CmaCh02G004580 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G004580
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	la-related protein 6C-like
Location	Cma_Chr02: 2398563 .. 2401462 (-)
RNA-Seq Expression	CmaCh02G004580
Synteny	CmaCh02G004580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTGGTGAGAAATGGCAAAATGGAGAGCCACTTGGGCGAAATTCCCACCTCGAAATCCTCAGTCAAACTCAAATCCAACGGCCCTTTGTCACAAAATCCTACCCTCCTTTCAATCCACCCCCAGATGCATATATTTGGGCGCGAAATCTGCGTCGATTTGCAGATTTCAGTTACTAAACTTCAGGCTAAATCTTACGCGCGCGCGCACACACACACACACTGAGATTTCCATAACCCTTATGCGTTCCAAACTCTGCTTCGGATTAACGCAAGGGGAAGAGGGGAATCGGAGAAGATATGGCGGAAGCGAATCCGGAAAAGAAGGTGAATTCGAACCCTGAAATGGAGGTCGTCAAACAAGCTGTTAATGGCGATGCTGGTGTTGGTAGTAGTACCAGCAATGGTGATCTTTCCTTCAAATTCAATGCTCAAGCGCCTGAGTTCTTCCCTAGATCGCAAACTCAGATGCCTGTTTCCGGCTATTTTCATCCCTATTTCCATTTTCTTGGTGGGGCTCCTGCTACTTCCGACTGGTTCTTTATTGGCGATCAAGAACCCACCTATTTGATCCCTAATCCCACCATTCCCCTCCCTAATTTCTCTAAGAATCCCCGTTCTGATGATATTCACCAAAAACTCATCAAACAGGTACCTTGTTTCATTCTGTTCTTGATTCCTTTTTGTCTCGATTTCTCTTATATTTCATTGTTTGATTCCACAATCCTGCTTCCTGTTCTGTGTTCATCTGAATGATCAATCACCAAACCATGATTATATGTATGCTTCTTGCTTTTTGGTAAATATATGATAGTCCTTTAGAACTCTGTATTTGGATGATCAATGTGCCATGCTCGTAACTAGTTCATGTTATCATTTTGACTCTCACTTCAAGATTATCTATAATAATGTTCTTAAGGTACACTTCTTTTCCATTAGTTTTCTCCTTGGATTCCTTCTTAACGTGTTTGATCTCTCTTTCTTTATGCTTTGAACTTAAAGGGTTTGATATGCATAAGTTCTTCTCTATCACTATAATCTCATATATGTTGTTCATATTTGGAACATCAGTTCAGCATCTTATGAATGATTTCAATTTTACAGGTAGAATATCAGTTCAGTGACATGAGTCTTCTTGCAAATGAATCTCTTGCAAAAAGCATTAGCAAAGATCCTGATGGTTACGGTATAATCTTTGGAAGTCTATCACCTGGATGTGTTAATTCAAATTTTCGATATGTTTTTAACTGAATTATGATTTGTCTTTCTTTCGTTTCCCTTTATGAAGTTCCAATTTCTGTTATTTCGTCCACCAAAAAAGTGAAGTCCCTCTCAACCAACAACAATTTGATAGTTCAAGCTCTCCGCTCCTCTTCAAAGCTTGTAAGTTCTTAAGTTAAGCACTCAATTTTCCACTCTTTCTGGAAAAATAAGAACTCTTCATTTATTGTGATTCATATCTGATCTTCTGAAGGTTGTTAGTGCTGATGGGAAGAAAGTTAAGCGTAAGCATCCGTTTACGGACAAGGACAAAGAGGAATTGCTGGTAAGATCAACCATTGTACAAATGATGCAGAACATTTACCTTTAGCTGAGTAAGGTGTAATGTTTTTGTTCATTGATTTGCAGTCCCGCACGGTCGTTGTGGAGAATTTGCCCGACAATCACTCACACCACAACCTCGAGAAGATATTTAGCGTCATTGGGAGGTAGTTTCATTAACATCATCACTCAGTCTTATTCCTTGTTCTATTAGATGTTTAAACTGTCTTCACTGAGCTTCATTCATTAATGATATCTGACCAGTGTGAAGACTGTCCGAATCTGCCATCCCCCAGAGTCGAATCCGTGCTGCTCTAAAGGTGAATTGTTTATCAGTAACAAGGTATTGTGAATCATCCTTTACTATAATGTATATCCAAGGCACTTCTCCTTAAAATCCTTTTCTCATTGTTACTTCATTTGTTTGAAGCTTCATGCACTTGTGGAATACGAGACTGCAGAGTTGGCTGAAAGAGCGGTATGCATCTATTGTACGCTATAGGTGATCGAGTTACTTGTATTCAATCTTTTTATTGTCTTTTCCACGTTTTTTGTGCCTGCTAGGCTGAGAAGTTAAATGATGAGAGAAACTGGAGGAAAGGGCTCCGAGTAAGGCTATTGCTCAGACGCTCGGTAAGTGTAATAAGATGATGTGTCTGCATTTTCATTATTTACGTGCTCCTGCTTAGTTCAACTCTAATTATTATTTCTGGATAGCCGAAATCGGTTCTGAAGACTCGAAAGTCCGATTTTGATTGTATTCTGGATGAAGATGATTCACCATCTACTGTATCCACTGAACAAGAGTCCTCTCTGCCAAATATCACTGAACTGATAAACGATTGCAGTGTACGTATTTCGTTTCTAAAACTTTTTCGTCCTTGATTAAATGATTTGTAATTCTCAAATGACATGAAATATCTGGTTTACTAGTCCGAGGAGAACTCTACATCAGCTAAGAAGGGTTGGGGACGAGGCCGTGGGAAGGGTCGTGGACGAATTCATAGCCATCTCGATCGTAGCTGTAGCTTGCCGGTGGCAGCAATGCAATCAAGTAGTCAGGTTGTTTGTGAAGCATCTTCCAAACTCACTACGAAGAGTCCGAGAATGCCTGATGGGACGAAAGGGTTCACCATGGGACGAGGCAAGCCATTGAGCTCTAAACCTGTATTTTGAATGAATAGAGAAATGTAGGGAAACCTTTCTTTGGTTGTTGTTAAGTAGGGTGGAAAAAACTGACTATTTTGCTGCTACCTATGCTTGTGTCATTTTTGGTAATAATGGATATGTTTGATAGGATTTTGGTTTATATAATGTGGCGCTGGCCATCATTCTATTTTTCTAGCCCTTATATTTTTC

mRNA sequence

TTCTTGGTGAGAAATGGCAAAATGGAGAGCCACTTGGGCGAAATTCCCACCTCGAAATCCTCAGTCAAACTCAAATCCAACGGCCCTTTGTCACAAAATCCTACCCTCCTTTCAATCCACCCCCAGATGCATATATTTGGGCGCGAAATCTGCGTCGATTTGCAGATTTCAGTTACTAAACTTCAGGCTAAATCTTACGCGCGCGCGCACACACACACACACTGAGATTTCCATAACCCTTATGCGTTCCAAACTCTGCTTCGGATTAACGCAAGGGGAAGAGGGGAATCGGAGAAGATATGGCGGAAGCGAATCCGGAAAAGAAGGTGAATTCGAACCCTGAAATGGAGGTCGTCAAACAAGCTGTTAATGGCGATGCTGGTGTTGGTAGTAGTACCAGCAATGGTGATCTTTCCTTCAAATTCAATGCTCAAGCGCCTGAGTTCTTCCCTAGATCGCAAACTCAGATGCCTGTTTCCGGCTATTTTCATCCCTATTTCCATTTTCTTGGTGGGGCTCCTGCTACTTCCGACTGGTTCTTTATTGGCGATCAAGAACCCACCTATTTGATCCCTAATCCCACCATTCCCCTCCCTAATTTCTCTAAGAATCCCCGTTCTGATGATATTCACCAAAAACTCATCAAACAGGTAGAATATCAGTTCAGTGACATGAGTCTTCTTGCAAATGAATCTCTTGCAAAAAGCATTAGCAAAGATCCTGATGGTTACGTTCCAATTTCTGTTATTTCGTCCACCAAAAAAGTGAAGTCCCTCTCAACCAACAACAATTTGATAGTTCAAGCTCTCCGCTCCTCTTCAAAGCTTGTTGTTAGTGCTGATGGGAAGAAAGTTAAGCGTAAGCATCCGTTTACGGACAAGGACAAAGAGGAATTGCTGTCCCGCACGGTCGTTGTGGAGAATTTGCCCGACAATCACTCACACCACAACCTCGAGAAGATATTTAGCGTCATTGGGAGTGTGAAGACTGTCCGAATCTGCCATCCCCCAGAGTCGAATCCGTGCTGCTCTAAAGGTGAATTGTTTATCAGTAACAAGCTTCATGCACTTGTGGAATACGAGACTGCAGAGTTGGCTGAAAGAGCGGCTGAGAAGTTAAATGATGAGAGAAACTGGAGGAAAGGGCTCCGAGTAAGGCTATTGCTCAGACGCTCGCCGAAATCGGTTCTGAAGACTCGAAAGTCCGATTTTGATTGTATTCTGGATGAAGATGATTCACCATCTACTGTATCCACTGAACAAGAGTCCTCTCTGCCAAATATCACTGAACTGATAAACGATTGCAGTTCCGAGGAGAACTCTACATCAGCTAAGAAGGGTTGGGGACGAGGCCGTGGGAAGGGTCGTGGACGAATTCATAGCCATCTCGATCGTAGCTGTAGCTTGCCGGTGGCAGCAATGCAATCAAGTAGTCAGGTTGTTTGTGAAGCATCTTCCAAACTCACTACGAAGAGTCCGAGAATGCCTGATGGGACGAAAGGGTTCACCATGGGACGAGGCAAGCCATTGAGCTCTAAACCTGTATTTTGAATGAATAGAGAAATGTAGGGAAACCTTTCTTTGGTTGTTGTTAAGTAGGGTGGAAAAAACTGACTATTTTGCTGCTACCTATGCTTGTGTCATTTTTGGTAATAATGGATATGTTTGATAGGATTTTGGTTTATATAATGTGGCGCTGGCCATCATTCTATTTTTCTAGCCCTTATATTTTTC

Coding sequence (CDS)

ATGGCGGAAGCGAATCCGGAAAAGAAGGTGAATTCGAACCCTGAAATGGAGGTCGTCAAACAAGCTGTTAATGGCGATGCTGGTGTTGGTAGTAGTACCAGCAATGGTGATCTTTCCTTCAAATTCAATGCTCAAGCGCCTGAGTTCTTCCCTAGATCGCAAACTCAGATGCCTGTTTCCGGCTATTTTCATCCCTATTTCCATTTTCTTGGTGGGGCTCCTGCTACTTCCGACTGGTTCTTTATTGGCGATCAAGAACCCACCTATTTGATCCCTAATCCCACCATTCCCCTCCCTAATTTCTCTAAGAATCCCCGTTCTGATGATATTCACCAAAAACTCATCAAACAGGTAGAATATCAGTTCAGTGACATGAGTCTTCTTGCAAATGAATCTCTTGCAAAAAGCATTAGCAAAGATCCTGATGGTTACGTTCCAATTTCTGTTATTTCGTCCACCAAAAAAGTGAAGTCCCTCTCAACCAACAACAATTTGATAGTTCAAGCTCTCCGCTCCTCTTCAAAGCTTGTTGTTAGTGCTGATGGGAAGAAAGTTAAGCGTAAGCATCCGTTTACGGACAAGGACAAAGAGGAATTGCTGTCCCGCACGGTCGTTGTGGAGAATTTGCCCGACAATCACTCACACCACAACCTCGAGAAGATATTTAGCGTCATTGGGAGTGTGAAGACTGTCCGAATCTGCCATCCCCCAGAGTCGAATCCGTGCTGCTCTAAAGGTGAATTGTTTATCAGTAACAAGCTTCATGCACTTGTGGAATACGAGACTGCAGAGTTGGCTGAAAGAGCGGCTGAGAAGTTAAATGATGAGAGAAACTGGAGGAAAGGGCTCCGAGTAAGGCTATTGCTCAGACGCTCGCCGAAATCGGTTCTGAAGACTCGAAAGTCCGATTTTGATTGTATTCTGGATGAAGATGATTCACCATCTACTGTATCCACTGAACAAGAGTCCTCTCTGCCAAATATCACTGAACTGATAAACGATTGCAGTTCCGAGGAGAACTCTACATCAGCTAAGAAGGGTTGGGGACGAGGCCGTGGGAAGGGTCGTGGACGAATTCATAGCCATCTCGATCGTAGCTGTAGCTTGCCGGTGGCAGCAATGCAATCAAGTAGTCAGGTTGTTTGTGAAGCATCTTCCAAACTCACTACGAAGAGTCCGAGAATGCCTGATGGGACGAAAGGGTTCACCATGGGACGAGGCAAGCCATTGAGCTCTAAACCTGTATTTTGA

Protein sequence

MAEANPEKKVNSNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVSGYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLIKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICHPPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKGRGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPVF

Homology

[Close]

BLAST of CmaCh02G004580 vs. ExPASy Swiss-Prot
Match: Q9LHL3 (La-related protein 6C OS=Arabidopsis thaliana OX=3702 GN=LARP6C PE=3 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 1.6e-105
Identity = 227/438 (51.83%), Postives = 281/438 (64.16%), Query Frame = 0


Query: 26  DAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQ------MPVSGYFHPYFHFLGG------- 85
           D G GSS +    +FKFNAQAPEF PRS T        PVSGYF+P FH+ GG       
Sbjct: 20  DGGGGSSGAQA-TAFKFNAQAPEFVPRSHTTAPAPQVSPVSGYFYPCFHYNGGCIGGCGG 79

Query: 86  ----------APATSDWFFIGDQEPT------------YLIPNPTIPLP------NFSKN 145
                        +SDW ++G  +PT            + I NP +  P      + SKN
Sbjct: 80  GVCGGGGTGVGTQSSDWIYVGGGDPTAQHQHVHDPAAAFYISNPAVQFPASQNSSSSSKN 139

Query: 146 PRSDDIHQKLIKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNN 205
             SDD+  K++KQVEYQF+DMSLLANES++K ISKDP+GYVP+S I+STKK+K+L++N++
Sbjct: 140 LLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHH 199

Query: 206 LIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSV 265
           L+  ALRSSSKLVVS DGKKVKR   FTD+D+EEL  RTVV ENLPD+HS+ NLEKIF V
Sbjct: 200 LVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAENLPDDHSYQNLEKIFGV 259

Query: 266 IGSVKTVRICHPPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLR 325
           +G+VK +RICHPPESN    KG+  +SNK+HAL+EY+   +A++A EKLNDERNWRKGLR
Sbjct: 260 VGNVKAIRICHPPESNSSRPKGDFLMSNKIHALIEYDNTVIADKAVEKLNDERNWRKGLR 319

Query: 326 VRLLLRRSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSA 385
           VRLLLR SPKSVLK R+ +FD IL +D+ PS  S E    L ++TE   D   ++N+   
Sbjct: 320 VRLLLRCSPKSVLKNRR-NFDGILIDDELPSYESGEDSPRL-HLTESQLDNDGDDNNVGG 379

Query: 386 KKGWGRGRGKGRGR-------------IHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTK 410
              WG+GRGKGRGR                 L  S  +P      SS      S K  TK
Sbjct: 380 L--WGKGRGKGRGRSPRSYAVGGGGRSFGIGLGVSLGIPSLGSHESS------SPKTATK 439

[Close]

BLAST of CmaCh02G004580 vs. ExPASy Swiss-Prot
Match: O80567 (La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2)

HSP 1 Score: 215.7 bits (548), Expect = 9.9e-55
Identity = 138/361 (38.23%), Postives = 196/361 (54.29%), Query Frame = 0


Query: 102 SKNPRSDDIHQKLIKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLST 161
           SK    +D  QK++ QVEY FSD++L   + L + I KDP+GYVPI V++S KK+K++  
Sbjct: 185 SKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVIN 244

Query: 162 NNNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKI 221
           NN+ +   L++S+KL VS DGKKV+R  P T+   EEL SR +V ENLP++H + NL KI
Sbjct: 245 NNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKI 304

Query: 222 FSVIGSVKTVRICH--------PPESNPCCSKGELFISNKLHALVEYETAELAERAAEKL 281
           FS +GSVK +R C         PP +           SNK+HA VEYE  ELAERA  +L
Sbjct: 305 FSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHAFVEYEIVELAERAVTEL 364

Query: 282 NDERNWRKGLRVRLLLR---RSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITE 341
           ++  NWR GL+VRL+L+   + PK      +   D  ++ ++  +T S +Q      I +
Sbjct: 365 SEAGNWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTSEQQP-----IEK 424

Query: 342 LINDCSSE----------------ENSTSAKKGWGRGRGKGRGRIHSHLDRSCSLPVAAM 401
             +DCS E                E +   +KG  RGRGKGRGR   H +++ +   +  
Sbjct: 425 QSDDCSGEWDTHMQEQPIGEDQGNEKAAGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHN 484

Query: 402 QSSS-------------QVVCEASS------------KLTTKSPRMPDGTKGFTMGRGKP 411
           Q+ +             QV  + S+            K     PRMPDGT+GF+MGRGKP
Sbjct: 485 QNHNHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGKQQPPGPRMPDGTRGFSMGRGKP 540

[Close]

BLAST of CmaCh02G004580 vs. ExPASy Swiss-Prot
Match: Q94A38 (La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.0e-43
Identity = 120/313 (38.34%), Postives = 173/313 (55.27%), Query Frame = 0


Query: 108 DDIHQKLIKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIV 167
           D+++QK+I+QVEY FSD +L  ++ L  ++ ++  G+VPIS I++  K+K L+ ++ LIV
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 168 QALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGS 227
            AL+ SS LVVSAD KKVKR  P  +    ++   TV+VENLP++HS+ N+ +IF   GS
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPEIRDPKIF--TVLVENLPEDHSNENIREIFGKAGS 220

Query: 228 VKTVRICHP--PESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRV 287
           +K+V IC P   E +    K E FI  +LHA VEYET E AE+AA  LN+E++WR GLRV
Sbjct: 221 IKSVSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRV 280

Query: 288 RLL--------LRRSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSS 347
           +LL         RR  +  +   K     + D+        T +  +   +    N    
Sbjct: 281 KLLEQAAGKFAQRRPARREVDKEKDTTGRVHDQTGGEKNKKTREHQN-HRLHHSDNPADD 340

Query: 348 EENSTSAKKGWGRGRGKGRGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPD 407
           +  +    K   +GR  G+GR  +H   +      A  SS               PRMPD
Sbjct: 341 DGGNHQKDKNGNKGRVVGQGRRQNHQGGNGIGHGTASSSSHPNYHPVEVSKRPPGPRMPD 400

Query: 408 GTKGFTMGRGKPL 411
           GT+GFTMGRGK +
Sbjct: 401 GTRGFTMGRGKAI 410

[Close]

BLAST of CmaCh02G004580 vs. ExPASy Swiss-Prot
Match: Q05CL8 (La-related protein 7 OS=Mus musculus OX=10090 GN=Larp7 PE=1 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-18
Identity = 62/173 (35.84%), Postives = 96/173 (55.49%), Query Frame = 0


Query: 103 KNPRSDDIHQKLIKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTN 162
           K  R   +   + KQV++ F D +L  ++ L + I K  DGYV IS++ S  K+K L+T+
Sbjct: 21  KRSRVKQVLADIAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTD 80

Query: 163 NNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIF 222
             LI +AL+SSS + +  +G +++RK P  ++ K+E   RTV VE LP N +H  +E++F
Sbjct: 81  GKLIARALKSSSVVELDLEGTRIRRKKPLGERPKDE-EERTVYVELLPKNVTHSWIERVF 140

Query: 223 SVIGSVKTVRICHPPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLND 276
              G+V  + I H   +             K  A VE+ET E A +A E LN+
Sbjct: 141 GKCGNVVYISIPHYKSTG----------DPKGFAFVEFETKEQAAKAIEFLNN 182

[Close]

BLAST of CmaCh02G004580 vs. ExPASy Swiss-Prot
Match: Q5XI01 (La-related protein 7 OS=Rattus norvegicus OX=10116 GN=Larp7 PE=1 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 2.0e-18
Identity = 62/173 (35.84%), Postives = 95/173 (54.91%), Query Frame = 0


Query: 103 KNPRSDDIHQKLIKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTN 162
           K  R   +   + KQV++ F D +L  +  L + I K  DGYV IS++ S  K+K L+T+
Sbjct: 22  KRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTD 81

Query: 163 NNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIF 222
             LI +AL+SSS + +  +G +++RK P  ++ K+E   RTV VE LP N +H  +E++F
Sbjct: 82  GKLIARALKSSSVVELDLEGTRIRRKKPLGERPKDE-EERTVYVELLPKNVTHSWIERVF 141

Query: 223 SVIGSVKTVRICHPPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLND 276
              G+V  + I H   +             K  A VE+ET E A +A E LN+
Sbjct: 142 GKCGNVVYISIPHYKSTG----------DPKGFAFVEFETKEQAAKAIEFLNN 183

[Close]

BLAST of CmaCh02G004580 vs. TAIR 10
Match: AT3G19090.1 (RNA-binding protein )

HSP 1 Score: 384.4 bits (986), Expect = 1.1e-106
Identity = 227/438 (51.83%), Postives = 281/438 (64.16%), Query Frame = 0


Query: 26  DAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQ------MPVSGYFHPYFHFLGG------- 85
           D G GSS +    +FKFNAQAPEF PRS T        PVSGYF+P FH+ GG       
Sbjct: 20  DGGGGSSGAQA-TAFKFNAQAPEFVPRSHTTAPAPQVSPVSGYFYPCFHYNGGCIGGCGG 79

Query: 86  ----------APATSDWFFIGDQEPT------------YLIPNPTIPLP------NFSKN 145
                        +SDW ++G  +PT            + I NP +  P      + SKN
Sbjct: 80  GVCGGGGTGVGTQSSDWIYVGGGDPTAQHQHVHDPAAAFYISNPAVQFPASQNSSSSSKN 139

Query: 146 PRSDDIHQKLIKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNN 205
             SDD+  K++KQVEYQF+DMSLLANES++K ISKDP+GYVP+S I+STKK+K+L++N++
Sbjct: 140 LLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHH 199

Query: 206 LIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSV 265
           L+  ALRSSSKLVVS DGKKVKR   FTD+D+EEL  RTVV ENLPD+HS+ NLEKIF V
Sbjct: 200 LVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAENLPDDHSYQNLEKIFGV 259

Query: 266 IGSVKTVRICHPPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLR 325
           +G+VK +RICHPPESN    KG+  +SNK+HAL+EY+   +A++A EKLNDERNWRKGLR
Sbjct: 260 VGNVKAIRICHPPESNSSRPKGDFLMSNKIHALIEYDNTVIADKAVEKLNDERNWRKGLR 319

Query: 326 VRLLLRRSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSA 385
           VRLLLR SPKSVLK R+ +FD IL +D+ PS  S E    L ++TE   D   ++N+   
Sbjct: 320 VRLLLRCSPKSVLKNRR-NFDGILIDDELPSYESGEDSPRL-HLTESQLDNDGDDNNVGG 379

Query: 386 KKGWGRGRGKGRGR-------------IHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTK 410
              WG+GRGKGRGR                 L  S  +P      SS      S K  TK
Sbjct: 380 L--WGKGRGKGRGRSPRSYAVGGGGRSFGIGLGVSLGIPSLGSHESS------SPKTATK 439

[Close]

BLAST of CmaCh02G004580 vs. TAIR 10
Match: AT2G43970.1 (RNA-binding protein )

HSP 1 Score: 215.7 bits (548), Expect = 7.1e-56
Identity = 138/361 (38.23%), Postives = 196/361 (54.29%), Query Frame = 0


Query: 102 SKNPRSDDIHQKLIKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLST 161
           SK    +D  QK++ QVEY FSD++L   + L + I KDP+GYVPI V++S KK+K++  
Sbjct: 185 SKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVIN 244

Query: 162 NNNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKI 221
           NN+ +   L++S+KL VS DGKKV+R  P T+   EEL SR +V ENLP++H + NL KI
Sbjct: 245 NNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKI 304

Query: 222 FSVIGSVKTVRICH--------PPESNPCCSKGELFISNKLHALVEYETAELAERAAEKL 281
           FS +GSVK +R C         PP +           SNK+HA VEYE  ELAERA  +L
Sbjct: 305 FSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHAFVEYEIVELAERAVTEL 364

Query: 282 NDERNWRKGLRVRLLLR---RSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITE 341
           ++  NWR GL+VRL+L+   + PK      +   D  ++ ++  +T S +Q      I +
Sbjct: 365 SEAGNWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTSEQQP-----IEK 424

Query: 342 LINDCSSE----------------ENSTSAKKGWGRGRGKGRGRIHSHLDRSCSLPVAAM 401
             +DCS E                E +   +KG  RGRGKGRGR   H +++ +   +  
Sbjct: 425 QSDDCSGEWDTHMQEQPIGEDQGNEKAAGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHN 484

Query: 402 QSSS-------------QVVCEASS------------KLTTKSPRMPDGTKGFTMGRGKP 411
           Q+ +             QV  + S+            K     PRMPDGT+GF+MGRGKP
Sbjct: 485 QNHNHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGKQQPPGPRMPDGTRGFSMGRGKP 540

[Close]

BLAST of CmaCh02G004580 vs. TAIR 10
Match: AT2G43970.2 (RNA-binding protein )

HSP 1 Score: 184.9 bits (468), Expect = 1.3e-46
Identity = 125/353 (35.41%), Postives = 182/353 (51.56%), Query Frame = 0


Query: 102 SKNPRSDDIHQKLIKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLST 161
           SK    +D  QK++ QVEY FSD++L   + L + I KDP+GYVPI V++S KK+K++  
Sbjct: 185 SKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVIN 244

Query: 162 NNNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKI 221
           NN+ +   L++S+KL VS DGKKV+R  P T+   EEL SR +V ENLP++H + NL KI
Sbjct: 245 NNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKI 304

Query: 222 FSVIGSVKTVRICHPPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRK 281
           FS +GSVK +R C P  +           +     L   +  EL+E          NWR 
Sbjct: 305 FSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVTELSEAG--------NWRS 364

Query: 282 GLRVRLLLR---RSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSE 341
           GL+VRL+L+   + PK      +   D  ++ ++  +T S +Q      I +  +DCS E
Sbjct: 365 GLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTSEQQP-----IEKQSDDCSGE 424

Query: 342 ----------------ENSTSAKKGWGRGRGKGRGRIHSHLDRSCSLPVAAMQSSS---- 401
                           E +   +KG  RGRGKGRGR   H +++ +   +  Q+ +    
Sbjct: 425 WDTHMQEQPIGEDQGNEKAAGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHNQNHNHNGR 484

Query: 402 ---------QVVCEASS------------KLTTKSPRMPDGTKGFTMGRGKPL 411
                    QV  + S+            K     PRMPDGT+GF+MGRGKP+
Sbjct: 485 GNHHHHHHHQVGTQPSNNPMNNMEQPGMGKQQPPGPRMPDGTRGFSMGRGKPV 524

[Close]

BLAST of CmaCh02G004580 vs. TAIR 10
Match: AT5G46250.1 (RNA-binding protein )

HSP 1 Score: 179.1 bits (453), Expect = 7.3e-45
Identity = 120/313 (38.34%), Postives = 173/313 (55.27%), Query Frame = 0


Query: 108 DDIHQKLIKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIV 167
           D+++QK+I+QVEY FSD +L  ++ L  ++ ++  G+VPIS I++  K+K L+ ++ LIV
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 168 QALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGS 227
            AL+ SS LVVSAD KKVKR  P  +    ++   TV+VENLP++HS+ N+ +IF   GS
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPEIRDPKIF--TVLVENLPEDHSNENIREIFGKAGS 220

Query: 228 VKTVRICHP--PESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRV 287
           +K+V IC P   E +    K E FI  +LHA VEYET E AE+AA  LN+E++WR GLRV
Sbjct: 221 IKSVSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRV 280

Query: 288 RLL--------LRRSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSS 347
           +LL         RR  +  +   K     + D+        T +  +   +    N    
Sbjct: 281 KLLEQAAGKFAQRRPARREVDKEKDTTGRVHDQTGGEKNKKTREHQN-HRLHHSDNPADD 340

Query: 348 EENSTSAKKGWGRGRGKGRGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPD 407
           +  +    K   +GR  G+GR  +H   +      A  SS               PRMPD
Sbjct: 341 DGGNHQKDKNGNKGRVVGQGRRQNHQGGNGIGHGTASSSSHPNYHPVEVSKRPPGPRMPD 400

Query: 408 GTKGFTMGRGKPL 411
           GT+GFTMGRGK +
Sbjct: 401 GTRGFTMGRGKAI 410

[Close]

BLAST of CmaCh02G004580 vs. TAIR 10
Match: AT5G46250.2 (RNA-binding protein )

HSP 1 Score: 159.1 bits (401), Expect = 7.8e-39
Identity = 90/189 (47.62%), Postives = 130/189 (68.78%), Query Frame = 0


Query: 108 DDIHQKLIKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIV 167
           D+++QK+I+QVEY FSD +L  ++ L  ++ ++  G+VPIS I++  K+K L+ ++ LIV
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 168 QALRSSSKLVVSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGS 227
            AL+ SS LVVSAD KKVKR  P  +    ++   TV+VENLP++HS+ N+ +IF   GS
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPEIRDPKIF--TVLVENLPEDHSNENIREIFGKAGS 220

Query: 228 VKTVRICHP--PESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRV 287
           +K+V IC P   E +    K E FI  +LHA VEYET E AE+AA  LN+E++WR GLRV
Sbjct: 221 IKSVSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRV 280

Query: 288 RLLLRRSPK 295
           +LL + + K
Sbjct: 281 KLLEQAAGK 287

The following BLAST results are available for this feature:

BLAST of CmaCh02G004580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHL3	1.6e-105	51.83	La-related protein 6C OS=Arabidopsis thaliana OX=3702 GN=LARP6C PE=3 SV=1	[more]
O80567	9.9e-55	38.23	La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2	[more]
Q94A38	1.0e-43	38.34	La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1	[more]
Q05CL8	1.5e-18	35.84	La-related protein 7 OS=Mus musculus OX=10090 GN=Larp7 PE=1 SV=2	[more]
Q5XI01	2.0e-18	35.84	La-related protein 7 OS=Rattus norvegicus OX=10116 GN=Larp7 PE=1 SV=2	[more]

BLAST of CmaCh02G004580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19090.1	1.1e-106	51.83	RNA-binding protein	[more]
AT2G43970.1	7.1e-56	38.23	RNA-binding protein	[more]
AT2G43970.2	1.3e-46	35.41	RNA-binding protein	[more]
AT5G46250.1	7.3e-45	38.34	RNA-binding protein	[more]
AT5G46250.2	7.8e-39	47.62	RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002344	Lupus La protein	PRINTS	PR00302	LUPUSLA	coord: 143..158 score: 28.41 coord: 196..212 score: 24.06 coord: 117..134 score: 38.89 coord: 174..187 score: 35.06
IPR006630	La-type HTH domain	SMART	SM00715	la	coord: 108..188 e-value: 8.5E-36 score: 134.9
IPR006630	La-type HTH domain	PFAM	PF05383	La	coord: 114..171 e-value: 1.2E-15 score: 57.3
IPR006630	La-type HTH domain	PROSITE	PS50961	HTH_LA	coord: 104..195 score: 23.558769
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 203..286 e-value: 0.0017 score: 27.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 204..275 e-value: 1.3E-6 score: 28.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 202..292 score: 10.803629
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 106..193 e-value: 3.5E-24 score: 86.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 194..295 e-value: 1.1E-12 score: 50.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 384..416
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 335..357
None	No IPR available	PANTHER	PTHR22792:SF62	LA-RELATED PROTEIN 6C	coord: 19..411
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 19..411
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 188..295
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 106..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G004580.1	CmaCh02G004580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005844	polysome
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding