CmaCh02G007890 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G007890
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RING-type E3 ubiquitin transferase
Location	Cma_Chr02: 4680850 .. 4681986 (+)
RNA-Seq Expression	CmaCh02G007890
Synteny	CmaCh02G007890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCGGTACGGCGTCGTATTGGTGTTACCGGTGCAACCGATTCGTTCGTGCTTGGGTTCAAGACACCATCTCTTGTCCTTACTGTGACGGTGGATTTGTTGAAGCAATCGAAACCGCGTCTTCTCTCCCGGCGGCGAATCTCCACCGTCGATTCTCGCCGTCTGCGATTCACACTTTGGATCAAGATCCGTTTCAGTCTCCTCGCTTGAGCACCCGGCGAAGTCGCCGTAGACTTGGGGATCGGTCGACTTTTAACCCTGTTGTTGTTCTTCGTGGTTCTGCTGACGGCGGCGATGAGGGCGGCGGTGGTGGGGAGAATAATAGCTTCGATATTTACTATGACGATGGTGCTGGGTCTGGTCTTCGTCCGGTTCCGGCGACGATGTCGGAGTTTCTGATGGGGACTGGATTTGATCGGTTGTTGGAGCAGTTGGCTCAACTGGAGATCAACGGGTTTGGCAGATCTGAAAATCCGCCGGCTTCGAAAGCAGCGGTGGAATCAATGCCGACGATTGAGATTTTGGAAAGTCACGTGGATTCAGATTCGCACTGTGCAGTTTGTAAAGAGGCGTTTGTAATAGGAACCGAAGCCCGAGAAATGCCCTGTAAGCACATATATCACTCCGATTGCATAATCCCTTGGCTTTCGATGAGAAATTCCTGTCCGGTCTGCCGACACGAACTGCCATCGGAACGCGTATCTCCAGCCGGCGGGGTTTCAGATCGCGTTGTCGACGAAGAGACCGTAGGGTTAACAATCTGGAGACTCCCTGGCGGTGGATTCGCCGTTGGCCGATTCACCGGCGGTAGACTGACCGGCGAGAGAGATCCACCAGCGGTCTACACCGAAATGGACGGTGGATTCAATGCCAACGGAGTTCCGAGAAGGGTCTCGTGGGCTTCGAGAAGAAGCAGGGGAAGGGAAAACCGAGGAATCGGACGAACATTCCGTAACATCTTTTCTTTTTTCGGAAGATTAAGGTCGTCGAATTCATCTTCTTCTTTGGCTTCGAATGAAACGGAATCTGTTAGTAGAAGCCATAGCCGTTCGAGCTCTTCAGTCTTCAGCAGATACTTGCGAAGGCCAAACAGAACTTGGCTGGAGAATCATACTGAAAATGGCCGATGGTGA

mRNA sequence

ATGGCTTCCGGTACGGCGTCGTATTGGTGTTACCGGTGCAACCGATTCGTTCGTGCTTGGGTTCAAGACACCATCTCTTGTCCTTACTGTGACGGTGGATTTGTTGAAGCAATCGAAACCGCGTCTTCTCTCCCGGCGGCGAATCTCCACCGTCGATTCTCGCCGTCTGCGATTCACACTTTGGATCAAGATCCGTTTCAGTCTCCTCGCTTGAGCACCCGGCGAAGTCGCCGTAGACTTGGGGATCGGTCGACTTTTAACCCTGTTGTTGTTCTTCGTGGTTCTGCTGACGGCGGCGATGAGGGCGGCGGTGGTGGGGAGAATAATAGCTTCGATATTTACTATGACGATGGTGCTGGGTCTGGTCTTCGTCCGGTTCCGGCGACGATGTCGGAGTTTCTGATGGGGACTGGATTTGATCGGTTGTTGGAGCAGTTGGCTCAACTGGAGATCAACGGGTTTGGCAGATCTGAAAATCCGCCGGCTTCGAAAGCAGCGGTGGAATCAATGCCGACGATTGAGATTTTGGAAAGTCACGTGGATTCAGATTCGCACTGTGCAGTTTGTAAAGAGGCGTTTGTAATAGGAACCGAAGCCCGAGAAATGCCCTGTAAGCACATATATCACTCCGATTGCATAATCCCTTGGCTTTCGATGAGAAATTCCTGTCCGGTCTGCCGACACGAACTGCCATCGGAACGCGTATCTCCAGCCGGCGGGGTTTCAGATCGCGTTGTCGACGAAGAGACCGTAGGGTTAACAATCTGGAGACTCCCTGGCGGTGGATTCGCCGTTGGCCGATTCACCGGCGGTAGACTGACCGGCGAGAGAGATCCACCAGCGGTCTACACCGAAATGGACGGTGGATTCAATGCCAACGGAGTTCCGAGAAGGGTCTCGTGGGCTTCGAGAAGAAGCAGGGGAAGGGAAAACCGAGGAATCGGACGAACATTCCGTAACATCTTTTCTTTTTTCGGAAGATTAAGGTCGTCGAATTCATCTTCTTCTTTGGCTTCGAATGAAACGGAATCTGTTAGTAGAAGCCATAGCCGTTCGAGCTCTTCAGTCTTCAGCAGATACTTGCGAAGGCCAAACAGAACTTGGCTGGAGAATCATACTGAAAATGGCCGATGGTGA

Coding sequence (CDS)

ATGGCTTCCGGTACGGCGTCGTATTGGTGTTACCGGTGCAACCGATTCGTTCGTGCTTGGGTTCAAGACACCATCTCTTGTCCTTACTGTGACGGTGGATTTGTTGAAGCAATCGAAACCGCGTCTTCTCTCCCGGCGGCGAATCTCCACCGTCGATTCTCGCCGTCTGCGATTCACACTTTGGATCAAGATCCGTTTCAGTCTCCTCGCTTGAGCACCCGGCGAAGTCGCCGTAGACTTGGGGATCGGTCGACTTTTAACCCTGTTGTTGTTCTTCGTGGTTCTGCTGACGGCGGCGATGAGGGCGGCGGTGGTGGGGAGAATAATAGCTTCGATATTTACTATGACGATGGTGCTGGGTCTGGTCTTCGTCCGGTTCCGGCGACGATGTCGGAGTTTCTGATGGGGACTGGATTTGATCGGTTGTTGGAGCAGTTGGCTCAACTGGAGATCAACGGGTTTGGCAGATCTGAAAATCCGCCGGCTTCGAAAGCAGCGGTGGAATCAATGCCGACGATTGAGATTTTGGAAAGTCACGTGGATTCAGATTCGCACTGTGCAGTTTGTAAAGAGGCGTTTGTAATAGGAACCGAAGCCCGAGAAATGCCCTGTAAGCACATATATCACTCCGATTGCATAATCCCTTGGCTTTCGATGAGAAATTCCTGTCCGGTCTGCCGACACGAACTGCCATCGGAACGCGTATCTCCAGCCGGCGGGGTTTCAGATCGCGTTGTCGACGAAGAGACCGTAGGGTTAACAATCTGGAGACTCCCTGGCGGTGGATTCGCCGTTGGCCGATTCACCGGCGGTAGACTGACCGGCGAGAGAGATCCACCAGCGGTCTACACCGAAATGGACGGTGGATTCAATGCCAACGGAGTTCCGAGAAGGGTCTCGTGGGCTTCGAGAAGAAGCAGGGGAAGGGAAAACCGAGGAATCGGACGAACATTCCGTAACATCTTTTCTTTTTTCGGAAGATTAAGGTCGTCGAATTCATCTTCTTCTTTGGCTTCGAATGAAACGGAATCTGTTAGTAGAAGCCATAGCCGTTCGAGCTCTTCAGTCTTCAGCAGATACTTGCGAAGGCCAAACAGAACTTGGCTGGAGAATCATACTGAAAATGGCCGATGGTGA

Protein sequence

MASGTASYWCYRCNRFVRAWVQDTISCPYCDGGFVEAIETASSLPAANLHRRFSPSAIHTLDQDPFQSPRLSTRRSRRRLGDRSTFNPVVVLRGSADGGDEGGGGGENNSFDIYYDDGAGSGLRPVPATMSEFLMGTGFDRLLEQLAQLEINGFGRSENPPASKAAVESMPTIEILESHVDSDSHCAVCKEAFVIGTEAREMPCKHIYHSDCIIPWLSMRNSCPVCRHELPSERVSPAGGVSDRVVDEETVGLTIWRLPGGGFAVGRFTGGRLTGERDPPAVYTEMDGGFNANGVPRRVSWASRRSRGRENRGIGRTFRNIFSFFGRLRSSNSSSSLASNETESVSRSHSRSSSSVFSRYLRRPNRTWLENHTENGRW

Homology

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BLAST of CmaCh02G007890 vs. ExPASy Swiss-Prot
Match: Q940T5 (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 4.2e-84
Identity = 187/394 (47.46%), Postives = 248/394 (62.94%), Query Frame = 0


Query: 5   TASYWCYRCNRFVRAWVQD------TISCPYCDGGFVEAIETASSLPAANLHRRFSPSAI 64
           TASYWCY C RFV  W         +++CP+CDGGF+E I  +SS  AA      + + +
Sbjct: 15  TASYWCYSCTRFVSVWADQGTTTVGSVACPHCDGGFIEQINDSSS--AATELTIPASTEV 74

Query: 65  HTLDQDPFQSPRLSTRRSRRRLGDRSTFNPVVVLRGSA---DGGDEGGGGGENNSFDIYY 124
            +++ +     R S  R RRR G R +FNPV+VL+G A   + G+EG    +  +F+ YY
Sbjct: 75  RSINNN-----RRSVIR-RRRSGRRPSFNPVIVLQGGAGEREEGEEGDAARDRRAFEFYY 134

Query: 125 DDGAGSGLRPVPATMSEFLMGTGFDRLLEQLAQLEIN--GFGRSENPPASKAAVESMPTI 184
           DDG+GSGLRP+P ++SE LMG+GF+RLLEQL+Q+E +  G GRS NPPASK+A+ES+P +
Sbjct: 135 DDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQIEASATGIGRSGNPPASKSAIESLPRV 194

Query: 185 EILESHVDSDSHCAVCKEAFVIGTEAREMPCKHIYHSDCIIPWLSMRNSCPVCRHELPSE 244
           EI + H+ S+++CAVC E F   TEAREMPCKH++H DCI+PWLS+RNSCPVCR ELPSE
Sbjct: 195 EISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRNSCPVCRFELPSE 254

Query: 245 RVSPAGGVSDRVVDEETVGLTIWRLPGGGFAVGRFTGGRLTGERDPPAVYTEMDGG--FN 304
                   S+   ++  VG+TIWRLPGGGFAVGRF      GER  P V TEMDGG   N
Sbjct: 255 ----PNRRSNNNEEDNAVGMTIWRLPGGGFAVGRFNAAMRDGERVLPVVLTEMDGGGIGN 314

Query: 305 ANGVPRRVSWASRRSRG---RENRGIG----------RTFRNIFSFFGRL---RSSNSSS 364
           +   PRR+SW   RS G    ++ G G          R  R + S   R+   RSS+SSS
Sbjct: 315 SQDGPRRISWV--RSHGTLESDSNGTGSGSGSGGRLRRMVRGMVSLMRRVRPNRSSSSSS 374

[Close]

BLAST of CmaCh02G007890 vs. ExPASy Swiss-Prot
Match: Q9SNB6 (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 5.4e-84
Identity = 179/381 (46.98%), Postives = 240/381 (62.99%), Query Frame = 0


Query: 5   TASYWCYRCNRFVRAWV-QDT---ISCPYCDGGFVEAIETASSLPAANLHRRFSPSAIHT 64
           T SYWCY C RF+  W  QD    + CPYC+GGF+E IE +S+   A +    S   + +
Sbjct: 28  TTSYWCYSCTRFISVWEDQDANAGVLCPYCNGGFIEEIEDSSNSTVAAIPA--STPEVRS 87

Query: 65  LDQDPFQSPRLSTRRS---RRRLGDRSTFNPVVVLRGSADGG-------DEGGGG-GENN 124
           +++         T RS   RRR   R++FNPV+VL G   GG       +EG G   E  
Sbjct: 88  VEE---------THRSIIRRRRSNRRTSFNPVIVLHGGGGGGAGERVENEEGDGATRERR 147

Query: 125 SFDIYYDDGAGSGLRPVPATMSEFLMGTGFDRLLEQLAQLEI--NGFGRSENPPASKAAV 184
           +++ YYDDG+GSGLRP+P ++SE LMG+GF+RLLEQL+Q+E   NG GRS NPPASK+A+
Sbjct: 148 AYEFYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQIEASGNGIGRSGNPPASKSAI 207

Query: 185 ESMPTIEILESHVDSDSHCAVCKEAFVIGTEAREMPCKHIYHSDCIIPWLSMRNSCPVCR 244
           ES+P +EI + H  ++++CAVC E F  G E REMPCKHI+H DCI+PWLS+RNSCPVCR
Sbjct: 208 ESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCPVCR 267

Query: 245 HELPSERVSPAGGVSDRVVDEETVGLTIWRLPGGGFAVGRFTGGRLTGERDPPAVYTEMD 304
            ELPS+ +  +        +E  VG+TIWRLPGGGFAVGRF  G   GER  P V TEMD
Sbjct: 268 FELPSDPIQRSN------EEEHAVGMTIWRLPGGGFAVGRFNAGVREGERILPVVLTEMD 327

Query: 305 -GGFNANGVPRRVSWA-------SRRSRGRENRG--IGRTFRNIFSFFGRLRSS--NSSS 357
            GG  +N  PRR+SW          R+ GR   G  + R  R + SF  R+R S  +S+S
Sbjct: 328 GGGLGSNEGPRRISWVRAHETPEMSRNGGRSGNGGRLRRAVRGMVSFMRRVRPSRGSSNS 387

[Close]

BLAST of CmaCh02G007890 vs. ExPASy Swiss-Prot
Match: O22283 (Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 2.1e-80
Identity = 190/414 (45.89%), Postives = 246/414 (59.42%), Query Frame = 0


Query: 1   MASGTASYWCYRCNRFVRAWVQDTISCPYCDGGFVEAIE-----------TASSLPAANL 60
           MASG  SYWCY C+RFV  WV D+ISCP CDGGF+E I+           T ++      
Sbjct: 1   MASG--SYWCYSCSRFV--WVSDSISCPDCDGGFLELIQEPLDFTPSDSFTTTTTTQHRS 60

Query: 61  HRRF--------SPSAIHTLDQDPFQSPRLSTRRSRRRLGDRSTFNPVVVLRGS--ADGG 120
             RF        +PSA    D  P  +P + TR    R     + NPV+VLRGS  A   
Sbjct: 61  PTRFPPPSSSSSTPSASMHADNSP--TPTIVTRTRSNR-----SPNPVIVLRGSAAAPSS 120

Query: 121 DEGGGGGENNSFDIYYDDGAGSGLRPVPATMSEFLMGTGFDRLLEQLAQLEIN---GFGR 180
           D    G + ++F +YYDDG  SGLRP+P +M+EFL+G+GFDRLL+Q++Q+E+N       
Sbjct: 121 DVVSEGLDRSAFQMYYDDGTDSGLRPLPPSMTEFLLGSGFDRLLDQISQIELNTNRNLRS 180

Query: 181 SENPPASKAAVESMPTIEILESHV--DSDSHCAVCKEAFVIGTEAREMPCKHIYHSDCII 240
            E+PPASK+A+E++P IEI  +H+  DS SHCAVCKE FV+ + AREMPC HIYH DCI+
Sbjct: 181 CEHPPASKSAIEALPLIEIDPTHLLSDSQSHCAVCKENFVLKSSAREMPCNHIYHPDCIL 240

Query: 241 PWLSMRNSCPVCRHELPSERVSPAGGVSDRVV-------DEETVGLTIWRLPGGGFAVGR 300
           PWL++RNSCPVCRHELP+E ++   G +   V       ++   GLTIWRLPGGGFAVGR
Sbjct: 241 PWLAIRNSCPVCRHELPAEDLTDGTGAALTAVTATAEEEEDSAAGLTIWRLPGGGFAVGR 300

Query: 301 FTGGRLTGERDPPAVYTEMDGG-FNANGVPRRVSWASRR-------SRGRENRGIGRTFR 360
             GG   G+R  P VYTE+DGG      +PRRV+W SRR       SR R     GR  R
Sbjct: 301 IPGGWRGGDRMMPVVYTEVDGGRLGDERLPRRVAWGSRRGGRDGGGSRERGGGFAGRIMR 360

Query: 361 NIFSFF----GRLRSSNSSSSLASNETESVSRSHSRSSSSVFSRYLRRPNRTWL 370
            +F  F    G + ++ ++SS + +      R+ S S  S  S   RR  R WL
Sbjct: 361 -LFGCFSGSSGSIAAAAAASSGSGSRIRVTRRTRSFSMFSTASSSSRR--RNWL 400

[Close]

BLAST of CmaCh02G007890 vs. ExPASy Swiss-Prot
Match: Q94AK4 (E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.5e-36
Identity = 91/243 (37.45%), Postives = 133/243 (54.73%), Query Frame = 0


Query: 1   MASGTASYWCYRCNRFVRAWVQDTISCPYCDGGFVEAIETASSLPAANLHRRFSPSAIHT 60
           M+S   ++WC+RC R V    +D + C YC GGFVE I+   S    ++ R   P+    
Sbjct: 1   MSSIRNTHWCHRCQRAVWLRARDAV-CSYCGGGFVEEIDIGPSRAHRDVER--DPTFDLM 60

Query: 61  LDQDPFQSPRLSTRRSRRRLGDR---------STFNPVVVLRGSADGGDEGGGGGENNSF 120
                F   RL+ R   R +  R         S   P+++  G A        GG+N+S 
Sbjct: 61  EAFSAFMRSRLAERSYDREISGRLGSAGSESFSNLAPLLIFGGQA---PFRLAGGDNSSV 120

Query: 121 DIYYDDGAGSGLRPVPAT-MSEFLMGTGFDRLLEQLAQLEINGFGRSENPPASKAAVESM 180
           + +  +GA  G+     T   ++  G G + L+EQL+    +G      PPA K++++++
Sbjct: 121 EAFV-NGAAPGIGIARGTNAGDYFFGPGLEELIEQLS----SGTHHRGPPPAPKSSIDAL 180

Query: 181 PTIEILESHV-DSDSHCAVCKEAFVIGTEAREMPCKHIYHSDCIIPWLSMRNSCPVCRHE 233
           PTI+I + H+  SDSHC VCK+ F + +EA++MPC HIYHSDCI+PWL   NSCPVCR E
Sbjct: 181 PTIKITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKE 232

[Close]

BLAST of CmaCh02G007890 vs. ExPASy Swiss-Prot
Match: O22197 (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.7e-32
Identity = 116/350 (33.14%), Postives = 159/350 (45.43%), Query Frame = 0


Query: 1   MASGTASYWCYRCNRFVRAWVQDTISCPYCDGGFVEAIETASSLP--AANLHRRF--SPS 60
           M+S   ++WC+RC R VR   Q+ + C YC GGFVE ++ A + P      HR       
Sbjct: 1   MSSSRNTHWCHRCQRAVRLHGQEPV-CFYCGGGFVEELDMAQASPFDMFRSHRGVVERDQ 60

Query: 61  AIHTLDQ-DPFQSPRLSTRRSRRRLGDRSTFNPVVVLRGSAD----GGDEGGGGGENNSF 120
               +D    F   RL+ R   R +  R+  +      G A     GG        +N+ 
Sbjct: 61  TFDLMDAFSVFMRNRLAERSHDREIRGRTISSGPENFPGLAPLLIFGGQVPYRLTGDNAV 120

Query: 121 DIYYDDGAGSGLRPVPATMSEFLMGTGFDRLLEQLAQLEINGFGRSENPPASKAAVESMP 180
           +  + +G   G+        ++  G G + L EQL+     G  R   PPA ++A++++P
Sbjct: 121 EALF-NGGSPGIGITRGNTGDYFFGPGLEELFEQLSA----GTTRRGPPPAPRSAIDALP 180

Query: 181 TIEILESHV-DSDSHCAVCKEAFVIGTEAREMPCKHIYHSDCIIPWLSMRNSCPVCRHEL 240
           TI+I + H+  SDS+C VCK+ F +G+EA++MPC HIYHSDCI+PWL   NSCPVCR EL
Sbjct: 181 TIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQEL 240

Query: 241 PSERVSPAGGVSDRVVDEETVGLTIWRLPGGGFAVGRFTGGRLTGERDPPAVYTEMDGGF 300
           PS     A G S                          +  R T  R+            
Sbjct: 241 PS-----ASGPSS-------------------------SQNRTTPTRN------------ 293

Query: 301 NANGVPRRVSWASRRSRGRENRGIGRTFRNIFSFFGRLRSSNSSSSLASN 341
                  R S +S  S  REN   G   RN FS F   RSS SSSS   N
Sbjct: 301 ------YRSSSSSSSSNSREN---GNERRNPFSSFWPFRSSGSSSSSTQN 293

[Close]

BLAST of CmaCh02G007890 vs. TAIR 10
Match: AT5G59550.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 313.2 bits (801), Expect = 3.0e-85
Identity = 187/394 (47.46%), Postives = 248/394 (62.94%), Query Frame = 0


Query: 5   TASYWCYRCNRFVRAWVQD------TISCPYCDGGFVEAIETASSLPAANLHRRFSPSAI 64
           TASYWCY C RFV  W         +++CP+CDGGF+E I  +SS  AA      + + +
Sbjct: 15  TASYWCYSCTRFVSVWADQGTTTVGSVACPHCDGGFIEQINDSSS--AATELTIPASTEV 74

Query: 65  HTLDQDPFQSPRLSTRRSRRRLGDRSTFNPVVVLRGSA---DGGDEGGGGGENNSFDIYY 124
            +++ +     R S  R RRR G R +FNPV+VL+G A   + G+EG    +  +F+ YY
Sbjct: 75  RSINNN-----RRSVIR-RRRSGRRPSFNPVIVLQGGAGEREEGEEGDAARDRRAFEFYY 134

Query: 125 DDGAGSGLRPVPATMSEFLMGTGFDRLLEQLAQLEIN--GFGRSENPPASKAAVESMPTI 184
           DDG+GSGLRP+P ++SE LMG+GF+RLLEQL+Q+E +  G GRS NPPASK+A+ES+P +
Sbjct: 135 DDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQIEASATGIGRSGNPPASKSAIESLPRV 194

Query: 185 EILESHVDSDSHCAVCKEAFVIGTEAREMPCKHIYHSDCIIPWLSMRNSCPVCRHELPSE 244
           EI + H+ S+++CAVC E F   TEAREMPCKH++H DCI+PWLS+RNSCPVCR ELPSE
Sbjct: 195 EISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRNSCPVCRFELPSE 254

Query: 245 RVSPAGGVSDRVVDEETVGLTIWRLPGGGFAVGRFTGGRLTGERDPPAVYTEMDGG--FN 304
                   S+   ++  VG+TIWRLPGGGFAVGRF      GER  P V TEMDGG   N
Sbjct: 255 ----PNRRSNNNEEDNAVGMTIWRLPGGGFAVGRFNAAMRDGERVLPVVLTEMDGGGIGN 314

Query: 305 ANGVPRRVSWASRRSRG---RENRGIG----------RTFRNIFSFFGRL---RSSNSSS 364
           +   PRR+SW   RS G    ++ G G          R  R + S   R+   RSS+SSS
Sbjct: 315 SQDGPRRISWV--RSHGTLESDSNGTGSGSGSGGRLRRMVRGMVSLMRRVRPNRSSSSSS 374

[Close]

BLAST of CmaCh02G007890 vs. TAIR 10
Match: AT3G46620.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 312.8 bits (800), Expect = 3.9e-85
Identity = 179/381 (46.98%), Postives = 240/381 (62.99%), Query Frame = 0


Query: 5   TASYWCYRCNRFVRAWV-QDT---ISCPYCDGGFVEAIETASSLPAANLHRRFSPSAIHT 64
           T SYWCY C RF+  W  QD    + CPYC+GGF+E IE +S+   A +    S   + +
Sbjct: 28  TTSYWCYSCTRFISVWEDQDANAGVLCPYCNGGFIEEIEDSSNSTVAAIPA--STPEVRS 87

Query: 65  LDQDPFQSPRLSTRRS---RRRLGDRSTFNPVVVLRGSADGG-------DEGGGG-GENN 124
           +++         T RS   RRR   R++FNPV+VL G   GG       +EG G   E  
Sbjct: 88  VEE---------THRSIIRRRRSNRRTSFNPVIVLHGGGGGGAGERVENEEGDGATRERR 147

Query: 125 SFDIYYDDGAGSGLRPVPATMSEFLMGTGFDRLLEQLAQLEI--NGFGRSENPPASKAAV 184
           +++ YYDDG+GSGLRP+P ++SE LMG+GF+RLLEQL+Q+E   NG GRS NPPASK+A+
Sbjct: 148 AYEFYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQIEASGNGIGRSGNPPASKSAI 207

Query: 185 ESMPTIEILESHVDSDSHCAVCKEAFVIGTEAREMPCKHIYHSDCIIPWLSMRNSCPVCR 244
           ES+P +EI + H  ++++CAVC E F  G E REMPCKHI+H DCI+PWLS+RNSCPVCR
Sbjct: 208 ESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCPVCR 267

Query: 245 HELPSERVSPAGGVSDRVVDEETVGLTIWRLPGGGFAVGRFTGGRLTGERDPPAVYTEMD 304
            ELPS+ +  +        +E  VG+TIWRLPGGGFAVGRF  G   GER  P V TEMD
Sbjct: 268 FELPSDPIQRSN------EEEHAVGMTIWRLPGGGFAVGRFNAGVREGERILPVVLTEMD 327

Query: 305 -GGFNANGVPRRVSWA-------SRRSRGRENRG--IGRTFRNIFSFFGRLRSS--NSSS 357
            GG  +N  PRR+SW          R+ GR   G  + R  R + SF  R+R S  +S+S
Sbjct: 328 GGGLGSNEGPRRISWVRAHETPEMSRNGGRSGNGGRLRRAVRGMVSFMRRVRPSRGSSNS 387

[Close]

BLAST of CmaCh02G007890 vs. TAIR 10
Match: AT2G39720.1 (RING-H2 finger C2A )

HSP 1 Score: 300.8 bits (769), Expect = 1.5e-81
Identity = 190/414 (45.89%), Postives = 246/414 (59.42%), Query Frame = 0


Query: 1   MASGTASYWCYRCNRFVRAWVQDTISCPYCDGGFVEAIE-----------TASSLPAANL 60
           MASG  SYWCY C+RFV  WV D+ISCP CDGGF+E I+           T ++      
Sbjct: 1   MASG--SYWCYSCSRFV--WVSDSISCPDCDGGFLELIQEPLDFTPSDSFTTTTTTQHRS 60

Query: 61  HRRF--------SPSAIHTLDQDPFQSPRLSTRRSRRRLGDRSTFNPVVVLRGS--ADGG 120
             RF        +PSA    D  P  +P + TR    R     + NPV+VLRGS  A   
Sbjct: 61  PTRFPPPSSSSSTPSASMHADNSP--TPTIVTRTRSNR-----SPNPVIVLRGSAAAPSS 120

Query: 121 DEGGGGGENNSFDIYYDDGAGSGLRPVPATMSEFLMGTGFDRLLEQLAQLEIN---GFGR 180
           D    G + ++F +YYDDG  SGLRP+P +M+EFL+G+GFDRLL+Q++Q+E+N       
Sbjct: 121 DVVSEGLDRSAFQMYYDDGTDSGLRPLPPSMTEFLLGSGFDRLLDQISQIELNTNRNLRS 180

Query: 181 SENPPASKAAVESMPTIEILESHV--DSDSHCAVCKEAFVIGTEAREMPCKHIYHSDCII 240
            E+PPASK+A+E++P IEI  +H+  DS SHCAVCKE FV+ + AREMPC HIYH DCI+
Sbjct: 181 CEHPPASKSAIEALPLIEIDPTHLLSDSQSHCAVCKENFVLKSSAREMPCNHIYHPDCIL 240

Query: 241 PWLSMRNSCPVCRHELPSERVSPAGGVSDRVV-------DEETVGLTIWRLPGGGFAVGR 300
           PWL++RNSCPVCRHELP+E ++   G +   V       ++   GLTIWRLPGGGFAVGR
Sbjct: 241 PWLAIRNSCPVCRHELPAEDLTDGTGAALTAVTATAEEEEDSAAGLTIWRLPGGGFAVGR 300

Query: 301 FTGGRLTGERDPPAVYTEMDGG-FNANGVPRRVSWASRR-------SRGRENRGIGRTFR 360
             GG   G+R  P VYTE+DGG      +PRRV+W SRR       SR R     GR  R
Sbjct: 301 IPGGWRGGDRMMPVVYTEVDGGRLGDERLPRRVAWGSRRGGRDGGGSRERGGGFAGRIMR 360

Query: 361 NIFSFF----GRLRSSNSSSSLASNETESVSRSHSRSSSSVFSRYLRRPNRTWL 370
            +F  F    G + ++ ++SS + +      R+ S S  S  S   RR  R WL
Sbjct: 361 -LFGCFSGSSGSIAAAAAASSGSGSRIRVTRRTRSFSMFSTASSSSRR--RNWL 400

[Close]

BLAST of CmaCh02G007890 vs. TAIR 10
Match: AT3G56580.2 (RING/U-box superfamily protein )

HSP 1 Score: 153.3 bits (386), Expect = 3.9e-37
Identity = 91/243 (37.45%), Postives = 133/243 (54.73%), Query Frame = 0


Query: 1   MASGTASYWCYRCNRFVRAWVQDTISCPYCDGGFVEAIETASSLPAANLHRRFSPSAIHT 60
           M+S   ++WC+RC R V    +D + C YC GGFVE I+   S    ++ R   P+    
Sbjct: 1   MSSIRNTHWCHRCQRAVWLRARDAV-CSYCGGGFVEEIDIGPSRAHRDVER--DPTFDLM 60

Query: 61  LDQDPFQSPRLSTRRSRRRLGDR---------STFNPVVVLRGSADGGDEGGGGGENNSF 120
                F   RL+ R   R +  R         S   P+++  G A        GG+N+S 
Sbjct: 61  EAFSAFMRSRLAERSYDREISGRLGSAGSESFSNLAPLLIFGGQA---PFRLAGGDNSSV 120

Query: 121 DIYYDDGAGSGLRPVPAT-MSEFLMGTGFDRLLEQLAQLEINGFGRSENPPASKAAVESM 180
           + +  +GA  G+     T   ++  G G + L+EQL+    +G      PPA K++++++
Sbjct: 121 EAFV-NGAAPGIGIARGTNAGDYFFGPGLEELIEQLS----SGTHHRGPPPAPKSSIDAL 180

Query: 181 PTIEILESHV-DSDSHCAVCKEAFVIGTEAREMPCKHIYHSDCIIPWLSMRNSCPVCRHE 233
           PTI+I + H+  SDSHC VCK+ F + +EA++MPC HIYHSDCI+PWL   NSCPVCR E
Sbjct: 181 PTIKITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKE 232

[Close]

BLAST of CmaCh02G007890 vs. TAIR 10
Match: AT3G56580.1 (RING/U-box superfamily protein )

HSP 1 Score: 153.3 bits (386), Expect = 3.9e-37
Identity = 91/243 (37.45%), Postives = 133/243 (54.73%), Query Frame = 0


Query: 1   MASGTASYWCYRCNRFVRAWVQDTISCPYCDGGFVEAIETASSLPAANLHRRFSPSAIHT 60
           M+S   ++WC+RC R V    +D + C YC GGFVE I+   S    ++ R   P+    
Sbjct: 1   MSSIRNTHWCHRCQRAVWLRARDAV-CSYCGGGFVEEIDIGPSRAHRDVER--DPTFDLM 60

Query: 61  LDQDPFQSPRLSTRRSRRRLGDR---------STFNPVVVLRGSADGGDEGGGGGENNSF 120
                F   RL+ R   R +  R         S   P+++  G A        GG+N+S 
Sbjct: 61  EAFSAFMRSRLAERSYDREISGRLGSAGSESFSNLAPLLIFGGQA---PFRLAGGDNSSV 120

Query: 121 DIYYDDGAGSGLRPVPAT-MSEFLMGTGFDRLLEQLAQLEINGFGRSENPPASKAAVESM 180
           + +  +GA  G+     T   ++  G G + L+EQL+    +G      PPA K++++++
Sbjct: 121 EAFV-NGAAPGIGIARGTNAGDYFFGPGLEELIEQLS----SGTHHRGPPPAPKSSIDAL 180

Query: 181 PTIEILESHV-DSDSHCAVCKEAFVIGTEAREMPCKHIYHSDCIIPWLSMRNSCPVCRHE 233
           PTI+I + H+  SDSHC VCK+ F + +EA++MPC HIYHSDCI+PWL   NSCPVCR E
Sbjct: 181 PTIKITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKE 232

The following BLAST results are available for this feature:

BLAST of CmaCh02G007890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940T5	4.2e-84	47.46	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 ...	[more]
Q9SNB6	5.4e-84	46.98	E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 ...	[more]
O22283	2.1e-80	45.89	Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q94AK4	5.5e-36	37.45	E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV...	[more]
O22197	1.7e-32	33.14	Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]

BLAST of CmaCh02G007890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59550.1	3.0e-85	47.46	zinc finger (C3HC4-type RING finger) family protein	[more]
AT3G46620.1	3.9e-85	46.98	zinc finger (C3HC4-type RING finger) family protein	[more]
AT2G39720.1	1.5e-81	45.89	RING-H2 finger C2A	[more]
AT3G56580.2	3.9e-37	37.45	RING/U-box superfamily protein	[more]
AT3G56580.1	3.9e-37	37.45	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 186..226 e-value: 4.7E-7 score: 39.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 185..227 e-value: 2.4E-10 score: 40.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 186..227 score: 12.002429
IPR039525	E3 ubiquitin-protein ligase RNF126-like, zinc-ribbon	PFAM	PF14369	zinc_ribbon_9	coord: 7..38 e-value: 1.4E-13 score: 50.9
IPR010543	Domain of unknown function DUF1117	PFAM	PF06547	DUF1117	coord: 251..362 e-value: 2.3E-40 score: 137.6
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 152..233 e-value: 4.7E-21 score: 76.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 330..349
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 5..315
None	No IPR available	PANTHER	PTHR15710:SF24	OS05G0110000 PROTEIN	coord: 5..315
None	No IPR available	CDD	cd16667	RING-H2_RNF126_like	coord: 186..227 e-value: 1.01583E-23 score: 90.4548
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 166..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G007890.1	CmaCh02G007890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006810	transport
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016020	membrane
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0061630	ubiquitin protein ligase activity