKSP  K GKSP K+
Sbjct: 121 NPVLLPKKTERSNTVSKEPKSPKPKAGKSPKKA 153

[Close]
BLAST of CmaCh02G008250 vs. ExPASy Swiss-Prot
Match: Q9M531 (Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.6e-58
Identity = 124/153 (81.05%), Postives = 135/153 (88.24%), Query Frame = 0 

Query: 1   MEASAKAKKGAGGRR-GGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYL 60
           M+  AK KKGAG R+ GG KKK VSRSVKAGLQFPVGRI R+LKKGRY+QRVG+GAPVYL
Sbjct: 1   MDTGAKLKKGAGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYL 60

Query: 61  AAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNI 120
           AAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIA GGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPILLPKKTDK----AVKEPKSPSKGGKSPSKS 149
           NP+LLPKK +K    A KEPKSP+K  KSP K+
Sbjct: 121 NPVLLPKKAEKAAAAATKEPKSPAKATKSPKKA 153

[Close]
BLAST of CmaCh02G008250 vs. ExPASy Swiss-Prot
Match: Q9LZ46 (Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 4.5e-58
Identity = 125/153 (81.70%), Postives = 133/153 (86.93%), Query Frame = 0 

Query: 1   MEASAKAKKGAGGRR--GGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVY 60
           M++  K KKGA GRR  GG KKK VSRSVK+GLQFPVGRI RYLKKGRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPN 120
           LAAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELG LL GVTIA GGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPILLPKKTDKA---VKEPKSPSKGGKSPSKS 149
           INPILLPKK++KA    K PKSPSK  KSP KS
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

[Close]
BLAST of CmaCh02G008250 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 225.3 bits (573), Expect = 3.2e-59
Identity = 125/153 (81.70%), Postives = 133/153 (86.93%), Query Frame = 0 

Query: 1   MEASAKAKKGAGGRR--GGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVY 60
           M++  K KKGA GRR  GG KKK VSRSVK+GLQFPVGRI RYLKKGRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPN 120
           LAAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELG LL GVTIA GGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPILLPKKTDKA---VKEPKSPSKGGKSPSKS 149
           INPILLPKK++KA    K PKSPSK  KSP KS
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

[Close]
BLAST of CmaCh02G008250 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 211.8 bits (538), Expect = 3.6e-55
Identity = 125/177 (70.62%), Postives = 133/177 (75.14%), Query Frame = 0 

Query: 1   MEASAKAKKGAGGRR--GGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVY 60
           M++  K KKGA GRR  GG KKK VSRSVK+GLQFPVGRI RYLKKGRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVMEYLAAE------------------------VLELAGNAARDNKKNRIIPRHVLLA 120
           LAAV+EYLAAE                        VLELAGNAARDNKKNRIIPRHVLLA
Sbjct: 61  LAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLA 120

Query: 121 IRNDEELGKLLAGVTIASGGVLPNINPILLPKKTDKA---VKEPKSPSKGGKSPSKS 149
           +RNDEELG LL GVTIA GGVLPNINPILLPKK++KA    K PKSPSK  KSP KS
Sbjct: 121 VRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 177

[Close]
BLAST of CmaCh02G008250 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 204.5 bits (519), Expect = 5.8e-53
Identity = 110/147 (74.83%), Postives = 128/147 (87.07%), Query Frame = 0 

Query: 2   EASAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLAA 61
           +A+ K  +GAGGR+GG++KKSVS+SVKAGLQFPVGRIARYLKKGRY+ R G+GAPVYLAA
Sbjct: 5   QATTKPTRGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAA 64

Query: 62  VMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNINP 121
           V+EYLAAEVLELAGNAARDNKKNRI PRH+ LAIRNDEELG+LL GVTIASGGVLPNINP
Sbjct: 65  VLEYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINP 124

Query: 122 ILLPKKTDKAVKEPKSPSKGGKSPSKS 149
           +LLPKK+  +  + +  S   KSP K+
Sbjct: 125 VLLPKKSTASSSQAEKAS-ATKSPKKA 150

[Close]
BLAST of CmaCh02G008250 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-50
Identity = 108/150 (72.00%), Postives = 125/150 (83.33%), Query Frame = 0 

Query: 1   MEASAKAKKGAGGRR--GGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVY 60
           ME++ K KK  GGR+  G  K KSVS+S+KAGLQFPVGRI R+LKKGRY+QR+G GAPVY
Sbjct: 1   MESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVY 60

Query: 61  LAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPN 120
           +AAV+EYLAAEVLELAGNAARDNKK+RIIPRH+LLAIRNDEELGKLL+GVTIA GGVLPN
Sbjct: 61  MAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPN 120

Query: 121 INPILLPKKTDKAVKEPKSPSKGGKSPSKS 149
           IN +LLPKK+     E K+     KSP K+
Sbjct: 121 INSVLLPKKSATKPAEEKATKSPVKSPKKA 150

[Close]
BLAST of CmaCh02G008250 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 176.4 bits (446), Expect = 1.7e-44
Identity = 87/112 (77.68%), Postives = 101/112 (90.18%), Query Frame = 0 

Query: 17  GEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLAAVMEYLAAEVLELAGN 76
           G  KK+ +RS KAGLQFPVGRIAR+LKKG+Y++RVG GAPVYLAAV+EYLAAEVLELAGN
Sbjct: 11  GSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGN 70

Query: 77  AARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNINPILLPKKT 129
           AARDNKK RI+PRH+ LA+RNDEEL KLL  VTIA+GGV+PNI+ +LLPKKT
Sbjct: 71  AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

The following BLAST results are available for this feature:
BLAST of CmaCh02G008250 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P191775.1e-6284.56Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1[more]
Q2HU684.3e-6183.78Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 P... [more]
Q2HU652.4e-5981.70Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P... [more]
Q9M5312.6e-5881.05Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1[more]
Q9LZ464.5e-5881.70Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1[more]
BLAST of CmaCh02G008250 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G02560.13.2e-5981.70histone H2A 12 [more]
AT5G02560.23.6e-5570.62histone H2A 12 [more]
AT5G27670.15.8e-5374.83histone H2A 7 [more]
AT5G59870.11.6e-5072.00histone H2A 6 [more]
AT1G51060.11.7e-4477.68histone H2A 10 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 50..65
score: 81.37
coord: 65..78
score: 89.46
coord: 21..43
score: 69.98
coord: 79..93
score: 73.78
coord: 107..125
score: 72.98
IPR002119Histone H2ASMARTSM00414h2a4coord: 10..130
e-value: 4.9E-79
score: 278.5
IPR002119Histone H2ACDDcd00074H2Acoord: 19..127
e-value: 3.49315E-67
score: 197.558
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 99..132
e-value: 2.7E-18
score: 65.4
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 8..137
e-value: 1.3E-63
score: 214.6
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 24..127
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 15..96
e-value: 2.0E-14
score: 54.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..149
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 8..143
NoneNo IPR availablePANTHERPTHR23430:SF304HISTONE H2Acoord: 8..143
IPR032458Histone H2A conserved sitePROSITEPS00046HISTONE_H2Acoord: 29..35

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G008250.1CmaCh02G008250.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031507 heterochromatin assembly
cellular_component GO:0000775 chromosome, centromeric region
cellular_component GO:0000792 heterochromatin
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity