CmaCh02G003560 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G003560
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionauxin-responsive protein SAUR71-like
LocationCma_Chr02: 1739187 .. 1739645 (-)
RNA-Seq ExpressionCmaCh02G003560
SyntenyCmaCh02G003560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACTGGAGACGGCGAAAAGCAACAATATCCGGCGCATTGTTCGGCTCCGTCATAGGCTACAACACTGGCGCCAGATGGCACGAGTGGCATCCTCCAGAGCACCGCCGTCCGACGTCCCTGCCGGTCACATCGCCGTCTGTGTCGGCAGCGAATGTCGGCGGTTCATCGTCCGCGCTACCTTCCTGAACCATCCGATCTTCCAGAAGCTTCTCTCGGAAGCCGAAGAAGAATACGGATTCACTACGCAAGGTGCTCTGGCGCTTCCGTGCGACGAATCGGTATTCGAAGAGGTTCTCCGAGTCGTCGCTCGTTCCGAGTTGCGTAACTCATCGCGAAATCCGAATCTCACAGATTGGCAGAGGCGATGCGATGAAGATATCAGAAAGAACTCCGAGTTTTTAGGCGAATCAAAACCTTTACTGTATGGATTTGCCGATAATAAATCCGTTTGTTGA

mRNA sequence

ATGTCACTGGAGACGGCGAAAAGCAACAATATCCGGCGCATTGTTCGGCTCCGTCATAGGCTACAACACTGGCGCCAGATGGCACGAGTGGCATCCTCCAGAGCACCGCCGTCCGACGTCCCTGCCGGTCACATCGCCGTCTGTGTCGGCAGCGAATGTCGGCGGTTCATCGTCCGCGCTACCTTCCTGAACCATCCGATCTTCCAGAAGCTTCTCTCGGAAGCCGAAGAAGAATACGGATTCACTACGCAAGGTGCTCTGGCGCTTCCGTGCGACGAATCGGTATTCGAAGAGGTTCTCCGAGTCGTCGCTCGTTCCGAGTTGCGTAACTCATCGCGAAATCCGAATCTCACAGATTGGCAGAGGCGATGCGATGAAGATATCAGAAAGAACTCCGAGTTTTTAGGCGAATCAAAACCTTTACTGTATGGATTTGCCGATAATAAATCCGTTTGTTGA

Coding sequence (CDS)

ATGTCACTGGAGACGGCGAAAAGCAACAATATCCGGCGCATTGTTCGGCTCCGTCATAGGCTACAACACTGGCGCCAGATGGCACGAGTGGCATCCTCCAGAGCACCGCCGTCCGACGTCCCTGCCGGTCACATCGCCGTCTGTGTCGGCAGCGAATGTCGGCGGTTCATCGTCCGCGCTACCTTCCTGAACCATCCGATCTTCCAGAAGCTTCTCTCGGAAGCCGAAGAAGAATACGGATTCACTACGCAAGGTGCTCTGGCGCTTCCGTGCGACGAATCGGTATTCGAAGAGGTTCTCCGAGTCGTCGCTCGTTCCGAGTTGCGTAACTCATCGCGAAATCCGAATCTCACAGATTGGCAGAGGCGATGCGATGAAGATATCAGAAAGAACTCCGAGTTTTTAGGCGAATCAAAACCTTTACTGTATGGATTTGCCGATAATAAATCCGTTTGTTGA

Protein sequence

MSLETAKSNNIRRIVRLRHRLQHWRQMARVASSRAPPSDVPAGHIAVCVGSECRRFIVRATFLNHPIFQKLLSEAEEEYGFTTQGALALPCDESVFEEVLRVVARSELRNSSRNPNLTDWQRRCDEDIRKNSEFLGESKPLLYGFADNKSVC
Homology
BLAST of CmaCh02G003560 vs. ExPASy Swiss-Prot
Match: Q9SA49 (Auxin-responsive protein SAUR41 OS=Arabidopsis thaliana OX=3702 GN=SAUR41 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.8e-12
Identity = 38/94 (40.43%), Postives = 51/94 (54.26%), Query Frame = 0

Query: 40  VPAGHIAVCVGSECRRFIVRATFLNHPIFQKLLSEAEEEYGFTTQGALALPCDESVFEEV 99
           VPAGH+ V VG E  RF+V A  +NHPIF  LL+ + +EYG+  +G L +PC   VFE V
Sbjct: 54  VPAGHVPVYVGEEMERFVVSAELMNHPIFVGLLNRSAQEYGYAQKGVLHIPCHVIVFERV 113

Query: 100 LRVVARSELRNSSRNPNLTDWQRRCDEDIRKNSE 134
           +  +       S    NL       DE I + +E
Sbjct: 114 VETLRLGGFEGSGDLENLVASLLSGDELIPETTE 147

BLAST of CmaCh02G003560 vs. ExPASy Swiss-Prot
Match: O64538 (Auxin-responsive protein SAUR40 OS=Arabidopsis thaliana OX=3702 GN=SAUR40 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.5e-12
Identity = 35/95 (36.84%), Postives = 53/95 (55.79%), Query Frame = 0

Query: 6   AKSNNIRRIVRLRHRLQHWRQMARVASSRAPPSDVPAGHIAVCVGSECRRFIVRATFLNH 65
           + S N  R   + H    +     +       S VP+GH+ V VG +  RF+V A  LNH
Sbjct: 14  SSSCNRNRSGDIHHPTSTYSSSVFLVKRATVASSVPSGHVPVNVGEDKERFVVSAELLNH 73

Query: 66  PIFQKLLSEAEEEYGFTTQGALALPCDESVFEEVL 101
           P+F  LL+ + +EYG+T +G L +PC+  VFE+V+
Sbjct: 74  PVFVGLLNRSAQEYGYTQKGVLHIPCNVFVFEQVV 108

BLAST of CmaCh02G003560 vs. ExPASy Swiss-Prot
Match: O65695 (Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.5e-12
Identity = 33/67 (49.25%), Postives = 41/67 (61.19%), Query Frame = 0

Query: 37  PSDVPAGHIAVCVGSECRRFIVRATFLNHPIFQKLLSEAEEEYGFTTQGALALPCDESVF 96
           P DVP GH  V VG    R+IV  +FL HP FQ LL  AEEE+GF     L +PCDE VF
Sbjct: 40  PLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQRAEEEFGFDHDMGLTIPCDELVF 99

Query: 97  EEVLRVV 104
           + +  ++
Sbjct: 100 QTLTSMI 106

BLAST of CmaCh02G003560 vs. ExPASy Swiss-Prot
Match: Q9SGU2 (Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana OX=3702 GN=SAUR71 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.5e-12
Identity = 40/96 (41.67%), Postives = 53/96 (55.21%), Query Frame = 0

Query: 11  IRRIVRLRHRLQHWRQMARVASSRA------PPSDVPAGHIAVCVGSECRRFIVRATFLN 70
           IRR+ R+    Q+   + R  S R         S VP GH+ V VG E  RF+V A  LN
Sbjct: 5   IRRLSRVADSTQY--SLLRSESQRGRTKKEKHKSWVPEGHVPVYVGHEMERFVVNAELLN 64

Query: 71  HPIFQKLLSEAEEEYGFTTQGALALPCDESVFEEVL 101
           HP+F  LL ++ +EYG+  QG L +PC   VFE +L
Sbjct: 65  HPVFVALLKQSAQEYGYEQQGVLRIPCHVLVFERIL 98

BLAST of CmaCh02G003560 vs. ExPASy Swiss-Prot
Match: Q9LTV3 (Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana OX=3702 GN=SAUR72 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.5e-12
Identity = 31/68 (45.59%), Postives = 43/68 (63.24%), Query Frame = 0

Query: 33  SRAPPSDVPAGHIAVCVGSECRRFIVRATFLNHPIFQKLLSEAEEEYGFTTQGALALPCD 92
           S+   S VP GH+ V VG E  RF+V A  LNHP+F  LL+ + +EYG+  +G L +PC 
Sbjct: 43  SKKQTSSVPEGHVPVYVGDEMERFVVSAELLNHPVFIGLLNRSAQEYGYEQKGVLQIPCH 102

Query: 93  ESVFEEVL 101
             VFE ++
Sbjct: 103 VLVFERIM 110

BLAST of CmaCh02G003560 vs. TAIR 10
Match: AT1G19840.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 151.0 bits (380), Expect = 7.8e-37
Identity = 79/150 (52.67%), Postives = 105/150 (70.00%), Query Frame = 0

Query: 1   MSLETAKSNNIRRIVRLRHRLQHWRQMARVAS-SRAPPSDVPAGHIAVCVGSECRRFIVR 60
           M+    K + IR IVRLR  L+ WR  AR++S SR  PSDVP+GH+AVCVGS CRRF+VR
Sbjct: 1   MAGSLVKCSKIRHIVRLRQMLRRWRNKARLSSVSRCVPSDVPSGHVAVCVGSGCRRFVVR 60

Query: 61  ATFLNHPIFQKLLSEAEEEYGFTTQGALALPCDESVFEEVLRVVARSELRNSSRNPNLTD 120
           A++LNHPI   LL +AEEE+GF  QG L +PC+ESVFEE +R ++RS+   SSR     D
Sbjct: 61  ASYLNHPIISNLLVQAEEEFGFANQGPLVIPCEESVFEEAIRFISRSDSSRSSRFTCPDD 120

Query: 121 WQRRCDEDIRKNS--EFLGESKPLLYGFAD 148
            Q +C+  I+  S  + + ES+PLL+G A+
Sbjct: 121 LQ-KCNGGIKIKSKLDLMIESRPLLHGVAE 149

BLAST of CmaCh02G003560 vs. TAIR 10
Match: AT1G75590.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 147.9 bits (372), Expect = 6.6e-36
Identity = 75/144 (52.08%), Postives = 99/144 (68.75%), Query Frame = 0

Query: 7   KSNNIRRIVRLRHRLQHWRQMARVAS--SRAPPSDVPAGHIAVCVGSECRRFIVRATFLN 66
           K + IR IVRLR  L+ WR  AR++S  SR  PSDVP+GH+AV VGS CRRF+VRAT+LN
Sbjct: 7   KCSKIRHIVRLRQMLRRWRDQARMSSSFSRCVPSDVPSGHVAVYVGSSCRRFVVRATYLN 66

Query: 67  HPIFQKLLSEAEEEYGFTTQGALALPCDESVFEEVLRVVARSELRNSSRNPNLTDWQRRC 126
           HP+ + LL +AEEE+GF  QG L +PC+ESVFEE +R ++RS+   S R     D+Q+ C
Sbjct: 67  HPVLRNLLVQAEEEFGFVNQGPLVIPCEESVFEESIRFISRSDSTRSRRFTCPDDFQKNC 126

Query: 127 D-EDIRKNSEFLGESKPLLYGFAD 148
               IR   +   ES+PLL+G  +
Sbjct: 127 HVVGIRSKLDLWIESRPLLHGVTE 150

BLAST of CmaCh02G003560 vs. TAIR 10
Match: AT4G34750.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 135.6 bits (340), Expect = 3.4e-32
Identity = 75/152 (49.34%), Postives = 100/152 (65.79%), Query Frame = 0

Query: 7   KSNNIRRIVRLRHRLQHWRQMARVASSRAPP-SDVPAGHIAVCVGSECRRFIVRATFLNH 66
           K+N I  +VR+R  L+ W++ A + SS   P SDVP GH+AV VG   RR++VRA  LNH
Sbjct: 3   KNNKIGSVVRIRQMLKQWQKKAHIGSSNNDPVSDVPPGHVAVSVGENRRRYVVRAKHLNH 62

Query: 67  PIFQKLLSEAEEEYGFTTQGALALPCDESVFEEVLRVVARSELRNSSRNPN-----LTDW 126
           PIF++LL+EAEEEYGF   G LA+PCDES+FE+++ +V R E  +SS   N     L D 
Sbjct: 63  PIFRRLLAEAEEEYGFANVGPLAIPCDESLFEDIIAIVTRCESSSSSGRGNPPAATLEDL 122

Query: 127 QRRCDEDIRKNSEFLGESKPLLYGFADNKSVC 153
           +R     + KN+    ES+PLL G A+ KSVC
Sbjct: 123 RRCSHVGLAKNNV---ESRPLLPGIAE-KSVC 150

BLAST of CmaCh02G003560 vs. TAIR 10
Match: AT4G34750.2 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 135.6 bits (340), Expect = 3.4e-32
Identity = 75/152 (49.34%), Postives = 100/152 (65.79%), Query Frame = 0

Query: 7   KSNNIRRIVRLRHRLQHWRQMARVASSRAPP-SDVPAGHIAVCVGSECRRFIVRATFLNH 66
           K+N I  +VR+R  L+ W++ A + SS   P SDVP GH+AV VG   RR++VRA  LNH
Sbjct: 3   KNNKIGSVVRIRQMLKQWQKKAHIGSSNNDPVSDVPPGHVAVSVGENRRRYVVRAKHLNH 62

Query: 67  PIFQKLLSEAEEEYGFTTQGALALPCDESVFEEVLRVVARSELRNSSRNPN-----LTDW 126
           PIF++LL+EAEEEYGF   G LA+PCDES+FE+++ +V R E  +SS   N     L D 
Sbjct: 63  PIFRRLLAEAEEEYGFANVGPLAIPCDESLFEDIIAIVTRCESSSSSGRGNPPAATLEDL 122

Query: 127 QRRCDEDIRKNSEFLGESKPLLYGFADNKSVC 153
           +R     + KN+    ES+PLL G A+ KSVC
Sbjct: 123 RRCSHVGLAKNNV---ESRPLLPGIAE-KSVC 150

BLAST of CmaCh02G003560 vs. TAIR 10
Match: AT5G10990.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 135.6 bits (340), Expect = 3.4e-32
Identity = 71/142 (50.00%), Postives = 94/142 (66.20%), Query Frame = 0

Query: 7   KSNNIRRIVRLRHRLQHWRQMARVAS-SRAPPSDVPAGHIAVCVGSECRRFIVRATFLNH 66
           K + IR IV+LR  L+ WR  AR++S  R+ PSDVP+GH+AV VG  CRRF+V AT+LNH
Sbjct: 7   KCSKIRHIVKLRQMLRQWRNKARMSSVRRSVPSDVPSGHVAVYVGRSCRRFVVLATYLNH 66

Query: 67  PIFQKLLSEAEEEYGFTTQGALALPCDESVFEEVLRVVARSELRNSSRNPNLTDWQRRCD 126
           PI   LL +AEEE+GF  QG L +PC+ESVFEE +R + R     SSR     D ++   
Sbjct: 67  PILMNLLVKAEEEFGFANQGPLVIPCEESVFEESIRFITR-----SSRFTCTDDLKKNRH 126

Query: 127 EDIRKNSEFLGESKPLLYGFAD 148
             IR   + L ES+PLL+G ++
Sbjct: 127 GGIRSKLDLLMESRPLLHGVSE 143

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SA493.8e-1240.43Auxin-responsive protein SAUR41 OS=Arabidopsis thaliana OX=3702 GN=SAUR41 PE=2 S... [more]
O645386.5e-1236.84Auxin-responsive protein SAUR40 OS=Arabidopsis thaliana OX=3702 GN=SAUR40 PE=2 S... [more]
O656956.5e-1249.25Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 S... [more]
Q9SGU26.5e-1241.67Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana OX=3702 GN=SAUR71 PE=2 S... [more]
Q9LTV36.5e-1245.59Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana OX=3702 GN=SAUR72 PE=1 S... [more]
Match NameE-valueIdentityDescription
AT1G19840.17.8e-3752.67SAUR-like auxin-responsive protein family [more]
AT1G75590.16.6e-3652.08SAUR-like auxin-responsive protein family [more]
AT4G34750.13.4e-3249.34SAUR-like auxin-responsive protein family [more]
AT4G34750.23.4e-3249.34SAUR-like auxin-responsive protein family [more]
AT5G10990.13.4e-3250.00SAUR-like auxin-responsive protein family [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003676Small auxin-up RNAPFAMPF02519Auxin_induciblecoord: 23..102
e-value: 2.4E-28
score: 98.1
NoneNo IPR availablePANTHERPTHR31374:SF183SMALL AUXIN-UP RNA-RELATEDcoord: 7..144
NoneNo IPR availablePANTHERPTHR31374AUXIN-INDUCED PROTEIN-LIKE-RELATEDcoord: 7..144

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G003560.1CmaCh02G003560.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009733 response to auxin