CmaCh02G003480 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G003480
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionauxin-responsive protein SAUR24-like
LocationCma_Chr02: 1690604 .. 1692371 (-)
RNA-Seq ExpressionCmaCh02G003480
SyntenyCmaCh02G003480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATTCGATTGCTATCCTTGGTTCCTCATGCCAAGCAAATCCTAAAGATGCAGTCAGGGTTTACCAAAAGTCAGCTGGATGTGCCAAAAGGCCATGTGGCTGTTTATGTAGGAGAGATTCAAAGAAAGCGGTTTTTGGTTCCAATTTCTTACTTAAATCATCCATCATTCCAAAATCTACTCAGCCATGCAGAGGAGGAGTTTGGCTTCCATCATCCACAGGGGGGTCTAACCATTCCTTGCAAGGAGGATGCCTTCATTGATCTCACCTCTAGATTGCAGGTCTCTTGAAGGATGCAGAAGAAAGGACAATATGCCATTTTTGACAATTTTTTTCCAACTCGTTTACTTTTTGACACATGCTAGAGTGTTGTAGAGTGGGATACCTTCCTGCCTATAAATGAGTTGCATTGTAAAGATACATTTACCGACAGAACTAATGGAAAATAGATCAATTCAGCATCAATTTCTATATCTTATTTTCTGGTGATTTGTGATTGCTAATCTGAGGTTTTGGGGAGAGAGAAAACTTGTTACTAAATTATTATATACCAAAAAAGAAACTGAATAACACATTGATCGGCATCAAACATTCTACAAGTTCATACAGATTTCCCAGAAATCTGTTATATGTTTCAAAGGGTAATATGGGAGAGACGGAGGGAAACGGATTGTGTTTCCAATATCATACTTGAATCATCCTTCATTCCAACCACTGCTTAAACACGCTGAGGAAGAGTTTGTATTCCATCATCCTCAGGTTGTCAAACAAATCCTTGCAAAAAGATGTCTTTCTTGATTTCACTTCTAGATTGGAAGTTTCTTAAAGATGAGGGGAAAGAAAATTTACCAAGTTTTGAAAATTTTCCCTGTTTTCTTGACTCGTTTATGAACTTGGATTAAAATGTTGCAGGAAATCCAAGAACAATTCCTTCCTGAATGTTAATGAATGACACTGATTCTTGCTACTGACATCTGACAAAACAGGCAGAAATTATAGAACGGTCATGATTTAGTGTTGCATTGAAACAGTAAAATTATGACTATCAAATACTTGCCTATGGTAGGGGCCTTAAGTTTCAACTATGAAAAATATGGTTCACTTAAGGGGGATTAAGAAAAGATCAAAATTTATTCAAACCTGTTTATCCTTTTTCTGGTCGTATGAGCATTGTTAGGGAACAGCTAATACACTTTGCATTTTCATGGTCATTCATTTATTCAAGAAAAACCTTTGTGCTCAGCTGAATTCAAGTAAAGTAGCAAGAGCATGGAGATGAAAAACCCAACGAATTCAGGAGAATAAAATTCAAGAAGGGGCACAGTGTTCTTGTAAGAAAATGTGATAGTCTATTTCAATTTTGAATCTCTTTTCTGCTACTCAACATTTACATGTAGAAGCTAACTCTACATTGATGTTCTACATTTAACTATGGGAAAAAATCGAAGGGAATCTGGCAAAACTGTGTGGAGGATTGTTATTCTTCTCTTTCAGGAAGATTGCAGCTTGGATGTCAGATTGATGAAGACATCTTCTCTGCAAGGAATTGTAAGACCTCCACTTGGATGTTTAAATCCAAATTCTTCTTCAGCACAGTTGAGCAAAGCAGAAAAAGAAGGATGGTTTAAGTATGCTATTGGAACTACAAATCTCTCTCTCAATATCTCCCACATAAACTGCAATATGGCCTTTGGGAATGCCACACCGGTTTCTGGAAGAAGCGGTATGCATTTTGACAGCTTGCTTGGCATTGAGGAGAAGTGA

mRNA sequence

ATGGGTATTCGATTGCTATCCTTGGTTCCTCATGCCAAGCAAATCCTAAAGATGCAGTCAGGGTTTACCAAAAGTCAGCTGGATGTGCCAAAAGGCCATGTGGCTGTTTATGTAGGAGAGATTCAAAGAAAGCGGTTTTTGGTTCCAATTTCTTACTTAAATCATCCATCATTCCAAAATCTACTCAGCCATGCAGAGGAGGAGTTTGGCTTCCATCATCCACAGGGGGGTCTAACCATTCCTTGCAAGGAGGATGCCTTCATTGATCTCACCTCTAGATTGCAGGAAGATTGCAGCTTGGATGTCAGATTGATGAAGACATCTTCTCTGCAAGGAATTGTAAGACCTCCACTTGGATGTTTAAATCCAAATTCTTCTTCAGCACAGTTGAGCAAAGCAGAAAAAGAAGGATGGTTTAAGTATGCTATTGGAACTACAAATCTCTCTCTCAATATCTCCCACATAAACTGCAATATGGCCTTTGGGAATGCCACACCGGTTTCTGGAAGAAGCGGTATGCATTTTGACAGCTTGCTTGGCATTGAGGAGAAGTGA

Coding sequence (CDS)

ATGGGTATTCGATTGCTATCCTTGGTTCCTCATGCCAAGCAAATCCTAAAGATGCAGTCAGGGTTTACCAAAAGTCAGCTGGATGTGCCAAAAGGCCATGTGGCTGTTTATGTAGGAGAGATTCAAAGAAAGCGGTTTTTGGTTCCAATTTCTTACTTAAATCATCCATCATTCCAAAATCTACTCAGCCATGCAGAGGAGGAGTTTGGCTTCCATCATCCACAGGGGGGTCTAACCATTCCTTGCAAGGAGGATGCCTTCATTGATCTCACCTCTAGATTGCAGGAAGATTGCAGCTTGGATGTCAGATTGATGAAGACATCTTCTCTGCAAGGAATTGTAAGACCTCCACTTGGATGTTTAAATCCAAATTCTTCTTCAGCACAGTTGAGCAAAGCAGAAAAAGAAGGATGGTTTAAGTATGCTATTGGAACTACAAATCTCTCTCTCAATATCTCCCACATAAACTGCAATATGGCCTTTGGGAATGCCACACCGGTTTCTGGAAGAAGCGGTATGCATTTTGACAGCTTGCTTGGCATTGAGGAGAAGTGA

Protein sequence

MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQNLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRLQEDCSLDVRLMKTSSLQGIVRPPLGCLNPNSSSAQLSKAEKEGWFKYAIGTTNLSLNISHINCNMAFGNATPVSGRSGMHFDSLLGIEEK
Homology
BLAST of CmaCh02G003480 vs. ExPASy Swiss-Prot
Match: Q9FK62 (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.1e-24
Identity = 55/84 (65.48%), Postives = 65/84 (77.38%), Query Frame = 0

Query: 12 AKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQNLLSHAEEEFGF 71
          AK+IL   +G   +    PKG +AVYVGE Q+KR+LVP+SYLN PSFQ LLS +EEEFGF
Sbjct: 10 AKKILSRSTGAGSA---APKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGF 69

Query: 72 HHPQGGLTIPCKEDAFIDLTSRLQ 96
           HP GGLTIPC ED FI++TSRLQ
Sbjct: 70 DHPMGGLTIPCPEDTFINVTSRLQ 90

BLAST of CmaCh02G003480 vs. ExPASy Swiss-Prot
Match: Q9FJG0 (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-23
Identity = 53/79 (67.09%), Postives = 61/79 (77.22%), Query Frame = 0

Query: 17 KMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQNLLSHAEEEFGFHHPQG 76
          K+ S  T +    PKG +AVYVGE Q+KR+LVPISYLN PSFQ LLS +EEEFGF HP G
Sbjct: 12 KILSRSTTAASAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDHPMG 71

Query: 77 GLTIPCKEDAFIDLTSRLQ 96
          GLTIPC ED FI++TSR Q
Sbjct: 72 GLTIPCPEDTFINVTSRFQ 90

BLAST of CmaCh02G003480 vs. ExPASy Swiss-Prot
Match: Q9FJF7 (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana OX=3702 GN=SAUR22 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.6e-23
Identity = 52/79 (65.82%), Postives = 62/79 (78.48%), Query Frame = 0

Query: 17 KMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQNLLSHAEEEFGFHHPQG 76
          K+ S  T +    PKG +AVYVGE Q+KR+LVP+SYLN PSFQ LLS +E+EFGF HP G
Sbjct: 12 KILSRSTAAVSAAPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDEFGFDHPMG 71

Query: 77 GLTIPCKEDAFIDLTSRLQ 96
          GLTIPC ED FI++TSRLQ
Sbjct: 72 GLTIPCHEDTFINVTSRLQ 90

BLAST of CmaCh02G003480 vs. ExPASy Swiss-Prot
Match: Q9FJG1 (Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana OX=3702 GN=SAUR19 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.8e-23
Identity = 52/79 (65.82%), Postives = 62/79 (78.48%), Query Frame = 0

Query: 17 KMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQNLLSHAEEEFGFHHPQG 76
          K+ S  T +    PKG +AVYVGE Q+KR+LVP+SYL+ PSFQ LLS +EEEFGF HP G
Sbjct: 12 KILSRSTAAGSAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFAHPMG 71

Query: 77 GLTIPCKEDAFIDLTSRLQ 96
          GLTIPC ED FI++TSRLQ
Sbjct: 72 GLTIPCPEDTFINVTSRLQ 90

BLAST of CmaCh02G003480 vs. ExPASy Swiss-Prot
Match: Q9FJF6 (Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana OX=3702 GN=SAUR23 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.8e-23
Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = 0

Query: 12 AKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQNLLSHAEEEFGF 71
          AK+IL   +    +    PKG +AVYVGE Q+KR+LVP+SYLN PSFQ LLS +EEEFGF
Sbjct: 10 AKKILSRSAAAVSAP---PKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEEEFGF 69

Query: 72 HHPQGGLTIPCKEDAFIDLTSRL 95
           HP GGLTIPC ED FI++TSRL
Sbjct: 70 DHPMGGLTIPCPEDTFINVTSRL 89

BLAST of CmaCh02G003480 vs. TAIR 10
Match: AT4G38840.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 118.2 bits (295), Expect = 6.8e-27
Identity = 58/97 (59.79%), Postives = 72/97 (74.23%), Query Frame = 0

Query: 1  MGIRLLSLVPHAKQILK----MQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHP 60
          M IR+  ++  +KQIL+    + S  + S LDVPKG++AVYVGE   KRF+VP+SYL+ P
Sbjct: 1  MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query: 61 SFQNLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSR 94
          SFQ+LL  AEEEFGF HP GGLTIPC E+ FIDL SR
Sbjct: 61 SFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLASR 97

BLAST of CmaCh02G003480 vs. TAIR 10
Match: AT4G34810.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 114.4 bits (285), Expect = 9.8e-26
Identity = 59/105 (56.19%), Postives = 76/105 (72.38%), Query Frame = 0

Query: 1   MGIRLLSLVPHAKQILKMQSGFTKSQLD------VPKGHVAVYVG---EIQRKRFLVPIS 60
           MG+   ++    KQILK+ S   +++        VPKGHVAVYVG   E+++KRF+VPIS
Sbjct: 1   MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPIS 60

Query: 61  YLNHPSFQNLLSHAEEEFGFHHPQGGLTIPCKEDAFIDL-TSRLQ 96
           +LNHPSF+  LS AEEEFGF+HP GGLTIPC+E+ F+DL  SRLQ
Sbjct: 61  FLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIASRLQ 105

BLAST of CmaCh02G003480 vs. TAIR 10
Match: AT2G21210.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-25
Identity = 55/95 (57.89%), Postives = 72/95 (75.79%), Query Frame = 0

Query: 1  MGIRLLSLVPHAKQILKMQSGFTKSQLDVPKGHVAVYVGE-IQRKRFLVPISYLNHPSFQ 60
          M IR+  ++  +KQ+LK  S  + + + +PKGH+AVYVGE +Q++RF+VP++YL+HP FQ
Sbjct: 1  MAIRISRVLQSSKQLLKSLS-HSSNNVAIPKGHLAVYVGEMMQKRRFVVPVTYLSHPCFQ 60

Query: 61 NLLSHAEEEFGFHHPQGGLTIPCKEDAFIDLTSRL 95
           LL  AEEEFGF HP GGLTIPC E  FIDL SRL
Sbjct: 61 KLLRKAEEEFGFDHPMGGLTIPCTEQIFIDLASRL 94

BLAST of CmaCh02G003480 vs. TAIR 10
Match: AT5G18080.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 113.2 bits (282), Expect = 2.2e-25
Identity = 55/84 (65.48%), Postives = 65/84 (77.38%), Query Frame = 0

Query: 12 AKQILKMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQNLLSHAEEEFGF 71
          AK+IL   +G   +    PKG +AVYVGE Q+KR+LVP+SYLN PSFQ LLS +EEEFGF
Sbjct: 10 AKKILSRSTGAGSA---APKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGF 69

Query: 72 HHPQGGLTIPCKEDAFIDLTSRLQ 96
           HP GGLTIPC ED FI++TSRLQ
Sbjct: 70 DHPMGGLTIPCPEDTFINVTSRLQ 90

BLAST of CmaCh02G003480 vs. TAIR 10
Match: AT5G18020.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-24
Identity = 53/79 (67.09%), Postives = 61/79 (77.22%), Query Frame = 0

Query: 17 KMQSGFTKSQLDVPKGHVAVYVGEIQRKRFLVPISYLNHPSFQNLLSHAEEEFGFHHPQG 76
          K+ S  T +    PKG +AVYVGE Q+KR+LVPISYLN PSFQ LLS +EEEFGF HP G
Sbjct: 12 KILSRSTTAASAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDHPMG 71

Query: 77 GLTIPCKEDAFIDLTSRLQ 96
          GLTIPC ED FI++TSR Q
Sbjct: 72 GLTIPCPEDTFINVTSRFQ 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FK623.1e-2465.48Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 S... [more]
Q9FJG01.5e-2367.09Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=1 S... [more]
Q9FJF72.6e-2365.82Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana OX=3702 GN=SAUR22 PE=2 S... [more]
Q9FJG15.8e-2365.82Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana OX=3702 GN=SAUR19 PE=2 S... [more]
Q9FJF65.8e-2363.86Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana OX=3702 GN=SAUR23 PE=2 S... [more]
Match NameE-valueIdentityDescription
AT4G38840.16.8e-2759.79SAUR-like auxin-responsive protein family [more]
AT4G34810.19.8e-2656.19SAUR-like auxin-responsive protein family [more]
AT2G21210.11.7e-2557.89SAUR-like auxin-responsive protein family [more]
AT5G18080.12.2e-2565.48SAUR-like auxin-responsive protein family [more]
AT5G18020.11.1e-2467.09SAUR-like auxin-responsive protein family [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003676Small auxin-up RNAPFAMPF02519Auxin_induciblecoord: 13..93
e-value: 4.4E-26
score: 90.9
NoneNo IPR availablePANTHERPTHR31929SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATEDcoord: 1..95
NoneNo IPR availablePANTHERPTHR31929:SF121AUXIN-RESPONSIVE PROTEIN SAUR21-LIKEcoord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G003480.1CmaCh02G003480.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009733 response to auxin