CmaCh02G004920 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G004920
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	transcription factor MYB44-like
Location	Cma_Chr02: 2616147 .. 2616953 (-)
RNA-Seq Expression	CmaCh02G004920
Synteny	CmaCh02G004920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAACAACTCGACCGGATCAAGGGCCCATGGAGTCCCGAAGAGGACGAAGCGCTTCAGAGATTGGTTCAGAAACACGGCCCTCGCAACTGGTCCTTGATTAGTAAGTCCATTCCTGGCCGTTCCGGCAAGTCCTGCCGCCTCCGATGGTGCAATCAGCTCTCCCCGCAGGTCGAGCACCGACCGTTCACGCAGGAGGAAGACGAGACGATCATTAACGCTCAAGCTCTGTACGGAAATAAGTGGGCGGCCATCGCTAGACTCCTCTCTGGTCGGACCGATAACGCCATTAAAAACCACTGGAACTCGACCTTGAAACGAAAGTGCTCATCCATGGCTGACGAAAGCGGCGGTTGTTACACAAGCTCACCGCCGTTGAAGAGGTCTGTTTCTGCAGGTCACAGTCCGTCTGGATCCGATGTTAGCGATTCTGGATTCTTCCCCGCCGTTTCGTCTCCGCACGTTTACCGACCGGTAGCTAGAACTAGAGGCGTCGTACCTCCAGTCGAAACGGTGTCGTCTTCGAACGATGAACCAGAAACATTATTGTCGTTGTCGCTTCCCGGTGCGGAGTCGTCTGAGAGAGGCATTTGGATGCTGCCGGCGACAGGTGAGAAAGAGGAAAGAAGTAGTAATAGATTGGGGTATTTTAGCCCGGAATTAATGGCGGTGATGCAAGAGATGATTAGAAAGGAGGTGAGAAATTACATGGATGGATTAATGGAACAGAACGTTAGCGGTGGGGTTTGTTTCCAGGAGGCCGCCGCCGGTGGATTTAGAAACGTCGTCGGATTGATCGACTGA

mRNA sequence

ATGGCTAAACAACTCGACCGGATCAAGGGCCCATGGAGTCCCGAAGAGGACGAAGCGCTTCAGAGATTGGTTCAGAAACACGGCCCTCGCAACTGGTCCTTGATTAGTAAGTCCATTCCTGGCCGTTCCGGCAAGTCCTGCCGCCTCCGATGGTGCAATCAGCTCTCCCCGCAGGTCGAGCACCGACCGTTCACGCAGGAGGAAGACGAGACGATCATTAACGCTCAAGCTCTGTACGGAAATAAGTGGGCGGCCATCGCTAGACTCCTCTCTGGTCGGACCGATAACGCCATTAAAAACCACTGGAACTCGACCTTGAAACGAAAGTGCTCATCCATGGCTGACGAAAGCGGCGGTTGTTACACAAGCTCACCGCCGTTGAAGAGGTCTGTTTCTGCAGGTCACAGTCCGTCTGGATCCGATGTTAGCGATTCTGGATTCTTCCCCGCCGTTTCGTCTCCGCACGTTTACCGACCGGTAGCTAGAACTAGAGGCGTCGTACCTCCAGTCGAAACGGTGTCGTCTTCGAACGATGAACCAGAAACATTATTGTCGTTGTCGCTTCCCGGTGCGGAGTCGTCTGAGAGAGGCATTTGGATGCTGCCGGCGACAGGTGAGAAAGAGGAAAGAAGTAGTAATAGATTGGGGTATTTTAGCCCGGAATTAATGGCGGTGATGCAAGAGATGATTAGAAAGGAGGTGAGAAATTACATGGATGGATTAATGGAACAGAACGTTAGCGGTGGGGTTTGTTTCCAGGAGGCCGCCGCCGGTGGATTTAGAAACGTCGTCGGATTGATCGACTGA

Coding sequence (CDS)

ATGGCTAAACAACTCGACCGGATCAAGGGCCCATGGAGTCCCGAAGAGGACGAAGCGCTTCAGAGATTGGTTCAGAAACACGGCCCTCGCAACTGGTCCTTGATTAGTAAGTCCATTCCTGGCCGTTCCGGCAAGTCCTGCCGCCTCCGATGGTGCAATCAGCTCTCCCCGCAGGTCGAGCACCGACCGTTCACGCAGGAGGAAGACGAGACGATCATTAACGCTCAAGCTCTGTACGGAAATAAGTGGGCGGCCATCGCTAGACTCCTCTCTGGTCGGACCGATAACGCCATTAAAAACCACTGGAACTCGACCTTGAAACGAAAGTGCTCATCCATGGCTGACGAAAGCGGCGGTTGTTACACAAGCTCACCGCCGTTGAAGAGGTCTGTTTCTGCAGGTCACAGTCCGTCTGGATCCGATGTTAGCGATTCTGGATTCTTCCCCGCCGTTTCGTCTCCGCACGTTTACCGACCGGTAGCTAGAACTAGAGGCGTCGTACCTCCAGTCGAAACGGTGTCGTCTTCGAACGATGAACCAGAAACATTATTGTCGTTGTCGCTTCCCGGTGCGGAGTCGTCTGAGAGAGGCATTTGGATGCTGCCGGCGACAGGTGAGAAAGAGGAAAGAAGTAGTAATAGATTGGGGTATTTTAGCCCGGAATTAATGGCGGTGATGCAAGAGATGATTAGAAAGGAGGTGAGAAATTACATGGATGGATTAATGGAACAGAACGTTAGCGGTGGGGTTTGTTTCCAGGAGGCCGCCGCCGGTGGATTTAGAAACGTCGTCGGATTGATCGACTGA

Protein sequence

MAKQLDRIKGPWSPEEDEALQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTQEEDETIINAQALYGNKWAAIARLLSGRTDNAIKNHWNSTLKRKCSSMADESGGCYTSSPPLKRSVSAGHSPSGSDVSDSGFFPAVSSPHVYRPVARTRGVVPPVETVSSSNDEPETLLSLSLPGAESSERGIWMLPATGEKEERSSNRLGYFSPELMAVMQEMIRKEVRNYMDGLMEQNVSGGVCFQEAAAGGFRNVVGLID

Homology

[Close]

BLAST of CmaCh02G004920 vs. ExPASy Swiss-Prot
Match: Q9FDW1 (Transcription factor MYB44 OS=Arabidopsis thaliana OX=3702 GN=MYB44 PE=1 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 6.0e-69
Identity = 154/284 (54.23%), Postives = 177/284 (62.32%), Query Frame = 0


Query: 6   DRIKGPWSPEEDEALQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFT 65
           DRIKGPWSPEEDE L+RLV K+GPRNW++ISKSIPGRSGKSCRLRWCNQLSPQVEHRPF+
Sbjct: 3   DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFS 62

Query: 66  QEEDETIINAQALYGNKWAAIARLLSGRTDNAIKNHWNSTLKRKCSSMADESGGCYTSSP 125
            EEDETI  A A +GNKWA IARLL+GRTDNA+KNHWNSTLKRKC               
Sbjct: 63  AEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCGGYDHRGYDGSEDHR 122

Query: 126 PLKRSVSAGH------------SPSGSDVSDSGFFPAVSSPHVYRPVARTRGVV--PPVE 185
           P+KRSVSAG             SP+GSDVSDS   P + S  +++PV R   VV   P+E
Sbjct: 123 PVKRSVSAGSPPVVTGLYMSPGSPTGSDVSDSSTIPILPSVELFKPVPRPGAVVLPLPIE 182

Query: 186 TVSSSNDEPETLLSLSLPGAESSERGIWMLPATGEKEERSS----NRLGYFSP------- 245
           T SSS+D+P T LSLSLPGA+ SE       +T      SS    N    F P       
Sbjct: 183 T-SSSSDDPPTSLSLSLPGADVSEESNRSHESTNINNTTSSRHNHNNTVSFMPFSGGFRG 242

Query: 246 --------------ELMAVMQEMIRKEVRNYMDGLMEQNVSGGV 251
                         E MAV+QEMI+ EVR+YM  +   N  G V
Sbjct: 243 AIEEMGKSFPGNGGEFMAVVQEMIKAEVRSYMTEMQRNNGGGFV 285

[Close]

BLAST of CmaCh02G004920 vs. ExPASy Swiss-Prot
Match: O23160 (Transcription factor MYB73 OS=Arabidopsis thaliana OX=3702 GN=MYB73 PE=1 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 7.3e-67
Identity = 151/287 (52.61%), Postives = 174/287 (60.63%), Query Frame = 0


Query: 3   KQLDRIKGPWSPEEDEALQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHR 62
           K ++RIKGPWSPEED+ LQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP+VEHR
Sbjct: 7   KNMERIKGPWSPEEDDLLQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHR 66

Query: 63  PFTQEEDETIINAQALYGNKWAAIARLLSGRTDNAIKNHWNSTLKRKCS---SMADESG- 122
            F+QEEDETII A A +GNKWA I+RLL+GRTDNAIKNHWNSTLKRKCS      D  G 
Sbjct: 67  AFSQEEDETIIRAHARFGNKWATISRLLNGRTDNAIKNHWNSTLKRKCSVEGQSCDFGGN 126

Query: 123 ----GCYTSSPPLKRSVSAG-----------HSPSGSDVSDSGFFPAVSSPHVYRPVART 182
               G      PLKR+ S G            SPSGSDVS+     +    HV++P  R+
Sbjct: 127 GGYDGNLGEEQPLKRTASGGGGVSTGLYMSPGSPSGSDVSEQ----SSGGAHVFKPTVRS 186

Query: 183 RGVVPPVETVSSSNDEPETLLSLSLPGAESSER-----------------GIWMLPATGE 242
                   T SSS ++P T LSLSLP  + + R                    + P   E
Sbjct: 187 E------VTASSSGEDPPTYLSLSLPWTDETVRVNEPVQLNQNTVMDGGYTAELFPVRKE 246

Query: 243 -----KEERSSNRLGYFSPELMAVMQEMIRKEVRNYMDGLMEQNVSG 249
                +EE +    G F  E M V+QEMIR EVR+YM  L   NV G
Sbjct: 247 EQVEVEEEEAKGISGGFGGEFMTVVQEMIRTEVRSYMADLQRGNVGG 283

[Close]

BLAST of CmaCh02G004920 vs. ExPASy Swiss-Prot
Match: Q9SN12 (Transcription factor MYB77 OS=Arabidopsis thaliana OX=3702 GN=MYB77 PE=1 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 6.2e-66
Identity = 154/297 (51.85%), Postives = 190/297 (63.97%), Query Frame = 0


Query: 6   DRIKGPWSPEEDEALQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFT 65
           DR+KGPWS EEDE L+R+V+K+GPRNWS ISKSIPGRSGKSCRLRWCNQLSP+VEHRPF+
Sbjct: 3   DRVKGPWSQEEDEQLRRMVEKYGPRNWSAISKSIPGRSGKSCRLRWCNQLSPEVEHRPFS 62

Query: 66  QEEDETIINAQALYGNKWAAIARLLSGRTDNAIKNHWNSTLKRKCSSMADESGGCYTSS- 125
            EEDETI+ A+A +GNKWA IARLL+GRTDNA+KNHWNSTLKRKCS     +    T   
Sbjct: 63  PEEDETIVTARAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCSGGVAVTTVTETEED 122

Query: 126 ---PPLKRSVS--------------AGHSPSGSDVSDSGFFPAVSSP--HVYRPVARTRG 185
              P  +RSVS              +  SP+G DVSDS   P+ SSP   +++P+  + G
Sbjct: 123 QDRPKKRRSVSFDSAFAPVDTGLYMSPESPNGIDVSDSSTIPSPSSPVAQLFKPMPISGG 182

Query: 186 --VVP---PVETVSSSNDEPETLLSLSLPGAE------SSERGIWMLPATGEK-----EE 245
             VVP   PVE +SSS+++P T LSLSLPGAE      ++     M P    +     EE
Sbjct: 183 FTVVPQPLPVE-MSSSSEDPPTSLSLSLPGAENTSSSHNNNNNALMFPRFESQMKINVEE 242

Query: 246 RSSNRLGYFSPELMAVMQEMIRKEVRNYMDGLMEQNVSGGV----CFQEAAAGGFRN 263
           R   R G    E M V+QEMI+ EVR+YM  +  Q  SGG      ++    GGFR+
Sbjct: 243 RGEGRRG----EFMTVVQEMIKAEVRSYMAEM--QKTSGGFVVGGLYESGGNGGFRD 292

[Close]

BLAST of CmaCh02G004920 vs. ExPASy Swiss-Prot
Match: O04192 (Transcription factor MYB25 OS=Arabidopsis thaliana OX=3702 GN=MYB25 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.2e-39
Identity = 71/103 (68.93%), Postives = 88/103 (85.44%), Query Frame = 0


Query: 7   RIKGPWSPEEDEALQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTQ 66
           ++KGPW PE+DEAL RLV+  GPRNW+LIS+ IPGRSGKSCRLRWCNQL P ++ +PF+ 
Sbjct: 48  KVKGPWLPEQDEALTRLVKMCGPRNWNLISRGIPGRSGKSCRLRWCNQLDPILKRKPFSD 107

Query: 67  EEDETIINAQALYGNKWAAIARLLSGRTDNAIKNHWNSTLKRK 110
           EE+  I++AQA+ GNKW+ IA+LL GRTDNAIKNHWNS L+RK
Sbjct: 108 EEEHMIMSAQAVLGNKWSVIAKLLPGRTDNAIKNHWNSNLRRK 150

[Close]

BLAST of CmaCh02G004920 vs. ExPASy Swiss-Prot
Match: Q42575 (Transcription factor MYB1 OS=Arabidopsis thaliana OX=3702 GN=MYB1 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.2e-38
Identity = 70/104 (67.31%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 6   DRIKGPWSPEEDEALQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFT 65
           DR+KGPWS EED+ L  LV++ G RNWS I++SIPGRSGKSCRLRWCNQL+P +    FT
Sbjct: 52  DRVKGPWSKEEDDVLSELVKRLGARNWSFIARSIPGRSGKSCRLRWCNQLNPNLIRNSFT 111

Query: 66  QEEDETIINAQALYGNKWAAIARLLSGRTDNAIKNHWNSTLKRK 110
           + ED+ II A A++GNKWA IA+LL GRTDNAIKNHWNS L+R+
Sbjct: 112 EVEDQAIIAAHAIHGNKWAVIAKLLPGRTDNAIKNHWNSALRRR 155

[Close]

BLAST of CmaCh02G004920 vs. TAIR 10
Match: AT2G23290.1 (myb domain protein 70 )

HSP 1 Score: 265.8 bits (678), Expect = 3.8e-71
Identity = 155/299 (51.84%), Postives = 177/299 (59.20%), Query Frame = 0


Query: 3   KQLDRIKGPWSPEEDEALQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHR 62
           K++DRIKGPWSPEED+ LQ LVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP+VEHR
Sbjct: 7   KEMDRIKGPWSPEEDDLLQSLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHR 66

Query: 63  PFTQEEDETIINAQALYGNKWAAIARLLSGRTDNAIKNHWNSTLKRKCS---------SM 122
            FT EED+TII A A +GNKWA IARLL+GRTDNAIKNHWNSTLKRKCS           
Sbjct: 67  GFTAEEDDTIILAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSGGGGGGEEGQS 126

Query: 123 ADESG-----GCYTSSPPLKRSVSAGH--------SPSGSDVSD-----SGFFPAVSSPH 182
            D  G     G  T   PLKR  S G         SP+GSDVS+         P  SS H
Sbjct: 127 CDFGGNGGYDGNLTDEKPLKRRASGGGGVVVVTALSPTGSDVSEQSQSSGSVLPVSSSCH 186

Query: 183 VYRPVARTRGVVPPVETVSSSNDEPETLLSLSLPGAESSERGIWMLPATGEKEERSSNRL 242
           V++P AR  GVV    +      +P T L LSLP    S     + P   E+EE     +
Sbjct: 187 VFKPTARAGGVVIESSSPEEEEKDPMTCLRLSLPWVNESTTPPELFPVKREEEEEKEREI 246

Query: 243 GYFSPELMAVMQEMIRKEVRNYMDGLMEQNVSG-----GVCFQEAAAG---GFRNVVGL 267
                + M V+QEMI+ EVR+YM  L   N  G       C  +   G   GFR  +GL
Sbjct: 247 SGLGGDFMTVVQEMIKTEVRSYMADLQLGNGGGAGGGASSCMVQGTNGRNVGFREFIGL 305

[Close]

BLAST of CmaCh02G004920 vs. TAIR 10
Match: AT5G67300.1 (myb domain protein r1 )

HSP 1 Score: 262.3 bits (669), Expect = 4.2e-70
Identity = 154/284 (54.23%), Postives = 177/284 (62.32%), Query Frame = 0


Query: 6   DRIKGPWSPEEDEALQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFT 65
           DRIKGPWSPEEDE L+RLV K+GPRNW++ISKSIPGRSGKSCRLRWCNQLSPQVEHRPF+
Sbjct: 3   DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFS 62

Query: 66  QEEDETIINAQALYGNKWAAIARLLSGRTDNAIKNHWNSTLKRKCSSMADESGGCYTSSP 125
            EEDETI  A A +GNKWA IARLL+GRTDNA+KNHWNSTLKRKC               
Sbjct: 63  AEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCGGYDHRGYDGSEDHR 122

Query: 126 PLKRSVSAGH------------SPSGSDVSDSGFFPAVSSPHVYRPVARTRGVV--PPVE 185
           P+KRSVSAG             SP+GSDVSDS   P + S  +++PV R   VV   P+E
Sbjct: 123 PVKRSVSAGSPPVVTGLYMSPGSPTGSDVSDSSTIPILPSVELFKPVPRPGAVVLPLPIE 182

Query: 186 TVSSSNDEPETLLSLSLPGAESSERGIWMLPATGEKEERSS----NRLGYFSP------- 245
           T SSS+D+P T LSLSLPGA+ SE       +T      SS    N    F P       
Sbjct: 183 T-SSSSDDPPTSLSLSLPGADVSEESNRSHESTNINNTTSSRHNHNNTVSFMPFSGGFRG 242

Query: 246 --------------ELMAVMQEMIRKEVRNYMDGLMEQNVSGGV 251
                         E MAV+QEMI+ EVR+YM  +   N  G V
Sbjct: 243 AIEEMGKSFPGNGGEFMAVVQEMIKAEVRSYMTEMQRNNGGGFV 285

[Close]

BLAST of CmaCh02G004920 vs. TAIR 10
Match: AT4G37260.1 (myb domain protein 73 )

HSP 1 Score: 255.4 bits (651), Expect = 5.2e-68
Identity = 151/287 (52.61%), Postives = 174/287 (60.63%), Query Frame = 0


Query: 3   KQLDRIKGPWSPEEDEALQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHR 62
           K ++RIKGPWSPEED+ LQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP+VEHR
Sbjct: 7   KNMERIKGPWSPEEDDLLQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHR 66

Query: 63  PFTQEEDETIINAQALYGNKWAAIARLLSGRTDNAIKNHWNSTLKRKCS---SMADESG- 122
            F+QEEDETII A A +GNKWA I+RLL+GRTDNAIKNHWNSTLKRKCS      D  G 
Sbjct: 67  AFSQEEDETIIRAHARFGNKWATISRLLNGRTDNAIKNHWNSTLKRKCSVEGQSCDFGGN 126

Query: 123 ----GCYTSSPPLKRSVSAG-----------HSPSGSDVSDSGFFPAVSSPHVYRPVART 182
               G      PLKR+ S G            SPSGSDVS+     +    HV++P  R+
Sbjct: 127 GGYDGNLGEEQPLKRTASGGGGVSTGLYMSPGSPSGSDVSEQ----SSGGAHVFKPTVRS 186

Query: 183 RGVVPPVETVSSSNDEPETLLSLSLPGAESSER-----------------GIWMLPATGE 242
                   T SSS ++P T LSLSLP  + + R                    + P   E
Sbjct: 187 E------VTASSSGEDPPTYLSLSLPWTDETVRVNEPVQLNQNTVMDGGYTAELFPVRKE 246

Query: 243 -----KEERSSNRLGYFSPELMAVMQEMIRKEVRNYMDGLMEQNVSG 249
                +EE +    G F  E M V+QEMIR EVR+YM  L   NV G
Sbjct: 247 EQVEVEEEEAKGISGGFGGEFMTVVQEMIRTEVRSYMADLQRGNVGG 283

[Close]

BLAST of CmaCh02G004920 vs. TAIR 10
Match: AT3G50060.1 (myb domain protein 77 )

HSP 1 Score: 252.3 bits (643), Expect = 4.4e-67
Identity = 154/297 (51.85%), Postives = 190/297 (63.97%), Query Frame = 0


Query: 6   DRIKGPWSPEEDEALQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFT 65
           DR+KGPWS EEDE L+R+V+K+GPRNWS ISKSIPGRSGKSCRLRWCNQLSP+VEHRPF+
Sbjct: 3   DRVKGPWSQEEDEQLRRMVEKYGPRNWSAISKSIPGRSGKSCRLRWCNQLSPEVEHRPFS 62

Query: 66  QEEDETIINAQALYGNKWAAIARLLSGRTDNAIKNHWNSTLKRKCSSMADESGGCYTSS- 125
            EEDETI+ A+A +GNKWA IARLL+GRTDNA+KNHWNSTLKRKCS     +    T   
Sbjct: 63  PEEDETIVTARAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCSGGVAVTTVTETEED 122

Query: 126 ---PPLKRSVS--------------AGHSPSGSDVSDSGFFPAVSSP--HVYRPVARTRG 185
              P  +RSVS              +  SP+G DVSDS   P+ SSP   +++P+  + G
Sbjct: 123 QDRPKKRRSVSFDSAFAPVDTGLYMSPESPNGIDVSDSSTIPSPSSPVAQLFKPMPISGG 182

Query: 186 --VVP---PVETVSSSNDEPETLLSLSLPGAE------SSERGIWMLPATGEK-----EE 245
             VVP   PVE +SSS+++P T LSLSLPGAE      ++     M P    +     EE
Sbjct: 183 FTVVPQPLPVE-MSSSSEDPPTSLSLSLPGAENTSSSHNNNNNALMFPRFESQMKINVEE 242

Query: 246 RSSNRLGYFSPELMAVMQEMIRKEVRNYMDGLMEQNVSGGV----CFQEAAAGGFRN 263
           R   R G    E M V+QEMI+ EVR+YM  +  Q  SGG      ++    GGFR+
Sbjct: 243 RGEGRRG----EFMTVVQEMIKAEVRSYMAEM--QKTSGGFVVGGLYESGGNGGFRD 292

[Close]

BLAST of CmaCh02G004920 vs. TAIR 10
Match: AT3G55730.1 (myb domain protein 109 )

HSP 1 Score: 167.5 bits (423), Expect = 1.4e-41
Identity = 73/107 (68.22%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 7   RIKGPWSPEEDEALQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTQ 66
           ++KGPWS EED  L +LV+K GPRNWSLI++ IPGRSGKSCRLRWCNQL P ++ +PF+ 
Sbjct: 54  KVKGPWSTEEDAVLTKLVRKLGPRNWSLIARGIPGRSGKSCRLRWCNQLDPCLKRKPFSD 113

Query: 67  EEDETIINAQALYGNKWAAIARLLSGRTDNAIKNHWNSTLKRKCSSM 114
           EED  II+A A++GNKWA IA+LL+GRTDNAIKNHWNSTL+RK + +
Sbjct: 114 EEDRMIISAHAVHGNKWAVIAKLLTGRTDNAIKNHWNSTLRRKYADL 160

The following BLAST results are available for this feature:

BLAST of CmaCh02G004920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FDW1	6.0e-69	54.23	Transcription factor MYB44 OS=Arabidopsis thaliana OX=3702 GN=MYB44 PE=1 SV=1	[more]
O23160	7.3e-67	52.61	Transcription factor MYB73 OS=Arabidopsis thaliana OX=3702 GN=MYB73 PE=1 SV=1	[more]
Q9SN12	6.2e-66	51.85	Transcription factor MYB77 OS=Arabidopsis thaliana OX=3702 GN=MYB77 PE=1 SV=1	[more]
O04192	2.2e-39	68.93	Transcription factor MYB25 OS=Arabidopsis thaliana OX=3702 GN=MYB25 PE=2 SV=1	[more]
Q42575	4.2e-38	67.31	Transcription factor MYB1 OS=Arabidopsis thaliana OX=3702 GN=MYB1 PE=2 SV=1	[more]

BLAST of CmaCh02G004920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G23290.1	3.8e-71	51.84	myb domain protein 70	[more]
AT5G67300.1	4.2e-70	54.23	myb domain protein r1	[more]
AT4G37260.1	5.2e-68	52.61	myb domain protein 73	[more]
AT3G50060.1	4.4e-67	51.85	myb domain protein 77	[more]
AT3G55730.1	1.4e-41	68.22	myb domain protein 109	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 60..108 e-value: 9.7E-15 score: 65.0 coord: 8..57 e-value: 8.1E-18 score: 75.2
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 4..55 score: 12.113141
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 56..106 score: 9.314552
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 63..106 e-value: 1.62666E-12 score: 58.741
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 11..53 e-value: 1.5783E-17 score: 72.223
None	No IPR available	PFAM	PF13921	Myb_DNA-bind_6	coord: 12..70 e-value: 1.9E-18 score: 66.4
None	No IPR available	GENE3D	1.10.10.60		coord: 62..122 e-value: 1.3E-20 score: 75.2
None	No IPR available	GENE3D	1.10.10.60		coord: 8..60 e-value: 6.6E-24 score: 85.6
None	No IPR available	PANTHER	PTHR45614	MYB PROTEIN-RELATED	coord: 4..209
None	No IPR available	PANTHER	PTHR45614:SF107	TRANSCRIPTION FACTOR MYB44-LIKE	coord: 4..209
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 6..59 score: 26.429129
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 61..110 score: 23.154362
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 6..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G004920.1	CmaCh02G004920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding