CmaCh02G004000 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G004000
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	glycine-rich RNA-binding protein-like
Location	Cma_Chr02: 2018144 .. 2019211 (-)
RNA-Seq Expression	CmaCh02G004000
Synteny	CmaCh02G004000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAACAAGGTGCCAATCACACCGCCTTTTAGGTTAACCCTGATTGCAAATAAACCGCGTGAGTTAAATACTGAGCAAACCCTAAAACTAACCCTAGTTATCTTCTGCCCTCTATATAACCAACCCCTTGGTTCATTTCTAACTCATTGTGTTCGTCTTCAGAGGTGTGGATTTGTGTCGATCCCCCTCTTTCTCCTTTCCTTCCTTGTTTGAACCCCTTTCTAGGGTTAGGGTTTTCTGATTTCCATGGCTTCCTCGTCTGTTGAGTACCGTTGCTTCGTGGGTGGCCTTGCGTGGGCCACTGATAATCATGCCTTAGAGAAGGCTTTCTCTTCCTTTGGCGAGATCGTGGAAGCCAAGGTCCGTTTGTTATCGTCGAGATCTGGATTTGTTCCGATTCGGCTTTGACGATCCTAAATCTGATCTGTGACTCTCATCTGTTTTGTGTTACTTTACTACTACTACTACTACTCTCTTGATATGTTACTTTTATTACTCCTTTCATCGGTACGTTTACCTTCATCTTGGTTACAGAGACGAAGAACGATCGATTTTTCTTTAATTTTCATTTTTGTTCTTTTGAATTTTGTTCCAGTTTGCCCCAATTGTTGTGGTTCTGTGACTGATCTTTGTTTTCTTGTGATTATTTTTATCCAGATCGTCAACGACCGTGAAACCGGAAGATCGAGGGGATTTGGATTCGTGACTTTTGTCGATGAAGAGGCCATGAGAAGCGCAATCGAAGCGATGAACGGCCAGAACCTTGATGGACGGAGTATCACCGTTAACGAGGCTCAGCAAAGAGGCGGTGGTGGCGGAGGCGGCGGTGGTTACAACCGTGGTGGAGGTGGTGGTGGTGGCTACGGTGGGCGCCGTGAAGGAGGTGGTGGTGGTGGATACAACCGTGGAGGTGGTGGTTACGGTGGCGGTGGAGGTGGATACGGTGGTGGTGGTGGTTATGGTGGAGGACGTGACCGTGGATACGGCGGCGGTGGTGGTGGTGATGGTGGTCGCTACCAGAGAGGAGGTGGCGGTGGCGGCGGATCTGAAGGAGGGTGGAGAAATTAG

mRNA sequence

CCAAACAAGGTGCCAATCACACCGCCTTTTAGGTTAACCCTGATTGCAAATAAACCGCGTGAGTTAAATACTGAGCAAACCCTAAAACTAACCCTAGTTATCTTCTGCCCTCTATATAACCAACCCCTTGGTTCATTTCTAACTCATTGTGTTCGTCTTCAGAGGTGTGGATTTGTGTCGATCCCCCTCTTTCTCCTTTCCTTCCTTGTTTGAACCCCTTTCTAGGGTTAGGGTTTTCTGATTTCCATGGCTTCCTCGTCTGTTGAGTACCGTTGCTTCGTGGGTGGCCTTGCGTGGGCCACTGATAATCATGCCTTAGAGAAGGCTTTCTCTTCCTTTGGCGAGATCGTGGAAGCCAAGATCGTCAACGACCGTGAAACCGGAAGATCGAGGGGATTTGGATTCGTGACTTTTGTCGATGAAGAGGCCATGAGAAGCGCAATCGAAGCGATGAACGGCCAGAACCTTGATGGACGGAGTATCACCGTTAACGAGGCTCAGCAAAGAGGCGGTGGTGGCGGAGGCGGCGGTGGTTACAACCGTGGTGGAGGTGGTGGTGGTGGCTACGGTGGGCGCCGTGAAGGAGGTGGTGGTGGTGGATACAACCGTGGAGGTGGTGGTTACGGTGGCGGTGGAGGTGGATACGGTGGTGGTGGTGGTTATGGTGGAGGACGTGACCGTGGATACGGCGGCGGTGGTGGTGGTGATGGTGGTCGCTACCAGAGAGGAGGTGGCGGTGGCGGCGGATCTGAAGGAGGGTGGAGAAATTAG

Coding sequence (CDS)

ATGGCTTCCTCGTCTGTTGAGTACCGTTGCTTCGTGGGTGGCCTTGCGTGGGCCACTGATAATCATGCCTTAGAGAAGGCTTTCTCTTCCTTTGGCGAGATCGTGGAAGCCAAGATCGTCAACGACCGTGAAACCGGAAGATCGAGGGGATTTGGATTCGTGACTTTTGTCGATGAAGAGGCCATGAGAAGCGCAATCGAAGCGATGAACGGCCAGAACCTTGATGGACGGAGTATCACCGTTAACGAGGCTCAGCAAAGAGGCGGTGGTGGCGGAGGCGGCGGTGGTTACAACCGTGGTGGAGGTGGTGGTGGTGGCTACGGTGGGCGCCGTGAAGGAGGTGGTGGTGGTGGATACAACCGTGGAGGTGGTGGTTACGGTGGCGGTGGAGGTGGATACGGTGGTGGTGGTGGTTATGGTGGAGGACGTGACCGTGGATACGGCGGCGGTGGTGGTGGTGATGGTGGTCGCTACCAGAGAGGAGGTGGCGGTGGCGGCGGATCTGAAGGAGGGTGGAGAAATTAG

Protein sequence

MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEEAMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGGGGGYGGRREGGGGGGYNRGGGGYGGGGGGYGGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN

Homology

[Close]

BLAST of CmaCh02G004000 vs. ExPASy Swiss-Prot
Match: Q03250 (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-35
Identity = 121/175 (69.14%), Postives = 134/175 (76.57%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MAS  VEYRCFVGGLAWATD+ ALE AF+ +G+++++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGG-----GGGGGYNRGGGGGGGYGGRREGGG 120
           AM+ AIE MNGQ+LDGRSITVNEAQ RG GG     GGGGG  R GGGGG  GG    GG
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 GGGYNRGGGGYGGGGGGY----GGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGG 167
           GGG   GGGGY GGGGGY    GGGG YGGGR  G GG GGG+GG Y   GGGGG
Sbjct: 121 GGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGGGYGGSGGGGG 175

[Close]

BLAST of CmaCh02G004000 vs. ExPASy Swiss-Prot
Match: P49311 (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.0e-34
Identity = 126/175 (72.00%), Postives = 136/175 (77.71%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MAS  VEYRCFVGGLAWATD  +LE AFS FGE+V++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGG----GGGGYGGRREGGGG 120
           +M+ AIE MNGQ+LDGRSITVNEAQ RG G GGGG   RGGG    GGGGYGG   GGG 
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGAGGGG---RGGGGGYRGGGGYGG--GGGGY 120

Query: 121 GGYNRGGGGYGGGGGGY----GGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGG 168
           GG  R GGGY GGGGGY    GGGGGYGGG  R  GG GGG+GG Y  GGGGGGG
Sbjct: 121 GGGRREGGGYSGGGGGYSSRGGGGGGYGGGGRRDGGGYGGGEGGGY--GGGGGGG 168

[Close]

BLAST of CmaCh02G004000 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.0e-34
Identity = 118/186 (63.44%), Postives = 136/186 (73.12%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MA++ VEYRCFVGGLAWAT+N  LE+AF++FG+++++K++ DRETGRSRGFGFVTF  E+
Sbjct: 1   MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQ 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGGGGGYGGRREGGGGGGYN 120
           +M  AIE MNG+ LDGR+ITVN+AQ RGGGGGGGG     GGGGGGYGGR          
Sbjct: 61  SMLDAIENMNGKELDGRNITVNQAQSRGGGGGGGG----YGGGGGGYGGRE--------- 120

Query: 121 RGGGGYGGGGGGYG----GGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGG----- 175
             GGGYGGGGGGYG    GGGGYGGG   GYGGGGGG GGR   GG GGGG  GG     
Sbjct: 121 --GGGYGGGGGGYGGRREGGGGYGGG---GYGGGGGGYGGREGGGGYGGGGGYGGNRGDS 168

[Close]

BLAST of CmaCh02G004000 vs. ExPASy Swiss-Prot
Match: P49310 (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.6e-33
Identity = 123/177 (69.49%), Postives = 135/177 (76.27%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MAS  VEYRCFVGGLAWATD+ ALE AFS +GE++++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGGGGGYGGRREGGGGGGYN 120
           +M+ AIE MNGQ+LDGRSITVNEAQ RG GGGGG     G GGGGGY      GGGGGY 
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGG-----GRGGGGGY----RSGGGGGYG 120

Query: 121 RGGGGYGGGG--GGY-GGGGGYG--GGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGW 173
            GGGGYGGGG  GGY GGGGGY   GG   GYGGGG  DGG  + GG GG G  GGW
Sbjct: 121 GGGGGYGGGGREGGYSGGGGGYSSRGGGGGGYGGGGRRDGG--EGGGYGGSGGGGGW 166

[Close]

BLAST of CmaCh02G004000 vs. ExPASy Swiss-Prot
Match: Q03878 (Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.4e-33
Identity = 113/155 (72.90%), Postives = 126/155 (81.29%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEEAMR 63
           + VEYRCFVGGLAWAT++ +LE+AFS FG+I ++KI+NDRETGRSRGFGFVTF DE++MR
Sbjct: 2   AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGG--GGGGGYGGRREGGGGGGYNR 123
            AIE MNGQ LDGR+ITVNEAQ RG GGGGG     GG  GGGGGYGGRREGGGGGGY  
Sbjct: 62  DAIEGMNGQELDGRNITVNEAQSRGSGGGGGRREGGGGGYGGGGGYGGRREGGGGGGY-- 121

Query: 124 GGGGYGGGGGGYGGGGGYGGGRDRGYGGGGGGDGG 157
           GG   GGGGG  GGGGGYGG R+ G GG GGG GG
Sbjct: 122 GGRREGGGGGYGGGGGGYGGRREGGDGGYGGGGGG 154

[Close]

BLAST of CmaCh02G004000 vs. TAIR 10
Match: AT2G21660.2 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 151.0 bits (380), Expect = 8.9e-37
Identity = 117/166 (70.48%), Postives = 132/166 (79.52%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MAS  VEYRCFVGGLAWATD+ ALE AF+ +G+++++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGGGGGYGGRREGGGGGGYN 120
           AM+ AIE MNGQ+LDGRSITVNEAQ RG GGGGG   +RGGG  GG GGRRE  GGGGY+
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGG---HRGGGSYGGGGGRRE--GGGGYS 120

Query: 121 RGGGGYGGGGGGYGGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGG 167
            GGGGY   G   GGGG YGGGR  G GG GGG+GG Y   GGGGG
Sbjct: 121 GGGGGYSSRG---GGGGSYGGGRREGGGGYGGGEGGGYGGSGGGGG 158

[Close]

BLAST of CmaCh02G004000 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-36
Identity = 121/175 (69.14%), Postives = 134/175 (76.57%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60
           MAS  VEYRCFVGGLAWATD+ ALE AF+ +G+++++KI+NDRETGRSRGFGFVTF DE+
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGG-----GGGGGYNRGGGGGGGYGGRREGGG 120
           AM+ AIE MNGQ+LDGRSITVNEAQ RG GG     GGGGG  R GGGGG  GG    GG
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 GGGYNRGGGGYGGGGGGY----GGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGG 167
           GGG   GGGGY GGGGGY    GGGG YGGGR  G GG GGG+GG Y   GGGGG
Sbjct: 121 GGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGGGYGGSGGGGG 175

[Close]

BLAST of CmaCh02G004000 vs. TAIR 10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 137.9 bits (346), Expect = 7.8e-33
Identity = 117/171 (68.42%), Postives = 130/171 (76.02%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEEAMR 63
           S VEYRCFVGGLAWAT++  L++ FS FG+++++KI+NDRE+GRSRGFGFVTF DE+AMR
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRGGGGGG------GGGYNRGGGGG--GGYGGRREGGG 123
            AIE MNG+ LDGR ITVNEAQ RG GGGG      GGGY  GGGGG  GG GG   GGG
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGG 121

Query: 124 GGGYNRGGGGYGGGGGGYGGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGG 167
           GGGY R  GGYG GGG  GGG GYGGG  R  GG GGGDGG Y  GGGGGG
Sbjct: 122 GGGYERRSGGYGSGGG--GGGRGYGGGGRREGGGYGGGDGGSY--GGGGGG 168

[Close]

BLAST of CmaCh02G004000 vs. TAIR 10
Match: AT4G39260.2 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 129.8 bits (325), Expect = 2.1e-30
Identity = 92/138 (66.67%), Postives = 106/138 (76.81%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEEAMR 63
           S VEYRCFVGGLAWAT++  L++ FS FG+++++KI+NDRE+GRSRGFGFVTF DE+AMR
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGGGGGYGGRREGGGGGGYNRGG 123
            AIE MNG+ LDGR ITVNEAQ RG GGGGGG     GG GGGY      GGGGGY+   
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGGGGGG----RGGSGGGY----RSGGGGGYS--- 121

Query: 124 GGYGGGGGGYGGGGGYGG 142
              GGGGGGY GGGG GG
Sbjct: 122 ---GGGGGGYSGGGGGGG 125

[Close]

BLAST of CmaCh02G004000 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-16
Identity = 97/170 (57.06%), Postives = 118/170 (69.41%), Query Frame = 0


Query: 9   RCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEEAMRSAIEA 68
           + F+GG+A++ D  +L +AF+ +GE+V+ +++ DRETGRSRGFGFVTF   EA  SAI+A
Sbjct: 41  KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100

Query: 69  MNGQNLDGRSITVNEAQQRGGGGG-GGGGYNRGGGGGGGYGGRREGGGGGGYNRGGGGYG 128
           ++G++L GR + VN A  R  GGG GGGGY  GGGG GG GG   GGG GGY  G GGYG
Sbjct: 101 LDGRDLHGRVVKVNYANDRTSGGGFGGGGYGGGGGGYGGSGG--YGGGAGGYG-GSGGYG 160

Query: 129 GGGGGYGG--GGGYGGGRDRGYGG-GGGGDGG--RYQRGGGGGGGSEGGW 173
           GG GGYGG  GGGYGG    GYGG G GG GG      G GGG GS GG+
Sbjct: 161 GGAGGYGGNSGGGYGGNAAGGYGGSGAGGYGGDATGHGGAGGGYGSSGGF 207

The following BLAST results are available for this feature:

BLAST of CmaCh02G004000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q03250	1.6e-35	69.14	Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 ...	[more]
P49311	4.0e-34	72.00	Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
Q99070	4.0e-34	63.44	Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1	[more]
P49310	2.6e-33	69.49	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
Q03878	3.4e-33	72.90	Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1	[more]

BLAST of CmaCh02G004000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21660.2	8.9e-37	70.48	cold, circadian rhythm, and rna binding 2	[more]
AT2G21660.1	1.2e-36	69.14	cold, circadian rhythm, and rna binding 2	[more]
AT4G39260.1	7.8e-33	68.42	cold, circadian rhythm, and RNA binding 1	[more]
AT4G39260.2	2.1e-30	66.67	cold, circadian rhythm, and RNA binding 1	[more]
AT5G61030.1	1.8e-16	57.06	glycine-rich RNA-binding protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..82 e-value: 2.0E-28 score: 110.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 11..79 e-value: 2.6E-23 score: 81.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..86 score: 19.757713
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..107 e-value: 1.3E-31 score: 111.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..174
None	No IPR available	PANTHER	PTHR48024	GEO13361P1-RELATED	coord: 1..173
None	No IPR available	PANTHER	PTHR48024:SF22	RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED	coord: 1..173
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G004000.1	CmaCh02G004000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0006858	extracellular transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:1990428	miRNA transport
biological_process	GO:0050688	regulation of defense response to virus
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005615	extracellular space
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0030126	COPI vesicle coat
molecular_function	GO:0035198	miRNA binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0035197	siRNA binding
molecular_function	GO:0005198	structural molecule activity
molecular_function	GO:0003676	nucleic acid binding