CmaCh02G004410 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G004410
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionDDE Tnp4 domain-containing protein
LocationCma_Chr02: 2246131 .. 2247489 (+)
RNA-Seq ExpressionCmaCh02G004410
SyntenyCmaCh02G004410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAATCCTTCTTACTAATGCTCTCAACCCTCCTTCATTTCCACAACTACCTAGATCCCACCATTTCCCTCCTCCCCTCCACTCCCTCCTCCGCCTCCTCCCCTTCCTCCGCCTCCCTCAACTCCCCCACCTCCCTCCTCTCCTCTTCCTCCGCCGCACCTCTCCTCTTCTTCACCATCGCCTCCGTTCTCTCCTTCATCGCCTCCTCTCGCCCCAACTCACCTTCCTCCCCTTCCGCTGCCTCCACCACCACTCCCCCTCCTCCCACCTCCTCCTCCTCCAATTACTCCGTGTCCGCCTTCCGCGCCTTCTCCACTGACCACATCTGGTCCCTCGAAGCCCCTCTTCGCGACGCCCATTGGCGCTCCCTCTATGGCATCTCCCACCCTGTCTTCACCACCATCGTTGACAAACTCAAACCCCACATTGCCCTCTCCAATCTCTCTCTCCCTTCCGATTACGCCGTTGCCATGGTCCTCTCCCGTCTCTGCCATGGCCTCTCCGCTAAAACCCTAGCTGCCCGTTTCTCCCTCGAACCCTATCTCGTTTCCAAAATCACCAACATGGTCACCCGTCTTTTGGCCACCAAACTCTACGCTGAATTCATCAAAATTCCGGTCAGTCGTCGGCGCTTGATTGAAACAACTCAAGCATTTGAAAAATTGACATCTCTACCCAATATGTGTGGTGCCATTGATAGCAGTCCAATCAAGCTTCGTCGATTGCCTGCCGACCAGAGCATTTCGACTAATTACAATTGCCGATTTGGGTATCCATCGGTTCTGCTTCAGGTCGTTGCTGACAACAAGAAGATCTTCTGGGATGTATGCGTTAAAGCTCCTGGTGGCAGTGATGATGCGAGCCATTTTAGGGATAGTCTTATGTACCATAGGCTTACTTCTGGTGATATTGTATGGGATAAGGTTATCAATGTTAGGGGTCACCATGTTCGTCCCTACATTGTTGGAGATTGGGGCTATCCTCTGTTGTCTTTCCTGTTGACACCATTTTCGCCGAACGGCATCGGCACGCCTGCACAGAACCTGTTCGATGGAATGCTAATGAAGGGTCGGTCTGTTGTGGTTGACGCAATTGGGTTGCTGAAGGCTAGGTGGAAGATCCTTCAGGATTTGAATGTGGGTTTAAGCCATGCCCCACAGACCATTGTTGCTTGTTGTGTACTGCATAATTTGTGTCAAATTGCCAAGGAGCCAGAGCCTGAACCTTTGAAGGATCCAGAGGAGACTGGCCCTGCTCCTGATATCCTTGACAGTGAGAAATCCTTGTGTTACTATGGTGAAAGTGTGAGGCAGGCGTTGGCTGATGATTTGCATCATAGGCTTTCATCGAGATAG

mRNA sequence

ATGGATCAATCCTTCTTACTAATGCTCTCAACCCTCCTTCATTTCCACAACTACCTAGATCCCACCATTTCCCTCCTCCCCTCCACTCCCTCCTCCGCCTCCTCCCCTTCCTCCGCCTCCCTCAACTCCCCCACCTCCCTCCTCTCCTCTTCCTCCGCCGCACCTCTCCTCTTCTTCACCATCGCCTCCGTTCTCTCCTTCATCGCCTCCTCTCGCCCCAACTCACCTTCCTCCCCTTCCGCTGCCTCCACCACCACTCCCCCTCCTCCCACCTCCTCCTCCTCCAATTACTCCGTGTCCGCCTTCCGCGCCTTCTCCACTGACCACATCTGGTCCCTCGAAGCCCCTCTTCGCGACGCCCATTGGCGCTCCCTCTATGGCATCTCCCACCCTGTCTTCACCACCATCGTTGACAAACTCAAACCCCACATTGCCCTCTCCAATCTCTCTCTCCCTTCCGATTACGCCGTTGCCATGGTCCTCTCCCGTCTCTGCCATGGCCTCTCCGCTAAAACCCTAGCTGCCCGTTTCTCCCTCGAACCCTATCTCGTTTCCAAAATCACCAACATGGTCACCCGTCTTTTGGCCACCAAACTCTACGCTGAATTCATCAAAATTCCGGTCAGTCGTCGGCGCTTGATTGAAACAACTCAAGCATTTGAAAAATTGACATCTCTACCCAATATGTGTGGTGCCATTGATAGCAGTCCAATCAAGCTTCGTCGATTGCCTGCCGACCAGAGCATTTCGACTAATTACAATTGCCGATTTGGGTATCCATCGGTTCTGCTTCAGGTCGTTGCTGACAACAAGAAGATCTTCTGGGATGTATGCGTTAAAGCTCCTGGTGGCAGTGATGATGCGAGCCATTTTAGGGATAGTCTTATGTACCATAGGCTTACTTCTGGTGATATTGTATGGGATAAGGTTATCAATGTTAGGGGTCACCATGTTCGTCCCTACATTGTTGGAGATTGGGGCTATCCTCTGTTGTCTTTCCTGTTGACACCATTTTCGCCGAACGGCATCGGCACGCCTGCACAGAACCTGTTCGATGGAATGCTAATGAAGGGTCGGTCTGTTGTGGTTGACGCAATTGGGTTGCTGAAGGCTAGGTGGAAGATCCTTCAGGATTTGAATGTGGGTTTAAGCCATGCCCCACAGACCATTGTTGCTTGTTGTGTACTGCATAATTTGTGTCAAATTGCCAAGGAGCCAGAGCCTGAACCTTTGAAGGATCCAGAGGAGACTGGCCCTGCTCCTGATATCCTTGACAGTGAGAAATCCTTGTGTTACTATGGTGAAAGTGTGAGGCAGGCGTTGGCTGATGATTTGCATCATAGGCTTTCATCGAGATAG

Coding sequence (CDS)

ATGGATCAATCCTTCTTACTAATGCTCTCAACCCTCCTTCATTTCCACAACTACCTAGATCCCACCATTTCCCTCCTCCCCTCCACTCCCTCCTCCGCCTCCTCCCCTTCCTCCGCCTCCCTCAACTCCCCCACCTCCCTCCTCTCCTCTTCCTCCGCCGCACCTCTCCTCTTCTTCACCATCGCCTCCGTTCTCTCCTTCATCGCCTCCTCTCGCCCCAACTCACCTTCCTCCCCTTCCGCTGCCTCCACCACCACTCCCCCTCCTCCCACCTCCTCCTCCTCCAATTACTCCGTGTCCGCCTTCCGCGCCTTCTCCACTGACCACATCTGGTCCCTCGAAGCCCCTCTTCGCGACGCCCATTGGCGCTCCCTCTATGGCATCTCCCACCCTGTCTTCACCACCATCGTTGACAAACTCAAACCCCACATTGCCCTCTCCAATCTCTCTCTCCCTTCCGATTACGCCGTTGCCATGGTCCTCTCCCGTCTCTGCCATGGCCTCTCCGCTAAAACCCTAGCTGCCCGTTTCTCCCTCGAACCCTATCTCGTTTCCAAAATCACCAACATGGTCACCCGTCTTTTGGCCACCAAACTCTACGCTGAATTCATCAAAATTCCGGTCAGTCGTCGGCGCTTGATTGAAACAACTCAAGCATTTGAAAAATTGACATCTCTACCCAATATGTGTGGTGCCATTGATAGCAGTCCAATCAAGCTTCGTCGATTGCCTGCCGACCAGAGCATTTCGACTAATTACAATTGCCGATTTGGGTATCCATCGGTTCTGCTTCAGGTCGTTGCTGACAACAAGAAGATCTTCTGGGATGTATGCGTTAAAGCTCCTGGTGGCAGTGATGATGCGAGCCATTTTAGGGATAGTCTTATGTACCATAGGCTTACTTCTGGTGATATTGTATGGGATAAGGTTATCAATGTTAGGGGTCACCATGTTCGTCCCTACATTGTTGGAGATTGGGGCTATCCTCTGTTGTCTTTCCTGTTGACACCATTTTCGCCGAACGGCATCGGCACGCCTGCACAGAACCTGTTCGATGGAATGCTAATGAAGGGTCGGTCTGTTGTGGTTGACGCAATTGGGTTGCTGAAGGCTAGGTGGAAGATCCTTCAGGATTTGAATGTGGGTTTAAGCCATGCCCCACAGACCATTGTTGCTTGTTGTGTACTGCATAATTTGTGTCAAATTGCCAAGGAGCCAGAGCCTGAACCTTTGAAGGATCCAGAGGAGACTGGCCCTGCTCCTGATATCCTTGACAGTGAGAAATCCTTGTGTTACTATGGTGAAAGTGTGAGGCAGGCGTTGGCTGATGATTTGCATCATAGGCTTTCATCGAGATAG

Protein sequence

MDQSFLLMLSTLLHFHNYLDPTISLLPSTPSSASSPSSASLNSPTSLLSSSSAAPLLFFTIASVLSFIASSRPNSPSSPSAASTTTPPPPTSSSSNYSVSAFRAFSTDHIWSLEAPLRDAHWRSLYGISHPVFTTIVDKLKPHIALSNLSLPSDYAVAMVLSRLCHGLSAKTLAARFSLEPYLVSKITNMVTRLLATKLYAEFIKIPVSRRRLIETTQAFEKLTSLPNMCGAIDSSPIKLRRLPADQSISTNYNCRFGYPSVLLQVVADNKKIFWDVCVKAPGGSDDASHFRDSLMYHRLTSGDIVWDKVINVRGHHVRPYIVGDWGYPLLSFLLTPFSPNGIGTPAQNLFDGMLMKGRSVVVDAIGLLKARWKILQDLNVGLSHAPQTIVACCVLHNLCQIAKEPEPEPLKDPEETGPAPDILDSEKSLCYYGESVRQALADDLHHRLSSR
Homology
BLAST of CmaCh02G004410 vs. ExPASy Swiss-Prot
Match: Q94K49 (Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 OS=Arabidopsis thaliana OX=3702 GN=ALP1 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.4e-16
Identity = 89/315 (28.25%), Postives = 141/315 (44.76%), Query Frame = 0

Query: 141 KPHIALSNLS---LPSDYAVAMVLSRLCHGLSAKTLAARFSLEPYLVSKITNMVTRLLAT 200
           +P   L N+    L  +  VA+ L RL  G S  ++ A F +    VS++T      L  
Sbjct: 90  RPPSGLINIEGRLLSVEKQVAIALRRLASGDSQVSVGAAFGVGQSTVSQVTWRFIEALEE 149

Query: 201 KLYAEFIKIPVSRRRLIETTQAFEKLTSLPNMCGAIDSSPIKLRRLPADQSISTNYNCRF 260
           +     ++ P S  R+ E    FE++  LPN CGAID++ I +  LPA Q+     +   
Sbjct: 150 RA-KHHLRWPDS-DRIEEIKSKFEEMYGLPNCCGAIDTTHI-IMTLPAVQASDDWCDQEK 209

Query: 261 GYPSVLLQVVADNKKIFWDVCVKAPGGSDDASHFRDSLMYHRLTSGDIVWDKVINV-RGH 320
            Y S+ LQ V D++  F ++    PGG   +   + S  +    +  I+      + +G 
Sbjct: 210 NY-SMFLQGVFDHEMRFLNMVTGWPGGMTVSKLLKFSGFFKLCENAQILDGNPKTLSQGA 269

Query: 321 HVRPYIVGDWGYPLLSFLLTPFSPNGIGTPAQNL--FDGMLMKGRSVVVDAIGLLKARWK 380
            +R Y+VG   YPLL +L+TP   +    P+ ++  F+    K RSV   A   LK  W+
Sbjct: 270 QIREYVVGGISYPLLPWLITPHDSD---HPSDSMVAFNERHEKVRSVAATAFQQLKGSWR 329

Query: 381 ILQDL--NVGLSHAPQTIVACCVLHNLCQIAKE--PEPEPLKDPEETGPAPDILDSEKSL 440
           IL  +         P  I+ CC+LHN+     +   E  PL    ++G A       + L
Sbjct: 330 ILSKVMWRPDRRKLPSIILVCCLLHNIIIDCGDYLQEDVPLSGHHDSGYADRYCKQTEPL 389

Query: 441 CYYGESVRQALADDL 446
              G  +R  L + L
Sbjct: 390 ---GSELRGCLTEHL 394

BLAST of CmaCh02G004410 vs. ExPASy Swiss-Prot
Match: Q9M2U3 (Protein ALP1-like OS=Arabidopsis thaliana OX=3702 GN=At3g55350 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.6e-16
Identity = 105/387 (27.13%), Postives = 162/387 (41.86%), Query Frame = 0

Query: 77  SSPSAASTTTPPPPTSSSSNYSVSAFRAFSTDHIWSLEAPLRDAHWRSLYGISHPVFTTI 136
           +S SAA+          SS+ S+  +  FS         P     + S++ IS   F  I
Sbjct: 30  TSASAAAALNNNDDDDDSSSQSLDWWDGFSRRIYGGSTDP---KTFESVFKISRKTFDYI 89

Query: 137 VDKLKPHIAL--SNLS------LPSDYAVAMVLSRLCHGLSAKTLAARFSLEPYLVSKIT 196
              +K       +N S      L  +  VA+ L RL  G S   +   F +    VS+IT
Sbjct: 90  CSLVKADFTAKPANFSDSNGNPLSLNDRVAVALRRLGSGESLSVIGETFGMNQSTVSQIT 149

Query: 197 NMVTRLLATKLYAEFIKIPVSRRRLIETTQAFEKLTSLPNMCGAIDSSPIKLRRLPADQS 256
                 +  +     +  P    +L E    FEK++ LPN CGAID + I +  LPA + 
Sbjct: 150 WRFVESMEERA-IHHLSWP---SKLDEIKSKFEKISGLPNCCGAIDITHI-VMNLPAVEP 209

Query: 257 ISTNYNCRFGYPSVLLQVVADNKKIFWDVCVKAPGGSDDASHFRDSLMYHRLTSGD-IVW 316
            +  +       S+ LQ V D    F DV    PG  +D    ++S  Y  +  G  +  
Sbjct: 210 SNKVWLDGEKNFSMTLQAVVDPDMRFLDVIAGWPGSLNDDVVLKNSGFYKLVEKGKRLNG 269

Query: 317 DKVINVRGHHVRPYIVGDWGYPLLSFLLTPFSPNGIGTPAQNLFDGMLMKGRSVVVDAIG 376
           +K+       +R YIVGD G+PLL +LLTP+       P Q  F+    +       A+ 
Sbjct: 270 EKLPLSERTELREYIVGDSGFPLLPWLLTPYQGKPTSLP-QTEFNKRHSEATKAAQMALS 329

Query: 377 LLKARWKILQDL--NVGLSHAPQTIVACCVLHNLCQIAKEPEPEPLKDPEETGPAPDILD 436
            LK RW+I+  +      +  P+ I  CC+LHN   I  + E + L D +      D+  
Sbjct: 330 KLKDRWRIINGVMWMPDRNRLPRIIFVCCLLHN---IIIDMEDQTL-DDQPLSQQHDMNY 389

Query: 437 SEKSLCYYGESVRQALADDLHHRLSSR 453
            ++S C   +     L D+L  +L  +
Sbjct: 390 RQRS-CKLADEASSVLRDELSDQLCGK 402

BLAST of CmaCh02G004410 vs. TAIR 10
Match: AT3G19120.1 (PIF / Ping-Pong family of plant transposases )

HSP 1 Score: 645.6 bits (1664), Expect = 3.0e-185
Identity = 329/452 (72.79%), Postives = 385/452 (85.18%), Query Frame = 0

Query: 1   MDQSFLLMLSTLLHFHNYLDPTISLLPSTPSSASSPSSASLNSPTSLLSSSSAAPLLFFT 60
           M+++F+ MLS LLH  N LDPT     ST  S++S SS S  +P+SLLS+SSAAPLLFFT
Sbjct: 1   MEEAFMAMLSHLLHLQNSLDPT-----STLFSSASTSSQSSTTPSSLLSTSSAAPLLFFT 60

Query: 61  IASVLSFIASSRPNSPSSPSAASTTTPPPPTSSSSNYSVSAFRAFSTDHIWSLEAPLRDA 120
           +AS+LSF+A +R ++ SS S+ S +  PPP  +  +YSV+AFRA +TDHIWSL+APLRDA
Sbjct: 61  LASLLSFLAVNRSSTESSSSSESPSPSPPPPLADGDYSVAAFRALTTDHIWSLDAPLRDA 120

Query: 121 HWRSLYGISHPVFTTIVDKLKPHIALSNLSLPSDYAVAMVLSRLCHGLSAKTLAARFSLE 180
            WRSLYG+S+PVF T+VDKLKP I  SNLSLP+DYAVAMVLSRL HG SAKTLA+R+SL+
Sbjct: 121 RWRSLYGLSYPVFITVVDKLKPFITASNLSLPADYAVAMVLSRLAHGCSAKTLASRYSLD 180

Query: 181 PYLVSKITNMVTRLLATKLYAEFIKIPVSRRRLIETTQAFEKLTSLPNMCGAIDSSPIKL 240
           PYL+SKITNMVTRLLATKLY EFIKIPV +RRLIETTQ FE+LTSLPN+CGAIDS+P+KL
Sbjct: 181 PYLISKITNMVTRLLATKLYPEFIKIPVGKRRLIETTQGFEELTSLPNICGAIDSTPVKL 240

Query: 241 RRLPADQSISTNYNCRFGYPSVLLQVVADNKKIFWDVCVKAPGGSDDASHFRDSLMYHRL 300
           RR     +    Y C++GY +VLLQVVAD+KKIFWDVCVKAPGG DD+SHFRDSL+Y RL
Sbjct: 241 RR-RTKLNPRNIYGCKYGYDAVLLQVVADHKKIFWDVCVKAPGGEDDSSHFRDSLLYKRL 300

Query: 301 TSGDIVWDKVINVRGHHVRPYIVGDWGYPLLSFLLTPFSPNGIGTPAQNLFDGMLMKGRS 360
           TSGDIVW+KVIN+RGHHVRPYIVGDW YPLLSFL+TPFSPNG GTP +NLFDGMLMKGRS
Sbjct: 301 TSGDIVWEKVINIRGHHVRPYIVGDWCYPLLSFLMTPFSPNGSGTPPENLFDGMLMKGRS 360

Query: 361 VVVDAIGLLKARWKILQDLNVGLSHAPQTIVACCVLHNLCQIAKEPEPEPLKDPEETGPA 420
           VVV+AIGLLKARWKILQ LNVG++HAPQTIVACCVLHNLCQIA+EPEPE  KDP+E G  
Sbjct: 361 VVVEAIGLLKARWKILQSLNVGVNHAPQTIVACCVLHNLCQIAREPEPEIWKDPDEAGTP 420

Query: 421 PDILDSEKSLCYYGESVRQALADDLHHRLSSR 453
             +L+SE+   YYGES+RQALA+DLH RLSSR
Sbjct: 421 ARVLESERQFYYYGESLRQALAEDLHQRLSSR 446

BLAST of CmaCh02G004410 vs. TAIR 10
Match: AT5G12010.1 (unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 108.2 bits (269), Expect = 1.7e-23
Identity = 83/310 (26.77%), Postives = 150/310 (48.39%), Query Frame = 0

Query: 113 LEAPLRDAHWRSLYGISHPVFTTIVDKLKPHIALSNLSL----PSDYAVAMVLSRLCHGL 172
           L+ P  D  ++  + +S   F  I D+L   +A  + +L    P    VA+ + RL  G 
Sbjct: 168 LDYPEED--FKKAFRMSKSTFELICDELNSAVAKEDTALRNAIPVRQRVAVCIWRLATGE 227

Query: 173 SAKTLAARFSLEPYLVSKITNMVTRLLATKLYAEFIKIPVSRRRLIETTQAFEKLTSLPN 232
             + ++ +F L      K+   V + +   L  ++++ P     L    + FE ++ +PN
Sbjct: 228 PLRLVSKKFGLGISTCHKLVLEVCKAIKDVLMPKYLQWP-DDESLRNIRERFESVSGIPN 287

Query: 233 MCGAIDSSPIKLRRLPADQSISTNYNCRF-------GYPSVLLQVVADNKKIFWDVCVKA 292
           + G++ ++ I +  +    S+++ +N R         Y S+ +Q V + K +F D+C+  
Sbjct: 288 VVGSMYTTHIPI--IAPKISVASYFNKRHTERNQKTSY-SITIQAVVNPKGVFTDLCIGW 347

Query: 293 PGGSDDASHFRDSLMYHRLTSGDIVWDKVINVRGHHVRPYIVGDWGYPLLSFLLTPFSPN 352
           PG   D      SL+Y R  +G +       ++G     ++ G  G+PLL ++L P++  
Sbjct: 348 PGSMPDDKVLEKSLLYQRANNGGL-------LKG----MWVAGGPGHPLLDWVLVPYTQQ 407

Query: 353 GIGTPAQNLFDGMLMKGRSVVVDAIGLLKARWKILQD-LNVGLSHAPQTIVACCVLHNLC 410
            + T  Q+ F+  + + + V  +A G LK RW  LQ    V L   P  + ACCVLHN+C
Sbjct: 408 NL-TWTQHAFNEKMSEVQGVAKEAFGRLKGRWACLQKRTEVKLQDLPTVLGACCVLHNIC 459

BLAST of CmaCh02G004410 vs. TAIR 10
Match: AT3G63270.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 87.4 bits (215), Expect = 3.1e-17
Identity = 89/315 (28.25%), Postives = 141/315 (44.76%), Query Frame = 0

Query: 141 KPHIALSNLS---LPSDYAVAMVLSRLCHGLSAKTLAARFSLEPYLVSKITNMVTRLLAT 200
           +P   L N+    L  +  VA+ L RL  G S  ++ A F +    VS++T      L  
Sbjct: 90  RPPSGLINIEGRLLSVEKQVAIALRRLASGDSQVSVGAAFGVGQSTVSQVTWRFIEALEE 149

Query: 201 KLYAEFIKIPVSRRRLIETTQAFEKLTSLPNMCGAIDSSPIKLRRLPADQSISTNYNCRF 260
           +     ++ P S  R+ E    FE++  LPN CGAID++ I +  LPA Q+     +   
Sbjct: 150 RA-KHHLRWPDS-DRIEEIKSKFEEMYGLPNCCGAIDTTHI-IMTLPAVQASDDWCDQEK 209

Query: 261 GYPSVLLQVVADNKKIFWDVCVKAPGGSDDASHFRDSLMYHRLTSGDIVWDKVINV-RGH 320
            Y S+ LQ V D++  F ++    PGG   +   + S  +    +  I+      + +G 
Sbjct: 210 NY-SMFLQGVFDHEMRFLNMVTGWPGGMTVSKLLKFSGFFKLCENAQILDGNPKTLSQGA 269

Query: 321 HVRPYIVGDWGYPLLSFLLTPFSPNGIGTPAQNL--FDGMLMKGRSVVVDAIGLLKARWK 380
            +R Y+VG   YPLL +L+TP   +    P+ ++  F+    K RSV   A   LK  W+
Sbjct: 270 QIREYVVGGISYPLLPWLITPHDSD---HPSDSMVAFNERHEKVRSVAATAFQQLKGSWR 329

Query: 381 ILQDL--NVGLSHAPQTIVACCVLHNLCQIAKE--PEPEPLKDPEETGPAPDILDSEKSL 440
           IL  +         P  I+ CC+LHN+     +   E  PL    ++G A       + L
Sbjct: 330 ILSKVMWRPDRRKLPSIILVCCLLHNIIIDCGDYLQEDVPLSGHHDSGYADRYCKQTEPL 389

Query: 441 CYYGESVRQALADDL 446
              G  +R  L + L
Sbjct: 390 ---GSELRGCLTEHL 394

BLAST of CmaCh02G004410 vs. TAIR 10
Match: AT3G55350.1 (PIF / Ping-Pong family of plant transposases )

HSP 1 Score: 86.7 bits (213), Expect = 5.4e-17
Identity = 105/387 (27.13%), Postives = 162/387 (41.86%), Query Frame = 0

Query: 77  SSPSAASTTTPPPPTSSSSNYSVSAFRAFSTDHIWSLEAPLRDAHWRSLYGISHPVFTTI 136
           +S SAA+          SS+ S+  +  FS         P     + S++ IS   F  I
Sbjct: 30  TSASAAAALNNNDDDDDSSSQSLDWWDGFSRRIYGGSTDP---KTFESVFKISRKTFDYI 89

Query: 137 VDKLKPHIAL--SNLS------LPSDYAVAMVLSRLCHGLSAKTLAARFSLEPYLVSKIT 196
              +K       +N S      L  +  VA+ L RL  G S   +   F +    VS+IT
Sbjct: 90  CSLVKADFTAKPANFSDSNGNPLSLNDRVAVALRRLGSGESLSVIGETFGMNQSTVSQIT 149

Query: 197 NMVTRLLATKLYAEFIKIPVSRRRLIETTQAFEKLTSLPNMCGAIDSSPIKLRRLPADQS 256
                 +  +     +  P    +L E    FEK++ LPN CGAID + I +  LPA + 
Sbjct: 150 WRFVESMEERA-IHHLSWP---SKLDEIKSKFEKISGLPNCCGAIDITHI-VMNLPAVEP 209

Query: 257 ISTNYNCRFGYPSVLLQVVADNKKIFWDVCVKAPGGSDDASHFRDSLMYHRLTSGD-IVW 316
            +  +       S+ LQ V D    F DV    PG  +D    ++S  Y  +  G  +  
Sbjct: 210 SNKVWLDGEKNFSMTLQAVVDPDMRFLDVIAGWPGSLNDDVVLKNSGFYKLVEKGKRLNG 269

Query: 317 DKVINVRGHHVRPYIVGDWGYPLLSFLLTPFSPNGIGTPAQNLFDGMLMKGRSVVVDAIG 376
           +K+       +R YIVGD G+PLL +LLTP+       P Q  F+    +       A+ 
Sbjct: 270 EKLPLSERTELREYIVGDSGFPLLPWLLTPYQGKPTSLP-QTEFNKRHSEATKAAQMALS 329

Query: 377 LLKARWKILQDL--NVGLSHAPQTIVACCVLHNLCQIAKEPEPEPLKDPEETGPAPDILD 436
            LK RW+I+  +      +  P+ I  CC+LHN   I  + E + L D +      D+  
Sbjct: 330 KLKDRWRIINGVMWMPDRNRLPRIIFVCCLLHN---IIIDMEDQTL-DDQPLSQQHDMNY 389

Query: 437 SEKSLCYYGESVRQALADDLHHRLSSR 453
            ++S C   +     L D+L  +L  +
Sbjct: 390 RQRS-CKLADEASSVLRDELSDQLCGK 402

BLAST of CmaCh02G004410 vs. TAIR 10
Match: AT4G29780.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12010.1); Has 945 Blast hits to 944 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 519; Fungi - 43; Plants - 365; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). )

HSP 1 Score: 85.9 bits (211), Expect = 9.2e-17
Identity = 96/368 (26.09%), Postives = 159/368 (43.21%), Query Frame = 0

Query: 61  IASVLSFIASSRPNSPSSPSAASTTTPPPPTSSSSNYSVSAFRAF----STDHIWSLEAP 120
           +A+V+S +AS      +  +  +   P    +S S    S  R +    +TD    +  P
Sbjct: 152 VAAVVSAVASG-----ADTTGLAAPVPTADIASGSGSGPSHRRLWVKERTTDWWDRVSRP 211

Query: 121 -LRDAHWRSLYGISHPVFTTIVDKLKPHIALSNL----SLPSDYAVAMVLSRLCHGLSAK 180
              +  +R  + +S   F  I ++L   +   N     ++P+   V + + RL  G   +
Sbjct: 212 DFPEDEFRREFRMSKSTFNLICEELDTTVTKKNTMLRDAIPAPKRVGVCVWRLATGAPLR 271

Query: 181 TLAARFSLEPYLVSKITNMVTRLLATKLYAEFIKIPVSRRRLIETTQAFEKLTSLPNMCG 240
            ++ RF L      K+   V R +   L  +++  P S   +  T   FE +  +PN+ G
Sbjct: 272 HVSERFGLGISTCHKLVIEVCRAIYDVLMPKYLLWP-SDSEINSTKAKFESVHKIPNVVG 331

Query: 241 AIDSSPI-----KLRRLPADQSISTNYNCRFGYPSVLLQVVADNKKIFWDVCVKAPGG-S 300
           +I ++ I     K+          T  N +  Y S+ +Q V +   IF DVC+  PG  +
Sbjct: 332 SIYTTHIPIIAPKVHVAAYFNKRHTERNQKTSY-SITVQGVVNADGIFTDVCIGNPGSLT 391

Query: 301 DDASHFRDSLMYHRLTSGDIVWDKVINVRGHHVRPYIVGDWGYPLLSFLLTPFSPNGIGT 360
           DD    + SL   R              RG     +IVG+ G+PL  +LL P++   + T
Sbjct: 392 DDQILEKSSLSRQRA------------ARGMLRDSWIVGNSGFPLTDYLLVPYTRQNL-T 451

Query: 361 PAQNLFDGMLMKGRSVVVDAIGLLKARWKILQD-LNVGLSHAPQTIVACCVLHNLCQIAK 413
             Q+ F+  + + + +   A   LK RW  LQ    V L   P  + ACCVLHN+C++ K
Sbjct: 452 WTQHAFNESIGEIQGIATAAFERLKGRWACLQKRTEVKLQDLPYVLGACCVLHNICEMRK 499

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q94K494.4e-1628.25Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 OS=Arabidopsis thaliana OX=... [more]
Q9M2U37.6e-1627.13Protein ALP1-like OS=Arabidopsis thaliana OX=3702 GN=At3g55350 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT3G19120.13.0e-18572.79PIF / Ping-Pong family of plant transposases [more]
AT5G12010.11.7e-2326.77unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, ... [more]
AT3G63270.13.1e-1728.25CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... [more]
AT3G55350.15.4e-1727.13PIF / Ping-Pong family of plant transposases [more]
AT4G29780.19.2e-1726.09unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027806Harbinger transposase-derived nuclease domainPFAMPF13359DDE_Tnp_4coord: 233..398
e-value: 2.4E-17
score: 63.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..94
NoneNo IPR availablePANTHERPTHR22930:SF176NUCLEASE HARBI1-RELATEDcoord: 7..451
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 7..451

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G004410.1CmaCh02G004410.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding