CmaCh02G004090 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G004090
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	ATP-dependent Clp protease proteolytic subunit
Location	Cma_Chr02: 2063992 .. 2067875 (-)
RNA-Seq Expression	CmaCh02G004090
Synteny	CmaCh02G004090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCATAGTCAGTGAAGCTCGAGAACGCAGCAACATTCCCACAAGCTTTGCTCGCCATGGCAGTAGCTTCAGCTTTTACTGCATCTCTCTGTTTCTCTGTCTCTTCGCACAATAGAGCATCATCCGTTCCTCAGCTTTCTCGCCGGTTATACATTTTCTATTCCTGTTTCATTTGCCTAATCCCCTCTGCAACTCTTAAGTTTTTTCCTCTCTTTTCTGGTTCCTTTGTGTAGAAATTCACGCAGGTCGATAGTTTCTGCCATCCCGAGACCGTATGGAGACTCTTCAACAATTGGTAATCGGTTTTCTGCGATTGATGTTTCTGAATCTTTGTATGTGCGGATATGAATGCCCTAATTTTGTAGCGGAGGAATTCATTTTTGCAGGAACTAAGTTGTTCCTACTTTCTCATATCCATTTCACCATGTTTACAACTCGATATCAATTCTCTGATAATTTTTGTTTTTTTCTTTTCTGTATTTATTGATGTACATGATCGAAATTGCACTTATGTGGATGCATTGAATTATGAATATGACTATGTGGACTTCTCTCTCCCTTTTGAAGGATTATCGAGCAAAACAGTTGGGACACCTTTAAACCTTGACGAAGATTTTCTTCACACCAGTACAAGGTTTGCATTGTTCCCCATTTCTTGTTTCTAGCATTTACCGAATGTTTATTTATTGGCATAACCATTTTTTGAAAGGTAATATAATTTGGATTGCATATCTCAAATTGGGATGAATGTAAATTTTTTCTATGCAACACTATCTTTTGTTTAGCATTCCTTTATATTTTACCTTTCTTTTCCCTTAACAAGATATTATGCCTTCGAATTTTATTCCTTTAACCTGCTGAAAGAATTAATCTGATGGGCATTTTCACTTTTGTGCAGTTATGGACCTATAATGGCCAAGAAAGGCAATCCACCAATTATGCCTGCAGTGATGACACCAGGAGGGCCTTTGAATCTCTCTTCTGTGTTATTTAGGAATCGTATCATATTTATTGGTCAACCCATCAACTCTGCCGTTGCACAGCGAGTTATATCACAGCTCGTGACACTAGCAACCATTGATGAGGAGTCGGATATCCTGGTGGGCAAAAACATAAATAAGCCCCCCTTTTTCCCCCTATCTGTTAATCTAGATTTTGATTCTTTGTTTTAAATTTTTCTGTAAGCCTAGTTGTTGACCTTATTAGGTATATCTGAATTGCCCTGGTGGAAGTACGTACTCAATATTAGCAATTTATGATTGCATGTCTTGGGTAAGATTGCAAAACTCTCTCTCCATCTCTCTTACCTTTTTTGTTTAGTTCTTTTAAACCTTATTATTATTTTTTATGTTACTTCTGCATCCACATTTTCAGTTATTTATTTTGATATTGAGGGTCTTTCTGATGCTTCAATGTTCACAAAATCAACGAGCTGTTATGGGGTAGCAATATCTCCTATGCTTCATGCTTTAGTCTTGCATTAGATCATAGTAACTATCATTAGCTATATAAAACATATAATGCATTGTTCTGATTTGGTTTTCTGTTTAGAGCAACCAGCCATCACCTCGTATTAATCTATCTATATTTTGAATATGAAAGGAAGAGGATACTTTTCTCATAAGAGATAATTGACTCATGCTATCAGATAAAGCCTAAGGTTGGCACAGTGTGCTTCGGAGTTGCTGCAAGCCAAGGGGCTCTTCTCCTTGCAGGTGGAGAAAAGGGAATGCGCTATGCTATGCCAAATTCTCGAATTATGATACATCAGCCACAAAGTGGATGTGGGGTATGGCTAAAATTTTATTACAATCTGAGCTTACATTAAAAAGAACATGAGCATGAGAGGAAAAGTGACGGAGAAAAATACATGTTATCCTTTATATTATATTGCAGTCCCTCAATATCAAAATAATCTGTTGTGAGTCTTGATTTGAGCTGTTCCTATGTGTCTGTGCTTTTTCCCTAATGACCAATACTTTTATGGCTGCTTGAACTATTGTGTCATTATAATATTCCCCATTCCAAGTGATTTACTGCCTTGAAGTTTAAGCAAATATTATGCTTTTTGTCTAGTTTTGAAGTGGTCCAATATATATTTGTCTAATATTTCTTCCTCCTACTTCTGGCATCGTGACAAGTGAGAACCAGAAAGAATGAAGTAACCAACGTTCAGTAATAATGAGATGTTTTTGGATGAGTGCAGGGTCATGTGGAAGATGTTAGACGCCAAGTCAATGAAGCAGTTCAATCACGCCATGTTAGTATCTCTTTCTTACTTGGGAAATAAACACTGACCATTGGATTTGACATTGCCTTGGATAATGCTTGCCGAGCCTTTGGTTCATTATGTTCTTGCCCGTTGCAACAAGAATCTAAAACTAAAAATTATTATAACTTAGAACTAATGAGAAATCGTTTTACCATATATGGAGCTTTTAACTGATGCTAAACCGAACACTACTGTGCAAGTAGGTGGTGAGCCAGTAGATTCACCATAGGTGTAATTGCTGAGTCATAATATTTACAAAATTATCTGGTCTGCCGTTTGAGAAGGATGTGACAATTGCAAATGTAGCTATCTTCATCATCTTTAGGAGGTAGAAATTGAAACTATGTAGACGAAAATATAATTCATGAAATTTGAAGGGATTATTTTATTTATATTTAAGCATATTAGAAAGGTCGAGTCCTCTCCAACAAAAGTTGATTGAGTTGCAGTCTTTGGCCAACCCAAAAATGGAGCTTAGGAAAATGAGTTCAAAATTTTAGTGTGGTCGCCTACTTAAGATATATTGATTTTACCCGTTGCTTTAAAACCAAATATCGTAGGTTTTGATGGTTGTCTCATGACATTCATAGATGTCAAGAAATGGAACAGTGCGAAACTTTTATAACTAAAAGCTACTGCATTGCTGTGTTTGTGAGCTTCCTTTCACTGTGATCTTTGCACTTTGCAGTCAGATTTGGTGCAGTATTTGGTTTCATTATTCATTAATCATTTGATCATTTCATTGTTCCCTGGATTTATTGTTACAGAAAGTTGACATGATGTATGCTGCATTTACTGGCCAACCATTAGAGAAAGTACAACAATACACGGAGAGGGATCGGTTTTTGTCTGTTTCTGAGGTAACAATGTGCAGTGTTTAGTGAATGGATTGAAGTTAATTTTTTTTTTTTTTTTTTTTCCATCTGTCTCAAAAATGAGAAAGGATAATAATGATGTAGGGAGTAAGTTAATTAAAAATAACTTTTTTCGGGATCATACTGTATGATAAAATCTCTTCCTCGACATTGGAATATCCGATACATGACTCGAACTCCTGTGAACTACTGCAACAAAGATAAGAAACAGAATACTGAAACTTCAAAAAAAATTTGCCTTCTCTTGTAGGCTTTGGAGTTTGGGCTTATCGACGGTGTGCTCGAAACAGAATACTGAGTTTGGATTTGGCGAACTCTGATCATTCATCAGCTATATGTGCACTATACAGTGCTTTGATTATGCAGAACTTAACTTCTGAATGGGGCTCATCCATGCTTTGATACAGAACAATCAAATTTTCAGGCACGTGCATCTTTTCACTGGTAAACTCTCAAATCCTCCGAATCAATGCACATGAGCTGTTGTTTGAGAACACAATGATTTATTTGCAGCCAAGTCGATATTTAATGCCATTCTTGTCAAAATTCCTGTTCTTCAAATTGTCTTCTTGGACTGTCACCTTGGCTAGGGCCTGAACATGATTAGAGTATACTGAAATCATGTTTGAAAGCTACGGTCAGATTTAAGATTGTCTTTTTAAATAAGACTACTTTGAACTGCATAATACCTTACTATCTACACTGTTTCTGTCTATTAAATATATTGTCATAAATAA

mRNA sequence

TTTCATAGTCAGTGAAGCTCGAGAACGCAGCAACATTCCCACAAGCTTTGCTCGCCATGGCAGTAGCTTCAGCTTTTACTGCATCTCTCTGTTTCTCTGTCTCTTCGCACAATAGAGCATCATCCGTTCCTCAGCTTTCTCGCCGAAATTCACGCAGGTCGATAGTTTCTGCCATCCCGAGACCGTATGGAGACTCTTCAACAATTGGATTATCGAGCAAAACAGTTGGGACACCTTTAAACCTTGACGAAGATTTTCTTCACACCAGTACAAGTTATGGACCTATAATGGCCAAGAAAGGCAATCCACCAATTATGCCTGCAGTGATGACACCAGGAGGGCCTTTGAATCTCTCTTCTGTGTTATTTAGGAATCGTATCATATTTATTGGTCAACCCATCAACTCTGCCGTTGCACAGCGAGTTATATCACAGCTCGTGACACTAGCAACCATTGATGAGGAGTCGGATATCCTGGTATATCTGAATTGCCCTGGTGGAAGTACGTACTCAATATTAGCAATTTATGATTGCATGTCTTGGATAAAGCCTAAGGTTGGCACAGTGTGCTTCGGAGTTGCTGCAAGCCAAGGGGCTCTTCTCCTTGCAGGTGGAGAAAAGGGAATGCGCTATGCTATGCCAAATTCTCGAATTATGATACATCAGCCACAAAGTGGATGTGGGGGTCATGTGGAAGATGTTAGACGCCAAGTCAATGAAGCAGTTCAATCACGCCATAAAGTTGACATGATGTATGCTGCATTTACTGGCCAACCATTAGAGAAAGTACAACAATACACGGAGAGGGATCGGTTTTTGTCTGTTTCTGAGGCTTTGGAGTTTGGGCTTATCGACGGTGTGCTCGAAACAGAATACTGAGTTTGGATTTGGCGAACTCTGATCATTCATCAGCTATATGTGCACTATACAGTGCTTTGATTATGCAGAACTTAACTTCTGAATGGGGCTCATCCATGCTTTGATACAGAACAATCAAATTTTCAGGCACGTGCATCTTTTCACTGGTAAACTCTCAAATCCTCCGAATCAATGCACATGAGCTGTTGTTTGAGAACACAATGATTTATTTGCAGCCAAGTCGATATTTAATGCCATTCTTGTCAAAATTCCTGTTCTTCAAATTGTCTTCTTGGACTGTCACCTTGGCTAGGGCCTGAACATGATTAGAGTATACTGAAATCATGTTTGAAAGCTACGGTCAGATTTAAGATTGTCTTTTTAAATAAGACTACTTTGAACTGCATAATACCTTACTATCTACACTGTTTCTGTCTATTAAATATATTGTCATAAATAA

Coding sequence (CDS)

ATGGCAGTAGCTTCAGCTTTTACTGCATCTCTCTGTTTCTCTGTCTCTTCGCACAATAGAGCATCATCCGTTCCTCAGCTTTCTCGCCGAAATTCACGCAGGTCGATAGTTTCTGCCATCCCGAGACCGTATGGAGACTCTTCAACAATTGGATTATCGAGCAAAACAGTTGGGACACCTTTAAACCTTGACGAAGATTTTCTTCACACCAGTACAAGTTATGGACCTATAATGGCCAAGAAAGGCAATCCACCAATTATGCCTGCAGTGATGACACCAGGAGGGCCTTTGAATCTCTCTTCTGTGTTATTTAGGAATCGTATCATATTTATTGGTCAACCCATCAACTCTGCCGTTGCACAGCGAGTTATATCACAGCTCGTGACACTAGCAACCATTGATGAGGAGTCGGATATCCTGGTATATCTGAATTGCCCTGGTGGAAGTACGTACTCAATATTAGCAATTTATGATTGCATGTCTTGGATAAAGCCTAAGGTTGGCACAGTGTGCTTCGGAGTTGCTGCAAGCCAAGGGGCTCTTCTCCTTGCAGGTGGAGAAAAGGGAATGCGCTATGCTATGCCAAATTCTCGAATTATGATACATCAGCCACAAAGTGGATGTGGGGGTCATGTGGAAGATGTTAGACGCCAAGTCAATGAAGCAGTTCAATCACGCCATAAAGTTGACATGATGTATGCTGCATTTACTGGCCAACCATTAGAGAAAGTACAACAATACACGGAGAGGGATCGGTTTTTGTCTGTTTCTGAGGCTTTGGAGTTTGGGCTTATCGACGGTGTGCTCGAAACAGAATACTGA

Protein sequence

MAVASAFTASLCFSVSSHNRASSVPQLSRRNSRRSIVSAIPRPYGDSSTIGLSSKTVGTPLNLDEDFLHTSTSYGPIMAKKGNPPIMPAVMTPGGPLNLSSVLFRNRIIFIGQPINSAVAQRVISQLVTLATIDEESDILVYLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTGQPLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY

Homology

[Close]

BLAST of CmaCh02G004090 vs. ExPASy Swiss-Prot
Match: Q9SAA2 (ATP-dependent Clp protease proteolytic subunit 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPP6 PE=1 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 1.7e-108
Identity = 199/264 (75.38%), Postives = 228/264 (86.36%), Query Frame = 0


Query: 11  LCFSVSSHN-RASSVPQLSRRNSRRSIVSAIPRPYGDSSTIGLSSKTVGTPLNLDEDFLH 70
           L FS  + N + +S    ++RN  R IVSA+  PYGDS   GLSS   G+P+ +D    +
Sbjct: 12  LSFSSRTRNPKPTSFLSHNQRNPIRRIVSALQSPYGDSLKAGLSSNVSGSPIKID----N 71

Query: 71  TSTSYGPIMAKKGNPPIMPAVMTPGGPLNLSSVLFRNRIIFIGQPINSAVAQRVISQLVT 130
            +  +G I AKKGNPP+MP+VMTPGGPL+LSSVLFRNRIIFIGQPIN+ VAQRVISQLVT
Sbjct: 72  KAPRFGVIEAKKGNPPVMPSVMTPGGPLDLSSVLFRNRIIFIGQPINAQVAQRVISQLVT 131

Query: 131 LATIDEESDILVYLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKG 190
           LA+ID++SDIL+YLNCPGGSTYS+LAIYDCMSWIKPKVGTV FGVAASQGALLLAGGEKG
Sbjct: 132 LASIDDKSDILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVAFGVAASQGALLLAGGEKG 191

Query: 191 MRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTGQPLEKVQQYTE 250
           MRYAMPN+R+MIHQPQ+GCGGHVEDVRRQVNEA+++R K+D MYAAFTGQPLEKVQQYTE
Sbjct: 192 MRYAMPNTRVMIHQPQTGCGGHVEDVRRQVNEAIEARQKIDRMYAAFTGQPLEKVQQYTE 251

Query: 251 RDRFLSVSEALEFGLIDGVLETEY 274
           RDRFLS SEALEFGLIDG+LETEY
Sbjct: 252 RDRFLSASEALEFGLIDGLLETEY 271

[Close]

BLAST of CmaCh02G004090 vs. ExPASy Swiss-Prot
Match: Q59993 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=clpP2 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.2e-42
Identity = 92/200 (46.00%), Postives = 127/200 (63.50%), Query Frame = 0


Query: 76  PIMAKKGN--PPIMPAVMTPGG----PLNLSSVLFRNRIIFIGQPINSAVAQRVISQLVT 135
           P+    GN    ++P V+   G      ++ S L R RIIF+G P++  VA  +++QL+ 
Sbjct: 11  PLSTLGGNNIQSVVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPVDDQVADSIVAQLLF 70

Query: 136 LATIDEESDILVYLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKG 195
           L   D E DI +Y+N PGGS Y+ LAIYD M  I+P V T+CFG+AAS GA LL+GG KG
Sbjct: 71  LDAEDPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGCKG 130

Query: 196 MRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTGQPLEKVQQYTE 255
            R A+P+SRIMIHQP  G  G   ++  Q  E +  + +++ M    TGQP+EK+Q+ TE
Sbjct: 131 KRMALPSSRIMIHQPLGGAQGQAVEIEIQAREILYIKDRLNTMLVEHTGQPMEKLQEDTE 190

Query: 256 RDRFLSVSEALEFGLIDGVL 270
           RD F+S  EA E+GLID V+
Sbjct: 191 RDFFMSAEEAKEYGLIDQVI 210

[Close]

BLAST of CmaCh02G004090 vs. ExPASy Swiss-Prot
Match: Q317Y6 (ATP-dependent Clp protease proteolytic subunit 4 OS=Prochlorococcus marinus (strain MIT 9312) OX=74546 GN=clpP4 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 8.3e-42
Identity = 91/188 (48.40%), Postives = 121/188 (64.36%), Query Frame = 0


Query: 87  MPAVMTPGG----PLNLSSVLFRNRIIFIGQPINSAVAQRVISQLVTLATIDEESDILVY 146
           +P V+   G      ++ S L R RIIF+G  IN  V+  +++QL+ L   D E DI +Y
Sbjct: 31  VPTVIEQSGRGERAFDIYSRLLRERIIFLGSGINDQVSDSLVAQLLFLEAEDPEKDIQIY 90

Query: 147 LNCPGGSTYSILAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNSRIMIH 206
           +N PGGS  + +AIYD M  I P V T+CFGVAAS GA LL+GG KG R A+PNSRIMIH
Sbjct: 91  INSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRIMIH 150

Query: 207 QPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTGQPLEKVQQYTERDRFLSVSEALEF 266
           QP  G  G   ++  Q  E +  +  ++ + A  TGQPLEK+ + TERD FLS SEA+E+
Sbjct: 151 QPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSPSEAVEY 210

Query: 267 GLIDGVLE 271
           GLID V++
Sbjct: 211 GLIDKVIK 218

[Close]

BLAST of CmaCh02G004090 vs. ExPASy Swiss-Prot
Match: P54415 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpP1 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.4e-41
Identity = 87/189 (46.03%), Postives = 124/189 (65.61%), Query Frame = 0


Query: 86  IMPAVMTPGG----PLNLSSVLFRNRIIFIGQPINSAVAQRVISQLVTLATIDEESDILV 145
           ++P V+   G      ++ S L R RIIF+G+P+ S VA R+++QL+ L   D E DI +
Sbjct: 1   MIPIVVEESGRGERAFDIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYL 60

Query: 146 YLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNSRIMI 205
           Y+N PGGS Y  L I+D M+ I+P V TVC G+AAS GA LLA G KG R ++ +SRIMI
Sbjct: 61  YINSPGGSVYDGLGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMI 120

Query: 206 HQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTGQPLEKVQQYTERDRFLSVSEALE 265
           HQP  G  G  +D+  Q NE +  +  ++ + A  TGQPL +++  T+RD F+S SEA+E
Sbjct: 121 HQPLGGAQGQAKDIEIQANEILYIKQNLNEVLAERTGQPLSRIEDDTDRDFFMSASEAVE 180

Query: 266 FGLIDGVLE 271
           +GLID V++
Sbjct: 181 YGLIDRVID 189

[Close]

BLAST of CmaCh02G004090 vs. ExPASy Swiss-Prot
Match: Q5N665 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpP1 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.4e-41
Identity = 87/189 (46.03%), Postives = 124/189 (65.61%), Query Frame = 0


Query: 86  IMPAVMTPGG----PLNLSSVLFRNRIIFIGQPINSAVAQRVISQLVTLATIDEESDILV 145
           ++P V+   G      ++ S L R RIIF+G+P+ S VA R+++QL+ L   D E DI +
Sbjct: 1   MIPIVVEESGRGERAFDIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYL 60

Query: 146 YLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNSRIMI 205
           Y+N PGGS Y  L I+D M+ I+P V TVC G+AAS GA LLA G KG R ++ +SRIMI
Sbjct: 61  YINSPGGSVYDGLGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMI 120

Query: 206 HQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTGQPLEKVQQYTERDRFLSVSEALE 265
           HQP  G  G  +D+  Q NE +  +  ++ + A  TGQPL +++  T+RD F+S SEA+E
Sbjct: 121 HQPLGGAQGQAKDIEIQANEILYIKQNLNEVLAERTGQPLSRIEDDTDRDFFMSASEAVE 180

Query: 266 FGLIDGVLE 271
           +GLID V++
Sbjct: 181 YGLIDRVID 189

[Close]

BLAST of CmaCh02G004090 vs. TAIR 10
Match: AT1G11750.1 (CLP protease proteolytic subunit 6 )

HSP 1 Score: 393.7 bits (1010), Expect = 1.2e-109
Identity = 199/264 (75.38%), Postives = 228/264 (86.36%), Query Frame = 0


Query: 11  LCFSVSSHN-RASSVPQLSRRNSRRSIVSAIPRPYGDSSTIGLSSKTVGTPLNLDEDFLH 70
           L FS  + N + +S    ++RN  R IVSA+  PYGDS   GLSS   G+P+ +D    +
Sbjct: 12  LSFSSRTRNPKPTSFLSHNQRNPIRRIVSALQSPYGDSLKAGLSSNVSGSPIKID----N 71

Query: 71  TSTSYGPIMAKKGNPPIMPAVMTPGGPLNLSSVLFRNRIIFIGQPINSAVAQRVISQLVT 130
            +  +G I AKKGNPP+MP+VMTPGGPL+LSSVLFRNRIIFIGQPIN+ VAQRVISQLVT
Sbjct: 72  KAPRFGVIEAKKGNPPVMPSVMTPGGPLDLSSVLFRNRIIFIGQPINAQVAQRVISQLVT 131

Query: 131 LATIDEESDILVYLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKG 190
           LA+ID++SDIL+YLNCPGGSTYS+LAIYDCMSWIKPKVGTV FGVAASQGALLLAGGEKG
Sbjct: 132 LASIDDKSDILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVAFGVAASQGALLLAGGEKG 191

Query: 191 MRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTGQPLEKVQQYTE 250
           MRYAMPN+R+MIHQPQ+GCGGHVEDVRRQVNEA+++R K+D MYAAFTGQPLEKVQQYTE
Sbjct: 192 MRYAMPNTRVMIHQPQTGCGGHVEDVRRQVNEAIEARQKIDRMYAAFTGQPLEKVQQYTE 251

Query: 251 RDRFLSVSEALEFGLIDGVLETEY 274
           RDRFLS SEALEFGLIDG+LETEY
Sbjct: 252 RDRFLSASEALEFGLIDGLLETEY 271

[Close]

BLAST of CmaCh02G004090 vs. TAIR 10
Match: AT1G11750.2 (CLP protease proteolytic subunit 6 )

HSP 1 Score: 392.5 bits (1007), Expect = 2.8e-109
Identity = 203/278 (73.02%), Postives = 231/278 (83.09%), Query Frame = 0


Query: 11  LCFSVSSHN-RASSVPQLSRRNSRRSIVSAIPRPYGDSSTIGLSSKTVGTPLNLDE---- 70
           L FS  + N + +S    ++RN  R IVSA+  PYGDS   GLSS   G+P+ +D     
Sbjct: 12  LSFSSRTRNPKPTSFLSHNQRNPIRRIVSALQSPYGDSLKAGLSSNVSGSPIKIDNKAPS 71

Query: 71  -------DFLHTSTSY---GPIMAKKGNPPIMPAVMTPGGPLNLSSVLFRNRIIFIGQPI 130
                  + L +ST Y   G I AKKGNPP+MP+VMTPGGPL+LSSVLFRNRIIFIGQPI
Sbjct: 72  SLPLPILNILKSSTVYFIFGVIEAKKGNPPVMPSVMTPGGPLDLSSVLFRNRIIFIGQPI 131

Query: 131 NSAVAQRVISQLVTLATIDEESDILVYLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGVA 190
           N+ VAQRVISQLVTLA+ID++SDIL+YLNCPGGSTYS+LAIYDCMSWIKPKVGTV FGVA
Sbjct: 132 NAQVAQRVISQLVTLASIDDKSDILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVAFGVA 191

Query: 191 ASQGALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAA 250
           ASQGALLLAGGEKGMRYAMPN+R+MIHQPQ+GCGGHVEDVRRQVNEA+++R K+D MYAA
Sbjct: 192 ASQGALLLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVEDVRRQVNEAIEARQKIDRMYAA 251

Query: 251 FTGQPLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 274
           FTGQPLEKVQQYTERDRFLS SEALEFGLIDG+LETEY
Sbjct: 252 FTGQPLEKVQQYTERDRFLSASEALEFGLIDGLLETEY 289

[Close]

BLAST of CmaCh02G004090 vs. TAIR 10
Match: AT1G02560.1 (nuclear encoded CLP protease 5 )

HSP 1 Score: 161.8 bits (408), Expect = 7.9e-40
Identity = 89/208 (42.79%), Postives = 126/208 (60.58%), Query Frame = 0


Query: 62  NLDEDFLHTSTSYGPIMAKKGNPPIMPAVMTPGGPLNLSSVLFRNRIIFIGQPINSAVAQ 121
           ++ +D    S+ Y P  A+   PP M          ++ S LF+ RII  G  ++  +A 
Sbjct: 82  SIRDDLQVPSSPYFPAYAQGQGPPPMVQERFQ----SIISQLFQYRIIRCGGAVDDDMAN 141

Query: 122 RVISQLVTLATIDEESDILVYLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGVAASQGAL 181
            +++QL+ L  +D   DI++Y+N PGGS  + +AI+D M  I+P V TVC G+AAS GA 
Sbjct: 142 IIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAF 201

Query: 182 LLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTGQPL 241
           LL+ G KG RY++PNSRIMIHQP  G  G   D+  Q NE +  +  ++   A  TGQ L
Sbjct: 202 LLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSL 261

Query: 242 EKVQQYTERDRFLSVSEALEFGLIDGVL 270
           EK+ Q T+RD F+S  EA E+GLIDGV+
Sbjct: 262 EKINQDTDRDFFMSAKEAKEYGLIDGVI 285

[Close]

BLAST of CmaCh02G004090 vs. TAIR 10
Match: AT1G66670.1 (CLP protease proteolytic subunit 3 )

HSP 1 Score: 155.2 bits (391), Expect = 7.4e-38
Identity = 75/174 (43.10%), Postives = 112/174 (64.37%), Query Frame = 0


Query: 97  LNLSSVLFRNRIIFIGQPINSAVAQRVISQLVTLATIDEESDILVYLNCPGGSTYSILAI 156
           L+ +++L R RI+F+G  ++   A  VISQL+ L   D E DI +++N PGGS  + + I
Sbjct: 84  LDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGI 143

Query: 157 YDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVR 216
           YD M   K  V TVC G+AAS GA LLA G KG RY MPNS++MIHQP    GG   ++ 
Sbjct: 144 YDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATEMS 203

Query: 217 RQVNEAVQSRHKVDMMYAAFTGQPLEKVQQYTERDRFLSVSEALEFGLIDGVLE 271
            ++ E +  + K++ +++  TG+P  +++  T+RD FL+  EA E+GLID V++
Sbjct: 204 IRIREMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEAKEYGLIDAVID 257

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BLAST of CmaCh02G004090 vs. TAIR 10
Match: AT5G45390.1 (CLP protease P4 )

HSP 1 Score: 149.8 bits (377), Expect = 3.1e-36
Identity = 72/177 (40.68%), Postives = 112/177 (63.28%), Query Frame = 0


Query: 94  GGPLNLSSVLFRNRIIFIGQPINSAVAQRVISQLVTLATIDEESDILVYLNCPGGSTYSI 153
           G   ++  +L R RI+F+G  I+  VA  ++SQL+ L   D + DI +++N PGGS  + 
Sbjct: 75  GAESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPGGSLSAT 134

Query: 154 LAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVE 213
           +AIYD +  ++  V T+  G+AAS  +++L  G KG R+AMPN+RIMIHQP  G  G   
Sbjct: 135 MAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPLGGASGQAI 194

Query: 214 DVRRQVNEAVQSRHKVDMMYAAFTGQPLEKVQQYTERDRFLSVSEALEFGLIDGVLE 271
           DV  Q  E + +++ V  + A  T +  E+V +  +RDR++S  EA+E+GLIDGV++
Sbjct: 195 DVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLIDGVID 251

The following BLAST results are available for this feature:

BLAST of CmaCh02G004090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SAA2	1.7e-108	75.38	ATP-dependent Clp protease proteolytic subunit 6, chloroplastic OS=Arabidopsis t...	[more]
Q59993	2.2e-42	46.00	ATP-dependent Clp protease proteolytic subunit 2 OS=Synechocystis sp. (strain PC...	[more]
Q317Y6	8.3e-42	48.40	ATP-dependent Clp protease proteolytic subunit 4 OS=Prochlorococcus marinus (str...	[more]
P54415	1.4e-41	46.03	ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus elongatus (str...	[more]
Q5N665	1.4e-41	46.03	ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain AT...	[more]

BLAST of CmaCh02G004090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11750.1	1.2e-109	75.38	CLP protease proteolytic subunit 6	[more]
AT1G11750.2	2.8e-109	73.02	CLP protease proteolytic subunit 6	[more]
AT1G02560.1	7.9e-40	42.79	nuclear encoded CLP protease 5	[more]
AT1G66670.1	7.4e-38	43.10	CLP protease proteolytic subunit 3	[more]
AT5G45390.1	3.1e-36	40.68	CLP protease P4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001907	ATP-dependent Clp protease proteolytic subunit	PRINTS	PR00127	CLPPROTEASEP	coord: 98..113 score: 42.03 coord: 169..186 score: 62.5 coord: 247..266 score: 53.75 coord: 138..158 score: 51.79 coord: 190..209 score: 55.75
IPR001907	ATP-dependent Clp protease proteolytic subunit	HAMAP	MF_00444	ClpP	coord: 86..272 score: 32.878227
IPR001907	ATP-dependent Clp protease proteolytic subunit	CDD	cd07017	S14_ClpP_2	coord: 98..268 e-value: 1.8343E-85 score: 250.822
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 99..271 e-value: 2.2E-65 score: 220.0
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 12..273
None	No IPR available	GENE3D	3.90.226.10		coord: 85..273 e-value: 8.0E-61 score: 207.2
None	No IPR available	PANTHER	PTHR10381:SF8	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 6, CHLOROPLASTIC	coord: 12..273
IPR033135	ClpP, histidine active site	PROSITE	PS00382	CLP_PROTEASE_HIS	coord: 191..204
IPR029045	ClpP/crotonase-like domain superfamily	SUPERFAMILY	52096	ClpP/crotonase	coord: 97..271

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G004090.1	CmaCh02G004090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006515	protein quality control for misfolded or incompletely synthesized proteins
biological_process	GO:0006508	proteolysis
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009368	endopeptidase Clp complex
cellular_component	GO:0009526	plastid envelope
molecular_function	GO:0051117	ATPase binding
molecular_function	GO:0004176	ATP-dependent peptidase activity
molecular_function	GO:0004252	serine-type endopeptidase activity