CmaCh02G006170 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G006170
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RING-type E3 ubiquitin transferase
Location	Cma_Chr02: 3714484 .. 3715925 (-)
RNA-Seq Expression	CmaCh02G006170
Synteny	CmaCh02G006170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAATTCTTTTCACTTCCATTCATGGACATCAAGAGTTCCATTATTCAAGAAAGCTCTTCACCGCTGCAGCCCCCTCCGCCCTCCACAACCCACTCCAATCCATCTCCGGTGGCGGCCCCGACACCAGCTTCGATACCAATGTCGTTATGGTCCTCTCCGTCCTCCTCTGCGCCTTAATCTGCTCCTTAGGCCTCAACTCCATCATCAGATGCGCTTTTAAATGCTCTCGAATTGTCGTCTCCCACGACCACCGTCCTCCCTCTGCCACCACCGCTGTCCCCACCGGAGTTCACAAGAAGGCCATCAAGAGCTTTACTGTTGTTCAATTCTCCCCCGAGCTCAACTTCCCCGGGATGGATAGTGAGTGCATTATTTGCTTGTCGGACTTTGCCGCCGGCGACAAACTCCGGCTGCTCCCTAAGTGTAACCATGGATTTCATGTTAGGTGTATTGATAAGTGGCTCACTTCTCACTCCTCTTGCCCTAAATGTCGTCAGTGTTTAGTTCAAACTTGTCAGAAGATCGCCGGCGTTGGCACCTCCACCTCCACCTCCACCTCCGGTCAACCGCCGTCTCAGCCGCCGCCTCCGGTTTTGAACTTAACACCGGTGGATCACGAAGGTCCGGTACGAAATTTAAGGGTATAATGAAAAATAATAGGGATTAGGAGTAGAGTATGAAATTGTGTATATATATATATATATATATAAATTAAACTTTCTCACAAATTCTAATGTTCTTCAAATTTGTATGGTGTTTAGAAAATTTATAGTGAATTTAATTATAAAATATAGAATAATTATTATGAAAATGGGTTGAGACAAATCTAACAACCAAACAAAATATTTAAAAAAGAAAAAAAGAAAAAAAAAGAAAGAAATAGAAAGGCACTTTGAATGAATGGGAGATGAAGATGAGAGCACTAATACACAAATCATTGTATGGGGACTAAATTAATGGCATCAAAAGGATAATTTTGTACTATTTGTATTGCCTTTGCTTCCCGACTTTGGGGCCACCCAACAATTAACGTTACCCTACACAATCCGACACAACCCCATATTCATCATTCATCGGGATAAATGTAAAATTTACCTCATACGTTTATGTCAAGATTTAATGTATTTTTGTATATCACGTGCATTAAAATACTTCCCGTTATGATATCTATGTACCCATGGTGTTATGTGAGCTTCTTCCCCTCGGTGAGCGTATTTTTAACTTCAAACTTCATCAGCTCTTTAAAGACAATTTTGACCTTGGAATCATCAAGTTTTCATCCATTTGAATCATTTCTATTACATGAATTCATTGCCATGGAGAGTAACTCCTTTATTTCTGGAGATTTCTATGGGTTTTGTGTGGGCTTTGAACTTAGTTGATTTTGTGGGCACAGCTCATCGGATTTGGGGTTTGGGCCAAATGGTGTGAAGGATAA

mRNA sequence

ATGTCAATTCTTTTCACTTCCATTCATGGACATCAAGAGTTCCATTATTCAAGAAAGCTCTTCACCGCTGCAGCCCCCTCCGCCCTCCACAACCCACTCCAATCCATCTCCGGTGGCGGCCCCGACACCAGCTTCGATACCAATGTCGTTATGGTCCTCTCCGTCCTCCTCTGCGCCTTAATCTGCTCCTTAGGCCTCAACTCCATCATCAGATGCGCTTTTAAATGCTCTCGAATTGTCGTCTCCCACGACCACCGTCCTCCCTCTGCCACCACCGCTGTCCCCACCGGAGTTCACAAGAAGGCCATCAAGAGCTTTACTGTTGTTCAATTCTCCCCCGAGCTCAACTTCCCCGGGATGGATAGTGAGTGCATTATTTGCTTGTCGGACTTTGCCGCCGGCGACAAACTCCGGCTGCTCCCTAAGTGTAACCATGGATTTCATGTTAGGTGTATTGATAAGTGGCTCACTTCTCACTCCTCTTGCCCTAAATGTCGTCAGTGTTTAGTTCAAACTTGTCAGAAGATCGCCGGCGTTGGCACCTCCACCTCCACCTCCACCTCCGGTCAACCGCCGTCTCAGCCGCCGCCTCCGGTTTTGAACTTAACACCGGTGGATCACGAAGGTCCGGTACGAAATTTAAGGCTCATCGGATTTGGGGTTTGGGCCAAATGGTGTGAAGGATAA

