Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAATCCTTCTTACTAATGCTCTCAACCCTCCTTCATTTCCACAACTACCTAGATCCCACCATTTCCCTCCTCCCCTCCACTCCCTCCTCCGCCTCCTCCCCTTCCTCCGCCTCCCTCAACTCCCCCACCTCCCTCCTCTCCTCTTCCTCCGCCGCACCTCTCCTCTTCTTCACCATCGCCTCCGTTCTCTCCTTCATCGCCTCCTCTCGCCCCAACTCACCTTCCTCCCCTTCCGCTGCCTCCACCACCACTCCCCCTCCTCCCACCTCCTCCTCCTCCAATTACTCCGTGTCCGCCTTCCGCGCCTTCTCCACTGACCACATCTGGTCCCTCGAAGCCCCTCTTCGCGACGCCCATTGGCGCTCCCTCTATGGCATCTCCCACCCTGTCTTCACCACCATCGTTGACAAACTCAAACCCCACATTGCCCTCTCCAATCTCTCTCTCCCTTCCGATTACGCCGTTGCCATGGTCCTCTCCCGTCTCTGCCATGGCCTCTCCGCTAAAACCCTAGCTGCCCGTTTCTCCCTCGAACCCTATCTCGTTTCCAAAATCACCAACATGGTCACCCGTCTTTTGGCCACCAAACTCTACGCTGAATTCATCAAAATTCCGGTCAGTCGTCGGCGCTTGATTGAAACAACTCAAGCATTTGAAAAATTGACATCTCTACCCAATATGTGTGGTGCCATTGATAGCAGTCCAATCAAGCTTCGTCGATTGCCTGCCGACCAGAGCATTTCGACTAATTACAATTGCCGATTTGGGTATCCATCGGTTCTGCTTCAGGTCGTTGCTGACAACAAGAAGATCTTCTGGGATGTATGCGTTAAAGCTCCTGGTGGCAGTGATGATGCGAGCCATTTTAGGGATAGTCTTATGTACCATAGGCTTACTTCTGGTGATATTGTATGGGATAAGGTTATCAATGTTAGGGGTCACCATGTTCGTCCCTACATTGTTGGAGATTGGGGCTATCCTCTGTTGTCTTTCCTGTTGACACCATTTTCGCCGAACGGCATCGGCACGCCTGCACAGAACCTGTTCGATGGAATGCTAATGAAGGGTCGGTCTGTTGTGGTTGACGCAATTGGGTTGCTGAAGGCTAGGTGGAAGATCCTTCAGGATTTGAATGTGGGTTTAAGCCATGCCCCACAGACCATTGTTGCTTGTTGTGTACTGCATAATTTGTGTCAAATTGCCAAGGAGCCAGAGCCTGAACCTTTGAAGGATCCAGAGGAGACTGGCCCTGCTCCTGATATCCTTGACAGTGAGAAATCCTTGTGTTACTATGGTGAAAGTGTGAGGCAGGCGTTGGCTGATGATTTGCATCATAGGCTTTCATCGAGATAG
mRNA sequence
ATGGATCAATCCTTCTTACTAATGCTCTCAACCCTCCTTCATTTCCACAACTACCTAGATCCCACCATTTCCCTCCTCCCCTCCACTCCCTCCTCCGCCTCCTCCCCTTCCTCCGCCTCCCTCAACTCCCCCACCTCCCTCCTCTCCTCTTCCTCCGCCGCACCTCTCCTCTTCTTCACCATCGCCTCCGTTCTCTCCTTCATCGCCTCCTCTCGCCCCAACTCACCTTCCTCCCCTTCCGCTGCCTCCACCACCACTCCCCCTCCTCCCACCTCCTCCTCCTCCAATTACTCCGTGTCCGCCTTCCGCGCCTTCTCCACTGACCACATCTGGTCCCTCGAAGCCCCTCTTCGCGACGCCCATTGGCGCTCCCTCTATGGCATCTCCCACCCTGTCTTCACCACCATCGTTGACAAACTCAAACCCCACATTGCCCTCTCCAATCTCTCTCTCCCTTCCGATTACGCCGTTGCCATGGTCCTCTCCCGTCTCTGCCATGGCCTCTCCGCTAAAACCCTAGCTGCCCGTTTCTCCCTCGAACCCTATCTCGTTTCCAAAATCACCAACATGGTCACCCGTCTTTTGGCCACCAAACTCTACGCTGAATTCATCAAAATTCCGGTCAGTCGTCGGCGCTTGATTGAAACAACTCAAGCATTTGAAAAATTGACATCTCTACCCAATATGTGTGGTGCCATTGATAGCAGTCCAATCAAGCTTCGTCGATTGCCTGCCGACCAGAGCATTTCGACTAATTACAATTGCCGATTTGGGTATCCATCGGTTCTGCTTCAGGTCGTTGCTGACAACAAGAAGATCTTCTGGGATGTATGCGTTAAAGCTCCTGGTGGCAGTGATGATGCGAGCCATTTTAGGGATAGTCTTATGTACCATAGGCTTACTTCTGGTGATATTGTATGGGATAAGGTTATCAATGTTAGGGGTCACCATGTTCGTCCCTACATTGTTGGAGATTGGGGCTATCCTCTGTTGTCTTTCCTGTTGACACCATTTTCGCCGAACGGCATCGGCACGCCTGCACAGAACCTGTTCGATGGAATGCTAATGAAGGGTCGGTCTGTTGTGGTTGACGCAATTGGGTTGCTGAAGGCTAGGTGGAAGATCCTTCAGGATTTGAATGTGGGTTTAAGCCATGCCCCACAGACCATTGTTGCTTGTTGTGTACTGCATAATTTGTGTCAAATTGCCAAGGAGCCAGAGCCTGAACCTTTGAAGGATCCAGAGGAGACTGGCCCTGCTCCTGATATCCTTGACAGTGAGAAATCCTTGTGTTACTATGGTGAAAGTGTGAGGCAGGCGTTGGCTGATGATTTGCATCATAGGCTTTCATCGAGATAG
Coding sequence (CDS)
ATGGATCAATCCTTCTTACTAATGCTCTCAACCCTCCTTCATTTCCACAACTACCTAGATCCCACCATTTCCCTCCTCCCCTCCACTCCCTCCTCCGCCTCCTCCCCTTCCTCCGCCTCCCTCAACTCCCCCACCTCCCTCCTCTCCTCTTCCTCCGCCGCACCTCTCCTCTTCTTCACCATCGCCTCCGTTCTCTCCTTCATCGCCTCCTCTCGCCCCAACTCACCTTCCTCCCCTTCCGCTGCCTCCACCACCACTCCCCCTCCTCCCACCTCCTCCTCCTCCAATTACTCCGTGTCCGCCTTCCGCGCCTTCTCCACTGACCACATCTGGTCCCTCGAAGCCCCTCTTCGCGACGCCCATTGGCGCTCCCTCTATGGCATCTCCCACCCTGTCTTCACCACCATCGTTGACAAACTCAAACCCCACATTGCCCTCTCCAATCTCTCTCTCCCTTCCGATTACGCCGTTGCCATGGTCCTCTCCCGTCTCTGCCATGGCCTCTCCGCTAAAACCCTAGCTGCCCGTTTCTCCCTCGAACCCTATCTCGTTTCCAAAATCACCAACATGGTCACCCGTCTTTTGGCCACCAAACTCTACGCTGAATTCATCAAAATTCCGGTCAGTCGTCGGCGCTTGATTGAAACAACTCAAGCATTTGAAAAATTGACATCTCTACCCAATATGTGTGGTGCCATTGATAGCAGTCCAATCAAGCTTCGTCGATTGCCTGCCGACCAGAGCATTTCGACTAATTACAATTGCCGATTTGGGTATCCATCGGTTCTGCTTCAGGTCGTTGCTGACAACAAGAAGATCTTCTGGGATGTATGCGTTAAAGCTCCTGGTGGCAGTGATGATGCGAGCCATTTTAGGGATAGTCTTATGTACCATAGGCTTACTTCTGGTGATATTGTATGGGATAAGGTTATCAATGTTAGGGGTCACCATGTTCGTCCCTACATTGTTGGAGATTGGGGCTATCCTCTGTTGTCTTTCCTGTTGACACCATTTTCGCCGAACGGCATCGGCACGCCTGCACAGAACCTGTTCGATGGAATGCTAATGAAGGGTCGGTCTGTTGTGGTTGACGCAATTGGGTTGCTGAAGGCTAGGTGGAAGATCCTTCAGGATTTGAATGTGGGTTTAAGCCATGCCCCACAGACCATTGTTGCTTGTTGTGTACTGCATAATTTGTGTCAAATTGCCAAGGAGCCAGAGCCTGAACCTTTGAAGGATCCAGAGGAGACTGGCCCTGCTCCTGATATCCTTGACAGTGAGAAATCCTTGTGTTACTATGGTGAAAGTGTGAGGCAGGCGTTGGCTGATGATTTGCATCATAGGCTTTCATCGAGATAG
Protein sequence
MDQSFLLMLSTLLHFHNYLDPTISLLPSTPSSASSPSSASLNSPTSLLSSSSAAPLLFFTIASVLSFIASSRPNSPSSPSAASTTTPPPPTSSSSNYSVSAFRAFSTDHIWSLEAPLRDAHWRSLYGISHPVFTTIVDKLKPHIALSNLSLPSDYAVAMVLSRLCHGLSAKTLAARFSLEPYLVSKITNMVTRLLATKLYAEFIKIPVSRRRLIETTQAFEKLTSLPNMCGAIDSSPIKLRRLPADQSISTNYNCRFGYPSVLLQVVADNKKIFWDVCVKAPGGSDDASHFRDSLMYHRLTSGDIVWDKVINVRGHHVRPYIVGDWGYPLLSFLLTPFSPNGIGTPAQNLFDGMLMKGRSVVVDAIGLLKARWKILQDLNVGLSHAPQTIVACCVLHNLCQIAKEPEPEPLKDPEETGPAPDILDSEKSLCYYGESVRQALADDLHHRLSSR
Homology
BLAST of CmaCh02G004410 vs. ExPASy Swiss-Prot
Match:
Q94K49 (Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 OS=Arabidopsis thaliana OX=3702 GN=ALP1 PE=1 SV=1)
HSP 1 Score: 87.4 bits (215), Expect = 4.4e-16
Identity = 89/315 (28.25%), Postives = 141/315 (44.76%), Query Frame = 0
Query: 141 KPHIALSNLS---LPSDYAVAMVLSRLCHGLSAKTLAARFSLEPYLVSKITNMVTRLLAT 200
+P L N+ L + VA+ L RL G S ++ A F + VS++T L
Sbjct: 90 RPPSGLINIEGRLLSVEKQVAIALRRLASGDSQVSVGAAFGVGQSTVSQVTWRFIEALEE 149
Query: 201 KLYAEFIKIPVSRRRLIETTQAFEKLTSLPNMCGAIDSSPIKLRRLPADQSISTNYNCRF 260
+ ++ P S R+ E FE++ LPN CGAID++ I + LPA Q+ +
Sbjct: 150 RA-KHHLRWPDS-DRIEEIKSKFEEMYGLPNCCGAIDTTHI-IMTLPAVQASDDWCDQEK 209
Query: 261 GYPSVLLQVVADNKKIFWDVCVKAPGGSDDASHFRDSLMYHRLTSGDIVWDKVINV-RGH 320
Y S+ LQ V D++ F ++ PGG + + S + + I+ + +G
Sbjct: 210 NY-SMFLQGVFDHEMRFLNMVTGWPGGMTVSKLLKFSGFFKLCENAQILDGNPKTLSQGA 269
Query: 321 HVRPYIVGDWGYPLLSFLLTPFSPNGIGTPAQNL--FDGMLMKGRSVVVDAIGLLKARWK 380
+R Y+VG YPLL +L+TP + P+ ++ F+ K RSV A LK W+
Sbjct: 270 QIREYVVGGISYPLLPWLITPHDSD---HPSDSMVAFNERHEKVRSVAATAFQQLKGSWR 329
Query: 381 ILQDL--NVGLSHAPQTIVACCVLHNLCQIAKE--PEPEPLKDPEETGPAPDILDSEKSL 440
IL + P I+ CC+LHN+ + E PL ++G A + L
Sbjct: 330 ILSKVMWRPDRRKLPSIILVCCLLHNIIIDCGDYLQEDVPLSGHHDSGYADRYCKQTEPL 389
Query: 441 CYYGESVRQALADDL 446
G +R L + L
Sbjct: 390 ---GSELRGCLTEHL 394
BLAST of CmaCh02G004410 vs. ExPASy Swiss-Prot
Match:
Q9M2U3 (Protein ALP1-like OS=Arabidopsis thaliana OX=3702 GN=At3g55350 PE=2 SV=1)
HSP 1 Score: 86.7 bits (213), Expect = 7.6e-16
Identity = 105/387 (27.13%), Postives = 162/387 (41.86%), Query Frame = 0
Query: 77 SSPSAASTTTPPPPTSSSSNYSVSAFRAFSTDHIWSLEAPLRDAHWRSLYGISHPVFTTI 136
+S SAA+ SS+ S+ + FS P + S++ IS F I
Sbjct: 30 TSASAAAALNNNDDDDDSSSQSLDWWDGFSRRIYGGSTDP---KTFESVFKISRKTFDYI 89
Query: 137 VDKLKPHIAL--SNLS------LPSDYAVAMVLSRLCHGLSAKTLAARFSLEPYLVSKIT 196
+K +N S L + VA+ L RL G S + F + VS+IT
Sbjct: 90 CSLVKADFTAKPANFSDSNGNPLSLNDRVAVALRRLGSGESLSVIGETFGMNQSTVSQIT 149
Query: 197 NMVTRLLATKLYAEFIKIPVSRRRLIETTQAFEKLTSLPNMCGAIDSSPIKLRRLPADQS 256
+ + + P +L E FEK++ LPN CGAID + I + LPA +
Sbjct: 150 WRFVESMEERA-IHHLSWP---SKLDEIKSKFEKISGLPNCCGAIDITHI-VMNLPAVEP 209
Query: 257 ISTNYNCRFGYPSVLLQVVADNKKIFWDVCVKAPGGSDDASHFRDSLMYHRLTSGD-IVW 316
+ + S+ LQ V D F DV PG +D ++S Y + G +
Sbjct: 210 SNKVWLDGEKNFSMTLQAVVDPDMRFLDVIAGWPGSLNDDVVLKNSGFYKLVEKGKRLNG 269
Query: 317 DKVINVRGHHVRPYIVGDWGYPLLSFLLTPFSPNGIGTPAQNLFDGMLMKGRSVVVDAIG 376
+K+ +R YIVGD G+PLL +LLTP+ P Q F+ + A+
Sbjct: 270 EKLPLSERTELREYIVGDSGFPLLPWLLTPYQGKPTSLP-QTEFNKRHSEATKAAQMALS 329
Query: 377 LLKARWKILQDL--NVGLSHAPQTIVACCVLHNLCQIAKEPEPEPLKDPEETGPAPDILD 436
LK RW+I+ + + P+ I CC+LHN I + E + L D + D+
Sbjct: 330 KLKDRWRIINGVMWMPDRNRLPRIIFVCCLLHN---IIIDMEDQTL-DDQPLSQQHDMNY 389
Query: 437 SEKSLCYYGESVRQALADDLHHRLSSR 453
++S C + L D+L +L +
Sbjct: 390 RQRS-CKLADEASSVLRDELSDQLCGK 402
BLAST of CmaCh02G004410 vs. TAIR 10
Match:
AT3G19120.1 (PIF / Ping-Pong family of plant transposases )
HSP 1 Score: 645.6 bits (1664), Expect = 3.0e-185
Identity = 329/452 (72.79%), Postives = 385/452 (85.18%), Query Frame = 0
Query: 1 MDQSFLLMLSTLLHFHNYLDPTISLLPSTPSSASSPSSASLNSPTSLLSSSSAAPLLFFT 60
M+++F+ MLS LLH N LDPT ST S++S SS S +P+SLLS+SSAAPLLFFT
Sbjct: 1 MEEAFMAMLSHLLHLQNSLDPT-----STLFSSASTSSQSSTTPSSLLSTSSAAPLLFFT 60
Query: 61 IASVLSFIASSRPNSPSSPSAASTTTPPPPTSSSSNYSVSAFRAFSTDHIWSLEAPLRDA 120
+AS+LSF+A +R ++ SS S+ S + PPP + +YSV+AFRA +TDHIWSL+APLRDA
Sbjct: 61 LASLLSFLAVNRSSTESSSSSESPSPSPPPPLADGDYSVAAFRALTTDHIWSLDAPLRDA 120
Query: 121 HWRSLYGISHPVFTTIVDKLKPHIALSNLSLPSDYAVAMVLSRLCHGLSAKTLAARFSLE 180
WRSLYG+S+PVF T+VDKLKP I SNLSLP+DYAVAMVLSRL HG SAKTLA+R+SL+
Sbjct: 121 RWRSLYGLSYPVFITVVDKLKPFITASNLSLPADYAVAMVLSRLAHGCSAKTLASRYSLD 180
Query: 181 PYLVSKITNMVTRLLATKLYAEFIKIPVSRRRLIETTQAFEKLTSLPNMCGAIDSSPIKL 240
PYL+SKITNMVTRLLATKLY EFIKIPV +RRLIETTQ FE+LTSLPN+CGAIDS+P+KL
Sbjct: 181 PYLISKITNMVTRLLATKLYPEFIKIPVGKRRLIETTQGFEELTSLPNICGAIDSTPVKL 240
Query: 241 RRLPADQSISTNYNCRFGYPSVLLQVVADNKKIFWDVCVKAPGGSDDASHFRDSLMYHRL 300
RR + Y C++GY +VLLQVVAD+KKIFWDVCVKAPGG DD+SHFRDSL+Y RL
Sbjct: 241 RR-RTKLNPRNIYGCKYGYDAVLLQVVADHKKIFWDVCVKAPGGEDDSSHFRDSLLYKRL 300
Query: 301 TSGDIVWDKVINVRGHHVRPYIVGDWGYPLLSFLLTPFSPNGIGTPAQNLFDGMLMKGRS 360
TSGDIVW+KVIN+RGHHVRPYIVGDW YPLLSFL+TPFSPNG GTP +NLFDGMLMKGRS
Sbjct: 301 TSGDIVWEKVINIRGHHVRPYIVGDWCYPLLSFLMTPFSPNGSGTPPENLFDGMLMKGRS 360
Query: 361 VVVDAIGLLKARWKILQDLNVGLSHAPQTIVACCVLHNLCQIAKEPEPEPLKDPEETGPA 420
VVV+AIGLLKARWKILQ LNVG++HAPQTIVACCVLHNLCQIA+EPEPE KDP+E G
Sbjct: 361 VVVEAIGLLKARWKILQSLNVGVNHAPQTIVACCVLHNLCQIAREPEPEIWKDPDEAGTP 420
Query: 421 PDILDSEKSLCYYGESVRQALADDLHHRLSSR 453
+L+SE+ YYGES+RQALA+DLH RLSSR
Sbjct: 421 ARVLESERQFYYYGESLRQALAEDLHQRLSSR 446
BLAST of CmaCh02G004410 vs. TAIR 10
Match:
AT5G12010.1 (unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 108.2 bits (269), Expect = 1.7e-23
Identity = 83/310 (26.77%), Postives = 150/310 (48.39%), Query Frame = 0
Query: 113 LEAPLRDAHWRSLYGISHPVFTTIVDKLKPHIALSNLSL----PSDYAVAMVLSRLCHGL 172
L+ P D ++ + +S F I D+L +A + +L P VA+ + RL G
Sbjct: 168 LDYPEED--FKKAFRMSKSTFELICDELNSAVAKEDTALRNAIPVRQRVAVCIWRLATGE 227
Query: 173 SAKTLAARFSLEPYLVSKITNMVTRLLATKLYAEFIKIPVSRRRLIETTQAFEKLTSLPN 232
+ ++ +F L K+ V + + L ++++ P L + FE ++ +PN
Sbjct: 228 PLRLVSKKFGLGISTCHKLVLEVCKAIKDVLMPKYLQWP-DDESLRNIRERFESVSGIPN 287
Query: 233 MCGAIDSSPIKLRRLPADQSISTNYNCRF-------GYPSVLLQVVADNKKIFWDVCVKA 292
+ G++ ++ I + + S+++ +N R Y S+ +Q V + K +F D+C+
Sbjct: 288 VVGSMYTTHIPI--IAPKISVASYFNKRHTERNQKTSY-SITIQAVVNPKGVFTDLCIGW 347
Query: 293 PGGSDDASHFRDSLMYHRLTSGDIVWDKVINVRGHHVRPYIVGDWGYPLLSFLLTPFSPN 352
PG D SL+Y R +G + ++G ++ G G+PLL ++L P++
Sbjct: 348 PGSMPDDKVLEKSLLYQRANNGGL-------LKG----MWVAGGPGHPLLDWVLVPYTQQ 407
Query: 353 GIGTPAQNLFDGMLMKGRSVVVDAIGLLKARWKILQD-LNVGLSHAPQTIVACCVLHNLC 410
+ T Q+ F+ + + + V +A G LK RW LQ V L P + ACCVLHN+C
Sbjct: 408 NL-TWTQHAFNEKMSEVQGVAKEAFGRLKGRWACLQKRTEVKLQDLPTVLGACCVLHNIC 459
BLAST of CmaCh02G004410 vs. TAIR 10
Match:
AT3G63270.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 87.4 bits (215), Expect = 3.1e-17
Identity = 89/315 (28.25%), Postives = 141/315 (44.76%), Query Frame = 0
Query: 141 KPHIALSNLS---LPSDYAVAMVLSRLCHGLSAKTLAARFSLEPYLVSKITNMVTRLLAT 200
+P L N+ L + VA+ L RL G S ++ A F + VS++T L
Sbjct: 90 RPPSGLINIEGRLLSVEKQVAIALRRLASGDSQVSVGAAFGVGQSTVSQVTWRFIEALEE 149
Query: 201 KLYAEFIKIPVSRRRLIETTQAFEKLTSLPNMCGAIDSSPIKLRRLPADQSISTNYNCRF 260
+ ++ P S R+ E FE++ LPN CGAID++ I + LPA Q+ +
Sbjct: 150 RA-KHHLRWPDS-DRIEEIKSKFEEMYGLPNCCGAIDTTHI-IMTLPAVQASDDWCDQEK 209
Query: 261 GYPSVLLQVVADNKKIFWDVCVKAPGGSDDASHFRDSLMYHRLTSGDIVWDKVINV-RGH 320
Y S+ LQ V D++ F ++ PGG + + S + + I+ + +G
Sbjct: 210 NY-SMFLQGVFDHEMRFLNMVTGWPGGMTVSKLLKFSGFFKLCENAQILDGNPKTLSQGA 269
Query: 321 HVRPYIVGDWGYPLLSFLLTPFSPNGIGTPAQNL--FDGMLMKGRSVVVDAIGLLKARWK 380
+R Y+VG YPLL +L+TP + P+ ++ F+ K RSV A LK W+
Sbjct: 270 QIREYVVGGISYPLLPWLITPHDSD---HPSDSMVAFNERHEKVRSVAATAFQQLKGSWR 329
Query: 381 ILQDL--NVGLSHAPQTIVACCVLHNLCQIAKE--PEPEPLKDPEETGPAPDILDSEKSL 440
IL + P I+ CC+LHN+ + E PL ++G A + L
Sbjct: 330 ILSKVMWRPDRRKLPSIILVCCLLHNIIIDCGDYLQEDVPLSGHHDSGYADRYCKQTEPL 389
Query: 441 CYYGESVRQALADDL 446
G +R L + L
Sbjct: 390 ---GSELRGCLTEHL 394
BLAST of CmaCh02G004410 vs. TAIR 10
Match:
AT3G55350.1 (PIF / Ping-Pong family of plant transposases )
HSP 1 Score: 86.7 bits (213), Expect = 5.4e-17
Identity = 105/387 (27.13%), Postives = 162/387 (41.86%), Query Frame = 0
Query: 77 SSPSAASTTTPPPPTSSSSNYSVSAFRAFSTDHIWSLEAPLRDAHWRSLYGISHPVFTTI 136
+S SAA+ SS+ S+ + FS P + S++ IS F I
Sbjct: 30 TSASAAAALNNNDDDDDSSSQSLDWWDGFSRRIYGGSTDP---KTFESVFKISRKTFDYI 89
Query: 137 VDKLKPHIAL--SNLS------LPSDYAVAMVLSRLCHGLSAKTLAARFSLEPYLVSKIT 196
+K +N S L + VA+ L RL G S + F + VS+IT
Sbjct: 90 CSLVKADFTAKPANFSDSNGNPLSLNDRVAVALRRLGSGESLSVIGETFGMNQSTVSQIT 149
Query: 197 NMVTRLLATKLYAEFIKIPVSRRRLIETTQAFEKLTSLPNMCGAIDSSPIKLRRLPADQS 256
+ + + P +L E FEK++ LPN CGAID + I + LPA +
Sbjct: 150 WRFVESMEERA-IHHLSWP---SKLDEIKSKFEKISGLPNCCGAIDITHI-VMNLPAVEP 209
Query: 257 ISTNYNCRFGYPSVLLQVVADNKKIFWDVCVKAPGGSDDASHFRDSLMYHRLTSGD-IVW 316
+ + S+ LQ V D F DV PG +D ++S Y + G +
Sbjct: 210 SNKVWLDGEKNFSMTLQAVVDPDMRFLDVIAGWPGSLNDDVVLKNSGFYKLVEKGKRLNG 269
Query: 317 DKVINVRGHHVRPYIVGDWGYPLLSFLLTPFSPNGIGTPAQNLFDGMLMKGRSVVVDAIG 376
+K+ +R YIVGD G+PLL +LLTP+ P Q F+ + A+
Sbjct: 270 EKLPLSERTELREYIVGDSGFPLLPWLLTPYQGKPTSLP-QTEFNKRHSEATKAAQMALS 329
Query: 377 LLKARWKILQDL--NVGLSHAPQTIVACCVLHNLCQIAKEPEPEPLKDPEETGPAPDILD 436
LK RW+I+ + + P+ I CC+LHN I + E + L D + D+
Sbjct: 330 KLKDRWRIINGVMWMPDRNRLPRIIFVCCLLHN---IIIDMEDQTL-DDQPLSQQHDMNY 389
Query: 437 SEKSLCYYGESVRQALADDLHHRLSSR 453
++S C + L D+L +L +
Sbjct: 390 RQRS-CKLADEASSVLRDELSDQLCGK 402
BLAST of CmaCh02G004410 vs. TAIR 10
Match:
AT4G29780.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12010.1); Has 945 Blast hits to 944 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 519; Fungi - 43; Plants - 365; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). )
HSP 1 Score: 85.9 bits (211), Expect = 9.2e-17
Identity = 96/368 (26.09%), Postives = 159/368 (43.21%), Query Frame = 0
Query: 61 IASVLSFIASSRPNSPSSPSAASTTTPPPPTSSSSNYSVSAFRAF----STDHIWSLEAP 120
+A+V+S +AS + + + P +S S S R + +TD + P
Sbjct: 152 VAAVVSAVASG-----ADTTGLAAPVPTADIASGSGSGPSHRRLWVKERTTDWWDRVSRP 211
Query: 121 -LRDAHWRSLYGISHPVFTTIVDKLKPHIALSNL----SLPSDYAVAMVLSRLCHGLSAK 180
+ +R + +S F I ++L + N ++P+ V + + RL G +
Sbjct: 212 DFPEDEFRREFRMSKSTFNLICEELDTTVTKKNTMLRDAIPAPKRVGVCVWRLATGAPLR 271
Query: 181 TLAARFSLEPYLVSKITNMVTRLLATKLYAEFIKIPVSRRRLIETTQAFEKLTSLPNMCG 240
++ RF L K+ V R + L +++ P S + T FE + +PN+ G
Sbjct: 272 HVSERFGLGISTCHKLVIEVCRAIYDVLMPKYLLWP-SDSEINSTKAKFESVHKIPNVVG 331
Query: 241 AIDSSPI-----KLRRLPADQSISTNYNCRFGYPSVLLQVVADNKKIFWDVCVKAPGG-S 300
+I ++ I K+ T N + Y S+ +Q V + IF DVC+ PG +
Sbjct: 332 SIYTTHIPIIAPKVHVAAYFNKRHTERNQKTSY-SITVQGVVNADGIFTDVCIGNPGSLT 391
Query: 301 DDASHFRDSLMYHRLTSGDIVWDKVINVRGHHVRPYIVGDWGYPLLSFLLTPFSPNGIGT 360
DD + SL R RG +IVG+ G+PL +LL P++ + T
Sbjct: 392 DDQILEKSSLSRQRA------------ARGMLRDSWIVGNSGFPLTDYLLVPYTRQNL-T 451
Query: 361 PAQNLFDGMLMKGRSVVVDAIGLLKARWKILQD-LNVGLSHAPQTIVACCVLHNLCQIAK 413
Q+ F+ + + + + A LK RW LQ V L P + ACCVLHN+C++ K
Sbjct: 452 WTQHAFNESIGEIQGIATAAFERLKGRWACLQKRTEVKLQDLPYVLGACCVLHNICEMRK 499
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q94K49 | 4.4e-16 | 28.25 | Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 OS=Arabidopsis thaliana OX=... | [more] |
Q9M2U3 | 7.6e-16 | 27.13 | Protein ALP1-like OS=Arabidopsis thaliana OX=3702 GN=At3g55350 PE=2 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT3G19120.1 | 3.0e-185 | 72.79 | PIF / Ping-Pong family of plant transposases | [more] |
AT5G12010.1 | 1.7e-23 | 26.77 | unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, ... | [more] |
AT3G63270.1 | 3.1e-17 | 28.25 | CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... | [more] |
AT3G55350.1 | 5.4e-17 | 27.13 | PIF / Ping-Pong family of plant transposases | [more] |
AT4G29780.1 | 9.2e-17 | 26.09 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |