Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACCACGGTCGCAACCATTGGAGCTGTTAATAGAACATTGGTACTGTTTCTTCCCGCATTTTGCTTCAGTACATCTTTTGGGTTGTTTGATGGAGAATAGACTCAATTTGTTGAATAATATATTCTTTTCTCTATGGGTTTCATCTTTCAATCATGAATGTCATTGTAACTTAAAGCTTCACATGTTGCAAAATATGGAGGATTTTATTGTCATTATAACTTGTATAAAAGAATGAAAGTAAAATGATCCTCACCATCCTATCATTAATCCTATGCAGTTAAACAACAGTAACTATGGAGGTTTAGTTCCAAACTCTGCGTTTTTGGGCAGAAGGATGAAGAATTTCAGTTCCAGATTCACCACCACCTCAAATATGGTGATTGGAAACTTCAAGATTGTTGCCGAGTATGATGAGGAGAAGCAGACCGAGAAGGACAAATGGCGAGGCCTTGCTTTCGATACATCTGATGACCAGCAAGACATTGCCAGAGGGAAGGGATTGGCAGATCCTCTTTTTCAAGCTCCCATGGGGACAGGAACTCACAATGCTATCATGAGTTCATATGAATACATCAGCGCTGGACTTCGGCAGTATGTGTTAATATAGAATTTTGCAGTTGAGTTGGAGATTCTTGTTCTAGTTTACTTATAGTATCACAATCTTTCAGATACAACCTCGACAATAATGTGGATGGATTTTACATAGCTCCAGCGTTCATGGACAAACTTGTGGTTCACATCGTCAAGAACTTCATAAGCCTGCCAAACATTAAGGTTAAAAATACGGTTGACACATGATATAGTTCTGGTTTGTCTTCCATTGCTAACTTGCCAATCTTCTTGGATACATTTAGGTTCCTCTCATTCTTGGTATTTGGGGAGGTAAAGGTCAAGGAAAGTCTTTCCAGTGTGAACTTGTATTTGCCAAGATGGGAATCAAGTGAGTTCAAGATCCAGCTAGTTCTAAGTTAGTTCTTTGGAGGGTTCAAGTATAATATACACATTTCTTATTCTCTGAAACTGTTAGGGTCTTAATTTTGTTTAGTTATGATGAAATTTCAGCCCTATTATGATGAGTGCTGGGGAATTAGAAAGTGGGAATGCAGGAGAACCTGCAAAATTGATCAGGCAAAGATATAGAGAGGCTGCTGATCTCATCAAGAAAGGGAAAATGTGTTGCCTTTTAATCAATGATCTTGATGCTGGAGCTGGAAGGTTTGGTGGGACTACCCAGTACACAGTGAACAATCAGATGGTAAATGCTACTCTTATGAACATTGCTGACAACCCAACAAATGTGCAGCTTCCAGGCTTGTATAACAAAGAAGAAAATCCCAGAGTTCCCATCATAGTAACTGGTAATGACTTCTCAACATTATACGCCCCCCTCATTCGTGACGGTCGTATGGAGAAGTTCTATTGGGCTCCAACTCATGAAGATTGTATTGGTATTTGCACTGGAATATTTAGGACTGACGGTGTGCCTAAAGAGGACATTGTCAAACTCGTTGGCACCTTCCCGGGGCAATCGATCGGTAAGCTTCACAAACTTAGGGTAGCTGTAACCAAGCATTTCTCAATGGAAGAAGAATATTTGCCAGCATAAACCAATCACAGTATAAATTCTTAATGGAGTAGTTCAGTTGAGTTGATTGAAAATGATCTTCTTTTACAGACGTGTAGCATGATTTAGAAGTTTTGGAACTGTTTTTGCAGACTTCTTTGGTGCTTTGAGAGCTCGAGTTTATGATGACGAAGTTAGAAAGTGGGCTGCCGGCGTTGGGGTTGAGAGAATCGGAAAAAGTCTTGTTAACTCAAAGGAAGGTCCCCCAACTTTTGACCAACCAAAAATGACACTAGAAAAGCTTCTGGAATATGGCAACATGCTCATCAAGGAACAGGAGAATGTGATGAGAGTTAAACTGGCTGAGAAGTATTTAAAAGAAGCTGCTCTTGGAGATGCAAATGAGGATGTTTTTCAGTTTCAAACTTCTCTGGGTAAGTAACTCTTACATTCAAAGTTGTCTTGATCATTAGTTAAATGATATTTAATTTAAACTAATTATTCTTTTTTGAAAATTTTGCACAAACCACTCATGAACGATGAGAATTGTTACGATCATACCCTTGATCTTTTAATTTGATTAGTCAATTATGTACTGTGTTAAGTGTTGCAATCCACTCCTTTTTGTTCGTTACATGTTAGAATCGGCTTCGTGAACGATGAGATTTGTTACAATCATACCCTATTACTTTTAATTGGATTAGTCAGTCGTGTACTGTGTTTAGTGTTGCAATCAACTCCTCCCCTTGAACTTAACAAGGCGGAGGTGGTTGATTAACAAGGTAGTAGGTGGTAGGTGACTTTTACATTCGTGTATTTATCAATTTTTTCTTTTGAACTTTAATTTACATTAATTATTATTATTATTTTCAATTTTAAAGATTCAATGGGGGAAGAGCAACGCAACAGGTTAACATCACTGTTCCTGAAGGCTGTGCAGATTCATCTGCTAAAAACCGAGTCCTAACAGCCAGATGCGACAACAAAAGCTTCCGGTATTCACTTTTACTCGTACTGATATATATTACAAATGATTTTTGATGAAACAAATAATATTGATTTGCTTTTGCTCCAGCAATGTAAATTGTTTATGGTAGAATTGATTTTTTTTAAATAGGAACTATTTAAAATAGTTGCCAAATGTTGCCAATCTAAACCAAAATATATGCCATTTCAATGCCATCACAGAAGAGAATTGGTAAAGAACATATACTGCCAAGTGTGTGTTACCTCCTTCCAGAATGATACCCAATTGTTTTGATGTGTTCTTGACAGAAAGGTGGCTGAAAGACTGCATTCTACATTTCCATGCTATAAGCTATAAGCCTAATTCCTTCTTCAACTTCAAAAGAGTGGCTTCTATCTCGTCGATATTCTCCTCGATACTACTACTACTCTTGTTGCCTTGATTTCGAACATTGTTTCTTGTTTCATCTGTGTTCGAAGTTCTGAAAGAATCCGTCTTCTGAGATGCTTTGTTGTTGTCGTTCGATTCAACTTCTGAATCATCAGTTATGTTGAGTTCTTTCTCTAGAAACTCTACAAATTCCTCCCCAATTTCCTGAAATATGTAAATACAAAGGGTTCATTTTGCAATTCATAGCATTTTTCTTTTTCTGACCAGTTGGTTTAATAGATCCTTC
mRNA sequence
ATGGCTACCACGGTCGCAACCATTGGAGCTGTTAATAGAACATTGTTAAACAACAGTAACTATGGAGGTTTAGTTCCAAACTCTGCGTTTTTGGGCAGAAGGATGAAGAATTTCAGTTCCAGATTCACCACCACCTCAAATATGGTGATTGGAAACTTCAAGATTGTTGCCGAGTATGATGAGGAGAAGCAGACCGAGAAGGACAAATGGCGAGGCCTTGCTTTCGATACATCTGATGACCAGCAAGACATTGCCAGAGGGAAGGGATTGGCAGATCCTCTTTTTCAAGCTCCCATGGGGACAGGAACTCACAATGCTATCATGAGTTCATATGAATACATCAGCGCTGGACTTCGGCAATACAACCTCGACAATAATGTGGATGGATTTTACATAGCTCCAGCGTTCATGGACAAACTTGTGGTTCACATCGTCAAGAACTTCATAAGCCTGCCAAACATTAAGGTTCCTCTCATTCTTGGTATTTGGGGAGGTAAAGGTCAAGGAAAGTCTTTCCAGTGTGAACTTGTATTTGCCAAGATGGGAATCAACCCTATTATGATGAGTGCTGGGGAATTAGAAAGTGGGAATGCAGGAGAACCTGCAAAATTGATCAGGCAAAGATATAGAGAGGCTGCTGATCTCATCAAGAAAGGGAAAATGTGTTGCCTTTTAATCAATGATCTTGATGCTGGAGCTGGAAGGTTTGGTGGGACTACCCAGTACACAGTGAACAATCAGATGGTAAATGCTACTCTTATGAACATTGCTGACAACCCAACAAATGTGCAGCTTCCAGGCTTGTATAACAAAGAAGAAAATCCCAGAGTTCCCATCATAGTAACTGGTAATGACTTCTCAACATTATACGCCCCCCTCATTCGTGACGGTCGTATGGAGAAGTTCTATTGGGCTCCAACTCATGAAGATTGTATTGGTATTTGCACTGGAATATTTAGGACTGACGGTGTGCCTAAAGAGGACATTGTCAAACTCGTTGGCACCTTCCCGGGGCAATCGATCGACTTCTTTGGTGCTTTGAGAGCTCGAGTTTATGATGACGAAGTTAGAAAGTGGGCTGCCGGCGTTGGGGTTGAGAGAATCGGAAAAAGTCTTGTTAACTCAAAGGAAGGTCCCCCAACTTTTGACCAACCAAAAATGACACTAGAAAAGCTTCTGGAATATGGCAACATGCTCATCAAGGAACAGGAGAATGTGATGAGAGTTAAACTGGCTGAGAAGTATTTAAAAGAAGCTGCTCTTGGAGATGCAAATGAGGATGTTTTTCAGTTTCAAACTTCTCTGGGTAAATTCAATGGGGGAAGAGCAACGCAACAGGTTAACATCACTGTTCCTGAAGGCTGTGCAGATTCATCTGCTAAAAACCGAGTCCTAACAGCCAGATGCGACAACAAAAGCTTCCGAAAGGTGGCTGAAAGACTGCATTCTACATTTCCATGCTATAAGCTATAAGCCTAATTCCTTCTTCAACTTCAAAAGAGTGGCTTCTATCTCGTCGATATTCTCCTCGATACTACTACTACTCTTGTTGCCTTGATTTCGAACATTGTTTCTTGTTTCATCTGTGTTCGAAGTTCTGAAAGAATCCGTCTTCTGAGATGCTTTGTTGTTGTCGTTCGATTCAACTTCTGAATCATCAGTTATGTTGAGTTCTTTCTCTAGAAACTCTACAAATTCCTCCCCAATTTCCTGAAATATGTAAATACAAAGGGTTCATTTTGCAATTCATAGCATTTTTCTTTTTCTGACCAGTTGGTTTAATAGATCCTTC
Coding sequence (CDS)
ATGGCTACCACGGTCGCAACCATTGGAGCTGTTAATAGAACATTGTTAAACAACAGTAACTATGGAGGTTTAGTTCCAAACTCTGCGTTTTTGGGCAGAAGGATGAAGAATTTCAGTTCCAGATTCACCACCACCTCAAATATGGTGATTGGAAACTTCAAGATTGTTGCCGAGTATGATGAGGAGAAGCAGACCGAGAAGGACAAATGGCGAGGCCTTGCTTTCGATACATCTGATGACCAGCAAGACATTGCCAGAGGGAAGGGATTGGCAGATCCTCTTTTTCAAGCTCCCATGGGGACAGGAACTCACAATGCTATCATGAGTTCATATGAATACATCAGCGCTGGACTTCGGCAATACAACCTCGACAATAATGTGGATGGATTTTACATAGCTCCAGCGTTCATGGACAAACTTGTGGTTCACATCGTCAAGAACTTCATAAGCCTGCCAAACATTAAGGTTCCTCTCATTCTTGGTATTTGGGGAGGTAAAGGTCAAGGAAAGTCTTTCCAGTGTGAACTTGTATTTGCCAAGATGGGAATCAACCCTATTATGATGAGTGCTGGGGAATTAGAAAGTGGGAATGCAGGAGAACCTGCAAAATTGATCAGGCAAAGATATAGAGAGGCTGCTGATCTCATCAAGAAAGGGAAAATGTGTTGCCTTTTAATCAATGATCTTGATGCTGGAGCTGGAAGGTTTGGTGGGACTACCCAGTACACAGTGAACAATCAGATGGTAAATGCTACTCTTATGAACATTGCTGACAACCCAACAAATGTGCAGCTTCCAGGCTTGTATAACAAAGAAGAAAATCCCAGAGTTCCCATCATAGTAACTGGTAATGACTTCTCAACATTATACGCCCCCCTCATTCGTGACGGTCGTATGGAGAAGTTCTATTGGGCTCCAACTCATGAAGATTGTATTGGTATTTGCACTGGAATATTTAGGACTGACGGTGTGCCTAAAGAGGACATTGTCAAACTCGTTGGCACCTTCCCGGGGCAATCGATCGACTTCTTTGGTGCTTTGAGAGCTCGAGTTTATGATGACGAAGTTAGAAAGTGGGCTGCCGGCGTTGGGGTTGAGAGAATCGGAAAAAGTCTTGTTAACTCAAAGGAAGGTCCCCCAACTTTTGACCAACCAAAAATGACACTAGAAAAGCTTCTGGAATATGGCAACATGCTCATCAAGGAACAGGAGAATGTGATGAGAGTTAAACTGGCTGAGAAGTATTTAAAAGAAGCTGCTCTTGGAGATGCAAATGAGGATGTTTTTCAGTTTCAAACTTCTCTGGGTAAATTCAATGGGGGAAGAGCAACGCAACAGGTTAACATCACTGTTCCTGAAGGCTGTGCAGATTCATCTGCTAAAAACCGAGTCCTAACAGCCAGATGCGACAACAAAAGCTTCCGAAAGGTGGCTGAAAGACTGCATTCTACATTTCCATGCTATAAGCTATAA
Protein sequence
MATTVATIGAVNRTLLNNSNYGGLVPNSAFLGRRMKNFSSRFTTTSNMVIGNFKIVAEYDEEKQTEKDKWRGLAFDTSDDQQDIARGKGLADPLFQAPMGTGTHNAIMSSYEYISAGLRQYNLDNNVDGFYIAPAFMDKLVVHIVKNFISLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLLINDLDAGAGRFGGTTQYTVNNQMVNATLMNIADNPTNVQLPGLYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTHEDCIGICTGIFRTDGVPKEDIVKLVGTFPGQSIDFFGALRARVYDDEVRKWAAGVGVERIGKSLVNSKEGPPTFDQPKMTLEKLLEYGNMLIKEQENVMRVKLAEKYLKEAALGDANEDVFQFQTSLGKFNGGRATQQVNITVPEGCADSSAKNRVLTARCDNKSFRKVAERLHSTFPCYKL
Homology
BLAST of CmaCh02G007820 vs. ExPASy Swiss-Prot
Match:
Q01587 (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus OX=3659 PE=2 SV=1)
HSP 1 Score: 758.8 bits (1958), Expect = 3.7e-218
Identity = 373/411 (90.75%), Postives = 388/411 (94.40%), Query Frame = 0
Query: 1 MATTVATIGAVNRTLLNNSNYGGLVPNSAFLGRRMKNFSSRFTTTSNMVIGNFKIVAEYD 60
MA TV+TIGAVNRT LNNSNYGGLVPNSAFLG R+K SSRF TTS MV GNFKIVAE D
Sbjct: 1 MAATVSTIGAVNRTTLNNSNYGGLVPNSAFLGSRLK-VSSRF-TTSKMVTGNFKIVAEQD 60
Query: 61 EEKQTEKDKWRGLAFDTSDDQQDIARGKGLADPLFQAPMGTGTHNAIMSSYEYISAGLRQ 120
EEKQTEKDKWRGLAFDTSDDQQDI RGKGLADPLFQAPMGTGTHNA++SSYEYISAGLR
Sbjct: 61 EEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRD 120
Query: 121 YNLDNNVDGFYIAPAFMDKLVVHIVKNFISLPNIKVPLILGIWGGKGQGKSFQCELVFAK 180
Y+ DNNVDGFYIAPAFMDKL VHIVKNF++LPNIKVPLILG+WGGKGQGKSFQCELVFAK
Sbjct: 121 YSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFAK 180
Query: 181 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLLINDLDAGAGRFGGTT 240
MGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGR GGTT
Sbjct: 181 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTT 240
Query: 241 QYTVNNQMVNATLMNIADNPTNVQLPGLYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 300
QYTVNNQMVNATLMNIADNPTNVQLPG+YNKEENPRVPIIVTGNDFSTLYAPLIRDGRM+
Sbjct: 241 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMD 300
Query: 301 KFYWAPTHEDCIGICTGIFRTDGVPKEDIVKLVGTFPGQSIDFFGALRARVYDDEVRKWA 360
KFYWAPT ED IGICTGIFRTDGVP EDIVKLV TFPGQSIDFFGALRARVYDDEVRKWA
Sbjct: 301 KFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWA 360
Query: 361 AGVGVERIGKSLVNSKEGPPTFDQPKMTLEKLLEYGNMLIKEQENVMRVKL 412
GVGVERIG++LVNSKE PPTFDQPKMT+EKLLEYGNML+ EQENV RVKL
Sbjct: 361 VGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409
BLAST of CmaCh02G007820 vs. ExPASy Swiss-Prot
Match:
Q7X9A0 (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata OX=66636 GN=RCA1 PE=1 SV=1)
HSP 1 Score: 721.8 bits (1862), Expect = 5.0e-207
Identity = 362/478 (75.73%), Postives = 404/478 (84.52%), Query Frame = 0
Query: 1 MATTVATIGAVNRTLLNNSNYG---GLVPNSAFLGRRMKNFSSRFTTTSNMVIGNFKIVA 60
MA +T+GAVNR L+ + G LVP++AF G +K +++F S+ GNFKIVA
Sbjct: 1 MAAAYSTVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASS---GNFKIVA 60
Query: 61 -EYDEEKQTEKDKWRGLAFDTSDDQQDIARGKGLADPLFQAPMGTGTHNAIMSSYEYISA 120
E E++QT+KDKW+GLA+D SDDQQDI RGKG+ D LFQAPM +GTH A+MSSY+YIS
Sbjct: 61 QEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQ 120
Query: 121 GLRQYNLDNNVDGFYIAPAFMDKLVVHIVKNFISLPNIKVPLILGIWGGKGQGKSFQCEL 180
GLRQYNLDNN+DGFYIAPAFMDKLVVHI KNF+SLPNIK+PLILGIWGGKGQGKSFQCEL
Sbjct: 121 GLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCEL 180
Query: 181 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLLINDLDAGAGRF 240
VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGR
Sbjct: 181 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 240
Query: 241 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGLYNKEENPRVPIIVTGNDFSTLYAPLIRD 300
GGTTQYTVNNQMVNATLMNIADNPTNVQLPG+YNKEENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 241 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 300
Query: 301 GRMEKFYWAPTHEDCIGICTGIFRTDGVPKEDIVKLVGTFPGQSIDFFGALRARVYDDEV 360
GRMEKFYWAPT ED IG+C GIFRTD V +DIVKLV TFPGQSIDFFGALRARVY DEV
Sbjct: 301 GRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEV 360
Query: 361 RKWAAGVGVERIGKSLVNSKEGPPTFDQPKMTLEKLLEYGNMLIKEQENVMRVKLAEKYL 420
RKW + VGV+ IGK LVNSKEGPP+F+QPKMT++KLL YG ML++EQENV RV+LA+KY+
Sbjct: 361 RKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYM 420
Query: 421 KEAALGDANEDVFQFQTSLGKFNGGRATQQV-NITVPEGCADSSAKNRVLTARCDNKS 474
EAALGDAN D + G F GG+A QQV N+ VPEGC D A N TAR D+ S
Sbjct: 421 SEAALGDANNDAIK----RGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGS 471
BLAST of CmaCh02G007820 vs. ExPASy Swiss-Prot
Match:
Q40281 (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica OX=3750 GN=RCA PE=2 SV=1)
HSP 1 Score: 708.8 bits (1828), Expect = 4.4e-203
Identity = 350/438 (79.91%), Postives = 382/438 (87.21%), Query Frame = 0
Query: 1 MATTVATIGAVNRT--LLNNSNYGGLVPNSAFLGRRMKNFSSRFTTTSNMVIGNFKIVAE 60
MAT V+TIG+VNR LN S+ VP+S FLG +K +SRF T S + G+ +IVA
Sbjct: 1 MATAVSTIGSVNRAPPNLNGSSSSASVPSSTFLGSSLKKVNSRF-TNSKVSSGSLRIVAS 60
Query: 61 YDEEKQTEKDKWRGLAFDTSDDQQDIARGKGLADPLFQAPMGTGTHNAIMSSYEYISAGL 120
DE+KQT+KD+W+GLAFDTSDDQQDI RGKG D LFQAP G+GTH AIMSSYEYIS GL
Sbjct: 61 VDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGL 120
Query: 121 RQYNLDNNVDGFYIAPAFMDKLVVHIVKNFISLPNIKVPLILGIWGGKGQGKSFQCELVF 180
RQYN DNN+DG+YIAPAFMDKLVVHI KNF++LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 121 RQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVF 180
Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLLINDLDAGAGRFGG 240
AKM I+PIMMSAGELESGNAGEPAKLIRQRYREAAD+I+KGKMC L INDLDAGAGR GG
Sbjct: 181 AKMRISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGG 240
Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGLYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 300
TTQYTVNNQMVNATLMNIADNPTNVQLPG+YNKEENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 300
Query: 301 MEKFYWAPTHEDCIGICTGIFRTDGVPKEDIVKLVGTFPGQSIDFFGALRARVYDDEVRK 360
MEKFYWAPT ED IG+C GIFR+D V KEDIVKLV TFPGQSIDFFGALRARVYDDEVRK
Sbjct: 301 MEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360
Query: 361 WAAGVGVERIGKSLVNSKEGPPTFDQPKMTLEKLLEYGNMLIKEQENVMRVKLAEKYLKE 420
W GVGV+ IGK LVNSKEGPPTF+QPKMT+EKLLEYGNML++EQENV RV+LA+KYL E
Sbjct: 361 WITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSE 420
Query: 421 AALGDANEDVFQFQTSLG 437
AALGDAN D T G
Sbjct: 421 AALGDANSDAMNTGTFYG 437
BLAST of CmaCh02G007820 vs. ExPASy Swiss-Prot
Match:
Q7X999 (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata OX=66636 GN=RCA2 PE=2 SV=1)
HSP 1 Score: 703.0 bits (1813), Expect = 2.4e-201
Identity = 343/434 (79.03%), Postives = 384/434 (88.48%), Query Frame = 0
Query: 1 MATTVATIGAVNRTLLNNSNYG---GLVPNSAFLGRRMKNFSSRFTTTSNMVIGNFKIVA 60
MA +T+GAVNR L+ + G LVP++AF G +K +++F S+ GNFKIVA
Sbjct: 1 MAAAYSTVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASS---GNFKIVA 60
Query: 61 -EYDEEKQTEKDKWRGLAFDTSDDQQDIARGKGLADPLFQAPMGTGTHNAIMSSYEYISA 120
E E++QT+KDKW+GLA+D SDDQQDI RGKG+ D LFQAPM +GTH A+MSSY+YIS
Sbjct: 61 QEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQ 120
Query: 121 GLRQYNLDNNVDGFYIAPAFMDKLVVHIVKNFISLPNIKVPLILGIWGGKGQGKSFQCEL 180
GLRQYNLDNN+DGFYIAPAFMDKLVVHI KNF+SLPNIK+PLILGIWGGKGQGKSFQCEL
Sbjct: 121 GLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCEL 180
Query: 181 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLLINDLDAGAGRF 240
VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGR
Sbjct: 181 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 240
Query: 241 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGLYNKEENPRVPIIVTGNDFSTLYAPLIRD 300
GGTTQYTVNNQMVNATLMNIADNPTNVQLPG+YNKEENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 241 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 300
Query: 301 GRMEKFYWAPTHEDCIGICTGIFRTDGVPKEDIVKLVGTFPGQSIDFFGALRARVYDDEV 360
GRMEKFYWAPT ED IG+C GIFRTD VP+EDIVK+V FPGQSIDFFGALRARVYDDEV
Sbjct: 301 GRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEV 360
Query: 361 RKWAAGVGVERIGKSLVNSKEGPPTFDQPKMTLEKLLEYGNMLIKEQENVMRVKLAEKYL 420
RKW + VGV+ IGK LVNSKEGPPTF+QPKMT++KLL+YGNML++EQENV RV+LA+KY+
Sbjct: 361 RKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYM 420
Query: 421 KEAALGDANEDVFQ 431
EAALGDAN+D +
Sbjct: 421 SEAALGDANQDAIK 431
BLAST of CmaCh02G007820 vs. ExPASy Swiss-Prot
Match:
P10896 (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RCA PE=1 SV=2)
HSP 1 Score: 699.5 bits (1804), Expect = 2.7e-200
Identity = 352/474 (74.26%), Postives = 393/474 (82.91%), Query Frame = 0
Query: 1 MATTVATIGAVNRT--LLNNSNYGGL-VPNSAFLGRRMKNFSSRFTTTSNMVIGNFKIVA 60
MA V+T+GA+NR LN S G + P S FLG+++ SRF ++ G+FK++A
Sbjct: 1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTV-SRFAQSNKKSNGSFKVLA 60
Query: 61 EYDEEKQTEKDKWRGLAFDTSDDQQDIARGKGLADPLFQAPMGTGTHNAIMSSYEYISAG 120
E+KQT+ D+WRGLA+DTSDDQQDI RGKG+ D +FQAPMGTGTH+A++SSYEY+S G
Sbjct: 61 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 120
Query: 121 LRQYNLDNNVDGFYIAPAFMDKLVVHIVKNFISLPNIKVPLILGIWGGKGQGKSFQCELV 180
LRQYNLDN +DGFYIAPAFMDKLVVHI KNF++LPNIKVPLILGIWGGKGQGKSFQCELV
Sbjct: 121 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 180
Query: 181 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLLINDLDAGAGRFG 240
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCL INDLDAGAGR G
Sbjct: 181 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 240
Query: 241 GTTQYTVNNQMVNATLMNIADNPTNVQLPGLYNKEENPRVPIIVTGNDFSTLYAPLIRDG 300
GTTQYTVNNQMVNATLMNIADNPTNVQLPG+YNKEEN RVPII TGNDFSTLYAPLIRDG
Sbjct: 241 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 300
Query: 301 RMEKFYWAPTHEDCIGICTGIFRTDGVPKEDIVKLVGTFPGQSIDFFGALRARVYDDEVR 360
RMEKFYWAPT ED IG+C GIFRTD + EDIV LV FPGQSIDFFGALRARVYDDEVR
Sbjct: 301 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 360
Query: 361 KWAAGVGVERIGKSLVNSKEGPPTFDQPKMTLEKLLEYGNMLIKEQENVMRVKLAEKYLK 420
K+ +GVE+IGK LVNS+EGPP F+QP+MT EKL+EYGNML+ EQENV RV+LAE YL
Sbjct: 361 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 420
Query: 421 EAALGDANEDVFQFQTSLGKFNGGRATQQVNITVPEGCADSSAKNRVLTARCDN 472
+AALGDAN D T GK QQVN+ VPEGC D A+N TAR D+
Sbjct: 421 QAALGDANADAIGRGTFYGK-----GAQQVNLPVPEGCTDPVAENFDPTARSDD 467
BLAST of CmaCh02G007820 vs. TAIR 10
Match:
AT2G39730.1 (rubisco activase )
HSP 1 Score: 699.5 bits (1804), Expect = 1.9e-201
Identity = 352/474 (74.26%), Postives = 393/474 (82.91%), Query Frame = 0
Query: 1 MATTVATIGAVNRT--LLNNSNYGGL-VPNSAFLGRRMKNFSSRFTTTSNMVIGNFKIVA 60
MA V+T+GA+NR LN S G + P S FLG+++ SRF ++ G+FK++A
Sbjct: 1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTV-SRFAQSNKKSNGSFKVLA 60
Query: 61 EYDEEKQTEKDKWRGLAFDTSDDQQDIARGKGLADPLFQAPMGTGTHNAIMSSYEYISAG 120
E+KQT+ D+WRGLA+DTSDDQQDI RGKG+ D +FQAPMGTGTH+A++SSYEY+S G
Sbjct: 61 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 120
Query: 121 LRQYNLDNNVDGFYIAPAFMDKLVVHIVKNFISLPNIKVPLILGIWGGKGQGKSFQCELV 180
LRQYNLDN +DGFYIAPAFMDKLVVHI KNF++LPNIKVPLILGIWGGKGQGKSFQCELV
Sbjct: 121 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 180
Query: 181 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLLINDLDAGAGRFG 240
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCL INDLDAGAGR G
Sbjct: 181 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 240
Query: 241 GTTQYTVNNQMVNATLMNIADNPTNVQLPGLYNKEENPRVPIIVTGNDFSTLYAPLIRDG 300
GTTQYTVNNQMVNATLMNIADNPTNVQLPG+YNKEEN RVPII TGNDFSTLYAPLIRDG
Sbjct: 241 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 300
Query: 301 RMEKFYWAPTHEDCIGICTGIFRTDGVPKEDIVKLVGTFPGQSIDFFGALRARVYDDEVR 360
RMEKFYWAPT ED IG+C GIFRTD + EDIV LV FPGQSIDFFGALRARVYDDEVR
Sbjct: 301 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 360
Query: 361 KWAAGVGVERIGKSLVNSKEGPPTFDQPKMTLEKLLEYGNMLIKEQENVMRVKLAEKYLK 420
K+ +GVE+IGK LVNS+EGPP F+QP+MT EKL+EYGNML+ EQENV RV+LAE YL
Sbjct: 361 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 420
Query: 421 EAALGDANEDVFQFQTSLGKFNGGRATQQVNITVPEGCADSSAKNRVLTARCDN 472
+AALGDAN D T GK QQVN+ VPEGC D A+N TAR D+
Sbjct: 421 QAALGDANADAIGRGTFYGK-----GAQQVNLPVPEGCTDPVAENFDPTARSDD 467
BLAST of CmaCh02G007820 vs. TAIR 10
Match:
AT2G39730.2 (rubisco activase )
HSP 1 Score: 676.4 bits (1744), Expect = 1.7e-194
Identity = 336/440 (76.36%), Postives = 374/440 (85.00%), Query Frame = 0
Query: 1 MATTVATIGAVNRT--LLNNSNYGGL-VPNSAFLGRRMKNFSSRFTTTSNMVIGNFKIVA 60
MA V+T+GA+NR LN S G + P S FLG+++ SRF ++ G+FK++A
Sbjct: 1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTV-SRFAQSNKKSNGSFKVLA 60
Query: 61 EYDEEKQTEKDKWRGLAFDTSDDQQDIARGKGLADPLFQAPMGTGTHNAIMSSYEYISAG 120
E+KQT+ D+WRGLA+DTSDDQQDI RGKG+ D +FQAPMGTGTH+A++SSYEY+S G
Sbjct: 61 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 120
Query: 121 LRQYNLDNNVDGFYIAPAFMDKLVVHIVKNFISLPNIKVPLILGIWGGKGQGKSFQCELV 180
LRQYNLDN +DGFYIAPAFMDKLVVHI KNF++LPNIKVPLILGIWGGKGQGKSFQCELV
Sbjct: 121 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 180
Query: 181 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLLINDLDAGAGRFG 240
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCL INDLDAGAGR G
Sbjct: 181 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 240
Query: 241 GTTQYTVNNQMVNATLMNIADNPTNVQLPGLYNKEENPRVPIIVTGNDFSTLYAPLIRDG 300
GTTQYTVNNQMVNATLMNIADNPTNVQLPG+YNKEEN RVPII TGNDFSTLYAPLIRDG
Sbjct: 241 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 300
Query: 301 RMEKFYWAPTHEDCIGICTGIFRTDGVPKEDIVKLVGTFPGQSIDFFGALRARVYDDEVR 360
RMEKFYWAPT ED IG+C GIFRTD + EDIV LV FPGQSIDFFGALRARVYDDEVR
Sbjct: 301 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 360
Query: 361 KWAAGVGVERIGKSLVNSKEGPPTFDQPKMTLEKLLEYGNMLIKEQENVMRVKLAEKYLK 420
K+ +GVE+IGK LVNS+EGPP F+QP+MT EKL+EYGNML+ EQENV RV+LAE YL
Sbjct: 361 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 420
Query: 421 EAALGDANEDVFQFQTSLGK 438
+AALGDAN D T GK
Sbjct: 421 QAALGDANADAIGRGTFYGK 438
BLAST of CmaCh02G007820 vs. TAIR 10
Match:
AT2G39730.3 (rubisco activase )
HSP 1 Score: 676.4 bits (1744), Expect = 1.7e-194
Identity = 336/440 (76.36%), Postives = 374/440 (85.00%), Query Frame = 0
Query: 1 MATTVATIGAVNRT--LLNNSNYGGL-VPNSAFLGRRMKNFSSRFTTTSNMVIGNFKIVA 60
MA V+T+GA+NR LN S G + P S FLG+++ SRF ++ G+FK++A
Sbjct: 1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTV-SRFAQSNKKSNGSFKVLA 60
Query: 61 EYDEEKQTEKDKWRGLAFDTSDDQQDIARGKGLADPLFQAPMGTGTHNAIMSSYEYISAG 120
E+KQT+ D+WRGLA+DTSDDQQDI RGKG+ D +FQAPMGTGTH+A++SSYEY+S G
Sbjct: 61 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 120
Query: 121 LRQYNLDNNVDGFYIAPAFMDKLVVHIVKNFISLPNIKVPLILGIWGGKGQGKSFQCELV 180
LRQYNLDN +DGFYIAPAFMDKLVVHI KNF++LPNIKVPLILGIWGGKGQGKSFQCELV
Sbjct: 121 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 180
Query: 181 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLLINDLDAGAGRFG 240
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCL INDLDAGAGR G
Sbjct: 181 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 240
Query: 241 GTTQYTVNNQMVNATLMNIADNPTNVQLPGLYNKEENPRVPIIVTGNDFSTLYAPLIRDG 300
GTTQYTVNNQMVNATLMNIADNPTNVQLPG+YNKEEN RVPII TGNDFSTLYAPLIRDG
Sbjct: 241 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 300
Query: 301 RMEKFYWAPTHEDCIGICTGIFRTDGVPKEDIVKLVGTFPGQSIDFFGALRARVYDDEVR 360
RMEKFYWAPT ED IG+C GIFRTD + EDIV LV FPGQSIDFFGALRARVYDDEVR
Sbjct: 301 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 360
Query: 361 KWAAGVGVERIGKSLVNSKEGPPTFDQPKMTLEKLLEYGNMLIKEQENVMRVKLAEKYLK 420
K+ +GVE+IGK LVNS+EGPP F+QP+MT EKL+EYGNML+ EQENV RV+LAE YL
Sbjct: 361 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 420
Query: 421 EAALGDANEDVFQFQTSLGK 438
+AALGDAN D T GK
Sbjct: 421 QAALGDANADAIGRGTFYGK 438
BLAST of CmaCh02G007820 vs. TAIR 10
Match:
AT1G73110.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )
HSP 1 Score: 332.0 bits (850), Expect = 8.0e-91
Identity = 166/295 (56.27%), Postives = 221/295 (74.92%), Query Frame = 0
Query: 130 FYIAPAFMDKLVVHIVKNFISLP-NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 189
+YIAP+F+DK+ VHIVKN+++ NIK+PLILGIWGGKGQGK+FQ EL+F MG+ P++M
Sbjct: 136 YYIAPSFLDKVAVHIVKNYLAPSLNIKIPLILGIWGGKGQGKTFQTELIFKTMGVEPVIM 195
Query: 190 SAGELESGNAGEPAKLIRQRYREAADLIK-KGKMCCLLINDLDAGAGRFGGTTQYTVNNQ 249
SAGELES AGEP +LIR RYR A+ +I+ +GKM L+IND+DAG GRF G TQ TVNNQ
Sbjct: 196 SAGELESDRAGEPGRLIRDRYRTASQVIQNQGKMSVLMINDIDAGLGRF-GETQMTVNNQ 255
Query: 250 MVNATLMNIADNPTNVQLPGLYNKEEN-PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 309
+V TLMN+ADNPT V + + + + RVP+IVTGNDFSTLYAPLIR+GRMEKFYW P
Sbjct: 256 IVVGTLMNLADNPTRVSVGQEWREADMVNRVPLIVTGNDFSTLYAPLIREGRMEKFYWQP 315
Query: 310 THEDCIGICTGIFRTDGVPKEDIVKLVGTFPGQSIDFFGALRARVYDDEVRKWA--AGVG 369
T ED + I + ++ DG+ ++D++ +V FP Q++DF+GALR+R YD + KW AG G
Sbjct: 316 TREDIVNIVSRMYEKDGISRKDVISIVDKFPNQALDFYGALRSRTYDRSILKWVDEAG-G 375
Query: 370 VERIGKSLVNSK--EGPPTFDQPKMTLEKLLEYGNMLIKEQENVMRVKLAEKYLK 418
+E +GK L+ K + P F P+ T+E LLE G LI EQ+ +M KL+++Y+K
Sbjct: 376 METLGKVLLRRKKTQEVPQFTAPEQTVEALLESGYSLINEQKLIMETKLSKEYMK 428
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q01587 | 3.7e-218 | 90.75 | Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis s... | [more] |
Q7X9A0 | 5.0e-207 | 75.73 | Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea ... | [more] |
Q40281 | 4.4e-203 | 79.91 | Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus dom... | [more] |
Q7X999 | 2.4e-201 | 79.03 | Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea ... | [more] |
P10896 | 2.7e-200 | 74.26 | Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidops... | [more] |