Coding sequence (CDS)

ATGTCAATTCTTTTCACTTCCATTCATGGACATCAAGAGTTCCATTATTCAAGAAAGCTCTTCACCGCTGCAGCCCCCTCCGCCCTCCACAACCCACTCCAATCCATCTCCGGTGGCGGCCCCGACACCAGCTTCGATACCAATGTCGTTATGGTCCTCTCCGTCCTCCTCTGCGCCTTAATCTGCTCCTTAGGCCTCAACTCCATCATCAGATGCGCTTTTAAATGCTCTCGAATTGTCGTCTCCCACGACCACCGTCCTCCCTCTGCCACCACCGCTGTCCCCACCGGAGTTCACAAGAAGGCCATCAAGAGCTTTACTGTTGTTCAATTCTCCCCCGAGCTCAACTTCCCCGGGATGGATAGTGAGTGCATTATTTGCTTGTCGGACTTTGCCGCCGGCGACAAACTCCGGCTGCTCCCTAAGTGTAACCATGGATTTCATGTTAGGTGTATTGATAAGTGGCTCACTTCTCACTCCTCTTGCCCTAAATGTCGTCAGTGTTTAGTTCAAACTTGTCAGAAGATCGCCGGCGTTGGCACCTCCACCTCCACCTCCACCTCCGGTCAACCGCCGTCTCAGCCGCCGCCTCCGGTTTTGAACTTAACACCGGTGGATCACGAAGGTCCGGTACGAAATTTAAGGCTCATCGGATTTGGGGTTTGGGCCAAATGGTGTGAAGGATAA

Protein sequence

MSILFTSIHGHQEFHYSRKLFTAAAPSALHNPLQSISGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAFKCSRIVVSHDHRPPSATTAVPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGTSTSTSTSGQPPSQPPPPVLNLTPVDHEGPVRNLRLIGFGVWAKWCEG

Homology

[Close]

BLAST of CmaCh02G006170 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.1e-50
Identity = 109/203 (53.69%), Postives = 137/203 (67.49%), Query Frame = 0


Query: 16  YSRKLFTAAAPSALHNPLQSISGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAFK 75
           YSRKL          +P  + S    D +FD NVVMVLSVLLCAL+CSLGLNSIIRCA +
Sbjct: 26  YSRKLLFHTHD---QSPTPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALR 85

Query: 76  CSRIVVSH---DHRPPSATTAVPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFA 135
           CS +V S    D+ P   T    TGV +KA+KSF  V +S ELN PG+D+EC ICLS+F 
Sbjct: 86  CSNLVPSEAGGDNYPVRLTN---TGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFV 145

Query: 136 AGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGTSTSTSTSGQPP 195
           A ++++LLP C+HGFHVRCIDKWL+SHSSCP CR CL+QTC+KIA   + TS+  S QPP
Sbjct: 146 AEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKIADC-SQTSSLNSTQPP 205

Query: 196 SQPPPPVLNLTPVDHEGPVRNLR 216
                 +L + P++ E  +R  R
Sbjct: 206 QD--SIILQIAPLEPERWIRWFR 219

[Close]

BLAST of CmaCh02G006170 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.6e-43
Identity = 94/198 (47.47%), Postives = 127/198 (64.14%), Query Frame = 0


Query: 11  HQEFHYSRKLFTAAAPSALHNPLQSISGGGPDTSFDTNVVMVLSVLLCALICSLGLNSII 70
           H  F ++ +   A APS L     ++SG         NV+M+LS+L+C +IC LGL+ II
Sbjct: 29  HNPFDHNTQRAFAVAPSPLITHENNLSG---------NVMMLLSILICGIICCLGLHYII 88

Query: 71  RCAFKCS-RIVVSHDHRPPSATTAVPT-GVHKKAIKSFTVVQFSPELNFPGMDSECIICL 130
           RCA + S R ++S      S+T      G+ KKA++ F VV +SPE+N PG+D EC+ICL
Sbjct: 89  RCALRRSTRFMISEPVPSLSSTRGSSNKGIKKKALRMFPVVSYSPEMNLPGLDEECVICL 148

Query: 131 SDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGTSTSTSTS 190
           SDF +G++LRLLPKCNHGFHVRCIDKWL  H +CPKCR CLV+TCQKI G   S + S +
Sbjct: 149 SDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLVETCQKILG-DFSQADSVT 208

Query: 191 GQPPSQPPPPVLNLTPVD 207
            +P       ++ L P +
Sbjct: 209 AEPTEIVIVTIVPLEPTE 216

[Close]

BLAST of CmaCh02G006170 vs. ExPASy Swiss-Prot
Match: Q94BY6 (RING-H2 finger protein ATL75 OS=Arabidopsis thaliana OX=3702 GN=ATL75 PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.1e-43
Identity = 97/212 (45.75%), Postives = 133/212 (62.74%), Query Frame = 0


Query: 11  HQEFHYSRKLFTAAAPSALHNPLQSISGGGPDTSFDTNVVMVLSVLLCALICSLGLNSII 70
           H  F ++ +   A APS L     ++SG         NV+M+LSVL+C +IC LGL+ II
Sbjct: 30  HNPFDHNTQRAFAVAPSPLITHENNLSG---------NVLMLLSVLICGIICCLGLHYII 89

Query: 71  RCAF-KCSRIVVSHDHRPPSATTAVP-----TGVHKKAIKSFTVVQFSPELNFPGMDSEC 130
           RCAF + S  ++S     P A  + P      G++KKA++ F VV +SPE+N PG+  EC
Sbjct: 90  RCAFRRTSSFMISE----PIAGLSTPCGSSNKGINKKALRMFPVVSYSPEMNLPGLGEEC 149

Query: 131 IICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGTSTS 190
           +ICLSDF +G+++R+LPKC+HGFHVRCIDKWL  H +CPKCR CLV+TCQKI G      
Sbjct: 150 VICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCRHCLVETCQKILG-----D 209

Query: 191 TSTSGQPPSQPPPPVL-NLTPVDHEGPVRNLR 216
            S + Q  + P   V+  + P++ EG V  LR
Sbjct: 210 FSQADQVAATPTASVIVRIAPLEPEGRVNILR 223

[Close]

BLAST of CmaCh02G006170 vs. ExPASy Swiss-Prot
Match: Q6NML0 (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.8e-43
Identity = 96/211 (45.50%), Postives = 130/211 (61.61%), Query Frame = 0


Query: 11  HQEFHYSRKLFTAAAPSALHNPLQSISGGGPDTSFDTNVVMVLSVLLCALICSLGLNSII 70
           H  F ++     A APS L     ++ G         NV+M+LSVL+C +IC LGL+ II
Sbjct: 29  HDPFDHNSLRVFAVAPSPLITHENNLKG---------NVLMLLSVLICGIICCLGLHYII 88

Query: 71  RCAF-KCSRIVVSHDHRPPSATTAVP-----TGVHKKAIKSFTVVQFSPELNFPGMDSEC 130
           RCAF + SR ++S     P ++ + P      G+ KKA++ F VV +S E+N PG+  EC
Sbjct: 89  RCAFRRSSRFMISE----PISSLSTPRSSSNKGIKKKALRMFPVVSYSREMNLPGIGEEC 148

Query: 131 IICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGTSTS 190
           +ICLSDF +G++LRLLPKCNHGFHVRCIDKWL  H +CPKCR CLV+TCQKI G   S +
Sbjct: 149 VICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCRHCLVETCQKILG-DFSQA 208

Query: 191 TSTSGQPPSQPPPPVLNLTPVDHEGPVRNLR 216
            S +  P       ++ + P++ EG V   R
Sbjct: 209 DSMASTPTES---VIVRIDPLEPEGRVNTFR 222

[Close]

BLAST of CmaCh02G006170 vs. ExPASy Swiss-Prot
Match: Q9LS99 (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.8e-42
Identity = 81/132 (61.36%), Postives = 102/132 (77.27%), Query Frame = 0


Query: 48  NVVMVLSVLLCALICSLGLNSIIRCAFKCSR-IVVSHDHRPPSA--TTAVPTGVHKKAIK 107
           NV+M+LS+LLC +ICSLGL+ IIRCAF  SR  ++S     PS    ++V  G+ KKA+K
Sbjct: 51  NVLMLLSILLCGIICSLGLHYIIRCAFIRSRSFMISDPISIPSTPRDSSVNKGIKKKALK 110

Query: 108 SFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPK 167
              VV +SPE+N PG+  EC+ICLSDF AG++LR+LPKCNHGFH+RCIDKWLT H +CPK
Sbjct: 111 MLPVVNYSPEINLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPK 170

Query: 168 CRQCLVQTCQKI 177
           CR CLV TCQK+
Sbjct: 171 CRHCLVDTCQKV 182

[Close]

BLAST of CmaCh02G006170 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 201.4 bits (511), Expect = 7.5e-52
Identity = 109/203 (53.69%), Postives = 137/203 (67.49%), Query Frame = 0


Query: 16  YSRKLFTAAAPSALHNPLQSISGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAFK 75
           YSRKL          +P  + S    D +FD NVVMVLSVLLCAL+CSLGLNSIIRCA +
Sbjct: 26  YSRKLLFHTHD---QSPTPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALR 85

Query: 76  CSRIVVSH---DHRPPSATTAVPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFA 135
           CS +V S    D+ P   T    TGV +KA+KSF  V +S ELN PG+D+EC ICLS+F 
Sbjct: 86  CSNLVPSEAGGDNYPVRLTN---TGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFV 145

Query: 136 AGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGTSTSTSTSGQPP 195
           A ++++LLP C+HGFHVRCIDKWL+SHSSCP CR CL+QTC+KIA   + TS+  S QPP
Sbjct: 146 AEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKIADC-SQTSSLNSTQPP 205

Query: 196 SQPPPPVLNLTPVDHEGPVRNLR 216
                 +L + P++ E  +R  R
Sbjct: 206 QD--SIILQIAPLEPERWIRWFR 219

[Close]

BLAST of CmaCh02G006170 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 177.6 bits (449), Expect = 1.2e-44
Identity = 94/198 (47.47%), Postives = 127/198 (64.14%), Query Frame = 0


Query: 11  HQEFHYSRKLFTAAAPSALHNPLQSISGGGPDTSFDTNVVMVLSVLLCALICSLGLNSII 70
           H  F ++ +   A APS L     ++SG         NV+M+LS+L+C +IC LGL+ II
Sbjct: 29  HNPFDHNTQRAFAVAPSPLITHENNLSG---------NVMMLLSILICGIICCLGLHYII 88

Query: 71  RCAFKCS-RIVVSHDHRPPSATTAVPT-GVHKKAIKSFTVVQFSPELNFPGMDSECIICL 130
           RCA + S R ++S      S+T      G+ KKA++ F VV +SPE+N PG+D EC+ICL
Sbjct: 89  RCALRRSTRFMISEPVPSLSSTRGSSNKGIKKKALRMFPVVSYSPEMNLPGLDEECVICL 148

Query: 131 SDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGTSTSTSTS 190
           SDF +G++LRLLPKCNHGFHVRCIDKWL  H +CPKCR CLV+TCQKI G   S + S +
Sbjct: 149 SDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLVETCQKILG-DFSQADSVT 208

Query: 191 GQPPSQPPPPVLNLTPVD 207
            +P       ++ L P +
Sbjct: 209 AEPTEIVIVTIVPLEPTE 216

[Close]

BLAST of CmaCh02G006170 vs. TAIR 10
Match: AT1G49200.1 (RING/U-box superfamily protein )

HSP 1 Score: 177.2 bits (448), Expect = 1.5e-44
Identity = 97/212 (45.75%), Postives = 133/212 (62.74%), Query Frame = 0


Query: 11  HQEFHYSRKLFTAAAPSALHNPLQSISGGGPDTSFDTNVVMVLSVLLCALICSLGLNSII 70
           H  F ++ +   A APS L     ++SG         NV+M+LSVL+C +IC LGL+ II
Sbjct: 30  HNPFDHNTQRAFAVAPSPLITHENNLSG---------NVLMLLSVLICGIICCLGLHYII 89

Query: 71  RCAF-KCSRIVVSHDHRPPSATTAVP-----TGVHKKAIKSFTVVQFSPELNFPGMDSEC 130
           RCAF + S  ++S     P A  + P      G++KKA++ F VV +SPE+N PG+  EC
Sbjct: 90  RCAFRRTSSFMISE----PIAGLSTPCGSSNKGINKKALRMFPVVSYSPEMNLPGLGEEC 149

Query: 131 IICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGTSTS 190
           +ICLSDF +G+++R+LPKC+HGFHVRCIDKWL  H +CPKCR CLV+TCQKI G      
Sbjct: 150 VICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCRHCLVETCQKILG-----D 209

Query: 191 TSTSGQPPSQPPPPVL-NLTPVDHEGPVRNLR 216
            S + Q  + P   V+  + P++ EG V  LR
Sbjct: 210 FSQADQVAATPTASVIVRIAPLEPEGRVNILR 223

[Close]

BLAST of CmaCh02G006170 vs. TAIR 10
Match: AT1G49210.1 (RING/U-box superfamily protein )

HSP 1 Score: 176.0 bits (445), Expect = 3.4e-44
Identity = 96/211 (45.50%), Postives = 130/211 (61.61%), Query Frame = 0


Query: 11  HQEFHYSRKLFTAAAPSALHNPLQSISGGGPDTSFDTNVVMVLSVLLCALICSLGLNSII 70
           H  F ++     A APS L     ++ G         NV+M+LSVL+C +IC LGL+ II
Sbjct: 29  HDPFDHNSLRVFAVAPSPLITHENNLKG---------NVLMLLSVLICGIICCLGLHYII 88

Query: 71  RCAF-KCSRIVVSHDHRPPSATTAVP-----TGVHKKAIKSFTVVQFSPELNFPGMDSEC 130
           RCAF + SR ++S     P ++ + P      G+ KKA++ F VV +S E+N PG+  EC
Sbjct: 89  RCAFRRSSRFMISE----PISSLSTPRSSSNKGIKKKALRMFPVVSYSREMNLPGIGEEC 148

Query: 131 IICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIAGVGTSTS 190
           +ICLSDF +G++LRLLPKCNHGFHVRCIDKWL  H +CPKCR CLV+TCQKI G   S +
Sbjct: 149 VICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCRHCLVETCQKILG-DFSQA 208

Query: 191 TSTSGQPPSQPPPPVLNLTPVDHEGPVRNLR 216
            S +  P       ++ + P++ EG V   R
Sbjct: 209 DSMASTPTES---VIVRIDPLEPEGRVNTFR 222

[Close]

BLAST of CmaCh02G006170 vs. TAIR 10
Match: AT3G18773.1 (RING/U-box superfamily protein )

HSP 1 Score: 174.1 bits (440), Expect = 1.3e-43
Identity = 81/132 (61.36%), Postives = 102/132 (77.27%), Query Frame = 0


Query: 48  NVVMVLSVLLCALICSLGLNSIIRCAFKCSR-IVVSHDHRPPSA--TTAVPTGVHKKAIK 107
           NV+M+LS+LLC +ICSLGL+ IIRCAF  SR  ++S     PS    ++V  G+ KKA+K
Sbjct: 51  NVLMLLSILLCGIICSLGLHYIIRCAFIRSRSFMISDPISIPSTPRDSSVNKGIKKKALK 110

Query: 108 SFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPK 167
              VV +SPE+N PG+  EC+ICLSDF AG++LR+LPKCNHGFH+RCIDKWLT H +CPK
Sbjct: 111 MLPVVNYSPEINLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPK 170

Query: 168 CRQCLVQTCQKI 177
           CR CLV TCQK+
Sbjct: 171 CRHCLVDTCQKV 182

The following BLAST results are available for this feature:

BLAST of CmaCh02G006170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQG7	1.1e-50	53.69	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
P0C034	1.6e-43	47.47	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]
Q94BY6	2.1e-43	45.75	RING-H2 finger protein ATL75 OS=Arabidopsis thaliana OX=3702 GN=ATL75 PE=2 SV=1	[more]
Q6NML0	4.8e-43	45.50	E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 ...	[more]
Q9LS99	1.8e-42	61.36	RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1	[more]

BLAST of CmaCh02G006170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49230.1	7.5e-52	53.69	RING/U-box superfamily protein	[more]
AT1G49220.1	1.2e-44	47.47	RING/U-box superfamily protein	[more]
AT1G49200.1	1.5e-44	45.75	RING/U-box superfamily protein	[more]
AT1G49210.1	3.4e-44	45.50	RING/U-box superfamily protein	[more]
AT3G18773.1	1.3e-43	61.36	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 124..165 e-value: 4.2E-7 score: 39.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 123..166 e-value: 1.2E-13 score: 51.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 124..166 score: 12.090947
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 83..171 e-value: 4.2E-21 score: 76.4
None	No IPR available	PANTHER	PTHR46905:SF7	RING-H2 FINGER PROTEIN ATL78	coord: 12..215
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 123..166 e-value: 5.12128E-15 score: 64.6387
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 102..171
IPR044602	RING-H2 finger protein ATL10/ATL75-79	PANTHER	PTHR46905	RING-H2 FINGER PROTEIN ATL78	coord: 12..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G006170.1	CmaCh02G006170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity