CmaCh02G001720 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G001720
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
Location	Cma_Chr02: 790008 .. 791271 (-)
RNA-Seq Expression	CmaCh02G001720
Synteny	CmaCh02G001720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTCTGATTGCTTTTTCGACCTTGAGCGTGATTTGAGGGCTTTGATGTTTGGTTAGTTGATGAATCGAGCAAATGATTTGAATCCGTGTTTTGCCGATTTAAGTTTTGGCGTCAATGCTCAACATTTCATCTTCTGATGGATGTGACTTTCGATCCTGGAAGGATCTTCTTCAACTTTTCTTTTCCCCACTGTTTTATAGTCAGTTTTCTTGTAGGACAATGTTTTTGTTTTGTTTAAACTGTCCAAAACCAGTTATAGAAACTTGGATTCAAGTAAAATATATTTTACTCGTGATTTTGTTTACAGGTGTCATTGTTTGAGCAATGCTTTTACTATAAAATTAACAAATTCGTAAGCTAAGATACATCGAATTTGATGTAATGTAAGTTCAAATTTTCAATTCTTCTTTGTGAAGATTGACTCTGGAGGATTTGGTAGGTTGGCCATTGTTGTCTCCTTTCCCTTCTGTTTGTCTGTATTTCCCAGATTCTCCATTTGGCCACTGATTTGATTTCTATTTTATTGAGATAATTTAGAAAGATTGATATGACGACATTTTCTTAATTTTACAGAAAGATCTCGTCGTTGTAACTCAATTCATCCATGCTTATCCAACGTTCTTAATCAAAATTAATCAGCGATCCTTTTTACTTTTGTATGATAAACATCAAGCTGTTTTTGATAAATTTCTGGAAAATGATAGTTGAAAATGGGAAGCAAGGCACCAAGCTGGGCTGATCAGTGGGGTTCAGGCAATTACGGAGTCGAAGACGACGATAAGATGGTGGCGAAGAAAGGGAGCGGCAATGGCAGTAGTAGCAAGAAGATGACAGAGGTAAAGGCAGCAGCCTCAGCTGGATTTGTGAAGGCGAAGGCTGTCGCAGCTGTAGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAATGACTCTACAAATTCATGTCTCTAAGCATTGACCATTTTTTCTTTAACTTTCTCTCAAACCCATCTTGTCATCTGATAATTATTTGGTTTCCTACATTTTGTCAAACTCATCAATCGATCTAAAAAAGTAGACAGATTTTTCAGTGAACCAGATTGACAAGTATCATGCCATAAATTCCCATTCTTTACAGCAGACTTTTGAATGACGAAAATGAGTCTACTCGTTTTTCATCAATTAAACTATACATAAAGCTTGCATTTGAAGGTACGAAACAGAGTCCGCTGATGGGGG

mRNA sequence

ATGGTGTCTGATTGCTTTTTCGACCTTGAGCGTGATTTGAGGGCTTTGATGTTTGAAAGATCTCGTCGTTGTAACTCAATTCATCCATGCTTATCCAACTTGAAAATGGGAAGCAAGGCACCAAGCTGGGCTGATCAGTGGGGTTCAGGCAATTACGGAGTCGAAGACGACGATAAGATGGTGGCGAAGAAAGGGAGCGGCAATGGCAGTAGTAGCAAGAAGATGACAGAGGTAAAGGCAGCAGCCTCAGCTGGATTTGTGAAGGCGAAGGCTGTCGCAGCTGTAGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAATGACTCTACAAATTCATGTCTCTAAGCATTGACCATTTTTTCTTTAACTTTCTCTCAAACCCATCTTGTCATCTGATAATTATTTGGTTTCCTACATTTTGTCAAACTCATCAATCGATCTAAAAAAGTAGACAGATTTTTCAGTGAACCAGATTGACAAGTATCATGCCATAAATTCCCATTCTTTACAGCAGACTTTTGAATGACGAAAATGAGTCTACTCGTTTTTCATCAATTAAACTATACATAAAGCTTGCATTTGAAGGTACGAAACAGAGTCCGCTGATGGGGG

Coding sequence (CDS)

ATGGTGTCTGATTGCTTTTTCGACCTTGAGCGTGATTTGAGGGCTTTGATGTTTGAAAGATCTCGTCGTTGTAACTCAATTCATCCATGCTTATCCAACTTGAAAATGGGAAGCAAGGCACCAAGCTGGGCTGATCAGTGGGGTTCAGGCAATTACGGAGTCGAAGACGACGATAAGATGGTGGCGAAGAAAGGGAGCGGCAATGGCAGTAGTAGCAAGAAGATGACAGAGGTAAAGGCAGCAGCCTCAGCTGGATTTGTGAAGGCGAAGGCTGTCGCAGCTGTAGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAATGA

Protein sequence

MVSDCFFDLERDLRALMFERSRRCNSIHPCLSNLKMGSKAPSWADQWGSGNYGVEDDDKMVAKKGSGNGSSSKKMTEVKAAASAGFVKAKAVAAVGAQKVKSGTSVGIKWVKNQYQKKVSK

Homology

[Close]

BLAST of CmaCh02G001720 vs. ExPASy TrEMBL
Match: A0A0A0LR11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418340 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.7e-32
Identity = 81/90 (90.00%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 34  LKMGSKAPSWADQWGSGNYGVEDDD--KMVAKKGSGNGSSSKKMTEVKAAASAGFVKAKA 93
           LKMGSKAPSWADQWGSGNYGVEDDD    V KKGS NG+SSKKM EVKAAASAGFVKAKA
Sbjct: 84  LKMGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKA 143

Query: 94  VAAVGAQKVKSGTSVGIKWVKNQYQKKVSK 122
           VA VGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 144 VATVGAQKVKSGTSVGIKWVKNQYQKKVSK 173

[Close]

BLAST of CmaCh02G001720 vs. ExPASy TrEMBL
Match: A0A5D3DKS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00040 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 5.2e-31
Identity = 79/88 (89.77%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 36  MGSKAPSWADQWGSGNYGVEDDD--KMVAKKGSGNGSSSKKMTEVKAAASAGFVKAKAVA 95
           MGSKAPSWADQWGSGNYGVEDDD    V KKGS NG+SSKKM EVKAAASAGFVKAKAVA
Sbjct: 1   MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60

Query: 96  AVGAQKVKSGTSVGIKWVKNQYQKKVSK 122
            VGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 61  TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88

[Close]

BLAST of CmaCh02G001720 vs. ExPASy TrEMBL
Match: A0A5C7HG95 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020628 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 8.0e-24
Identity = 64/85 (75.29%), Postives = 71/85 (83.53%), Query Frame = 0


Query: 36  MGSKAPSWADQWGSGNYGVEDDDKMVAKKGSGNGSSSKKMTEVKAAASAGFVKAKAVAAV 95
           MGSKAPSWADQWGSG++G E+DD  +  K S +G SSKKM E KAAASAGF KAKA A+V
Sbjct: 1   MGSKAPSWADQWGSGSFGDEEDDNKLVTKKSSSGGSSKKMAEAKAAASAGFDKAKAAASV 60

Query: 96  GAQKVKSGTSVGIKWVKNQYQKKVS 121
           GAQKVKSGTSVG+KWVK QYQKK S
Sbjct: 61  GAQKVKSGTSVGLKWVKKQYQKKSS 85

[Close]

BLAST of CmaCh02G001720 vs. ExPASy TrEMBL
Match: V4UEV4 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017336mg PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.7e-21
Identity = 63/86 (73.26%), Postives = 72/86 (83.72%), Query Frame = 0


Query: 36  MGSKAPSWADQWGSGNYGV-EDDDKMVAKKGSGNGSSSKKMTEVKAAASAGFVKAKAVAA 95
           MGSKAPSWADQWG+G +GV E+DDK+V K  S +G +  K+TEVKAAASAGF KAK+ AA
Sbjct: 1   MGSKAPSWADQWGTGGFGVDEEDDKLVTKNASSSGGN--KITEVKAAASAGFDKAKSAAA 60

Query: 96  VGAQKVKSGTSVGIKWVKNQYQKKVS 121
           VGAQKVK+GTS GIKWVK QYQKK S
Sbjct: 61  VGAQKVKAGTSAGIKWVKKQYQKKGS 84

[Close]

BLAST of CmaCh02G001720 vs. ExPASy TrEMBL
Match: B9IAG0 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G153900 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.8e-20
Identity = 60/86 (69.77%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 36  MGSKAPSWADQWGSGNYGVEDDDKMVAKKGSGNGSSSKKMTEVKAAASAGFVKAKAVAAV 95
           MGSKAP WADQWGSG++  EDD+K +AK G  NG++SKKM  VKAAAS G  KAK     
Sbjct: 1   MGSKAPGWADQWGSGSFSKEDDEKFMAKIGHNNGNASKKMAGVKAAASTGLDKAK----T 60

Query: 96  GAQKVKSGTSVGIKWVKNQYQKKVSK 122
            AQKVKSGTSVGIKWVKN+YQKK SK
Sbjct: 61  AAQKVKSGTSVGIKWVKNKYQKKTSK 82

[Close]

BLAST of CmaCh02G001720 vs. NCBI nr
Match: KAG7034974.1 (hypothetical protein SDJN02_01767, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.5 bits (410), Expect = 2.2e-36
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 34  LKMGSKAPSWADQWGSGNYGVEDDDKMVAKKGSGNGSSSKKMTEVKAAASAGFVKAKAVA 93
           LKMGSKAPSWADQWGSGNYGVEDDDKMVAKKGS NGSSSKKMTEVKAAASAGFVKAKAVA
Sbjct: 89  LKMGSKAPSWADQWGSGNYGVEDDDKMVAKKGSSNGSSSKKMTEVKAAASAGFVKAKAVA 148

Query: 94  AVGAQKVKSGTSVGIKWVKNQYQKKVSK 122
           AVGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 149 AVGAQKVKSGTSVGIKWVKNQYQKKVSK 176

[Close]

BLAST of CmaCh02G001720 vs. NCBI nr
Match: KAG6604861.1 (hypothetical protein SDJN03_02178, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160.2 bits (404), Expect = 1.1e-35
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 34  LKMGSKAPSWADQWGSGNYGVEDDDKMVAKKGSGNGSSSKKMTEVKAAASAGFVKAKAVA 93
           LKMGSKAPSWADQWGSGNYGVEDDDKMVAKKGSGNGSSSKKMTEVKAAASAGFVKAKAVA
Sbjct: 78  LKMGSKAPSWADQWGSGNYGVEDDDKMVAKKGSGNGSSSKKMTEVKAAASAGFVKAKAVA 137

Query: 94  AVGAQKVKSGTSVGIKWVKNQYQKK 119
           AVGAQKVKSGTSVGIKWVKNQYQKK
Sbjct: 138 AVGAQKVKSGTSVGIKWVKNQYQKK 162

[Close]

BLAST of CmaCh02G001720 vs. NCBI nr
Match: KAA0059574.1 (hypothetical protein E6C27_scaffold4837G00020 [Cucumis melo var. makuwa] >KAE8652289.1 hypothetical protein Csa_022099 [Cucumis sativus] >TYK24204.1 hypothetical protein E5676_scaffold27G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 143.7 bits (361), Expect = 1.1e-30
Identity = 79/88 (89.77%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 36  MGSKAPSWADQWGSGNYGVEDDD--KMVAKKGSGNGSSSKKMTEVKAAASAGFVKAKAVA 95
           MGSKAPSWADQWGSGNYGVEDDD    V KKGS NG+SSKKM EVKAAASAGFVKAKAVA
Sbjct: 1   MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60

Query: 96  AVGAQKVKSGTSVGIKWVKNQYQKKVSK 122
            VGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 61  TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88

[Close]

BLAST of CmaCh02G001720 vs. NCBI nr
Match: KAG7010736.1 (hypothetical protein SDJN02_27532, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 138.7 bits (348), Expect = 3.4e-29
Identity = 75/87 (86.21%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 36  MGSKAPSWADQWGSGNYGVEDDDK-MVAKKGSGNGSSSKKMTEVKAAASAGFVKAKAVAA 95
           MGSKAPSWADQWGSG+YGVEDDD   + KKGS NG+SSKKM +VKAAASAGFVKAK+ AA
Sbjct: 1   MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA 60

Query: 96  VGAQKVKSGTSVGIKWVKNQYQKKVSK 122
           VGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 61  VGAQKVKSGTSVGIKWVKNQYQKKVSK 87

[Close]

BLAST of CmaCh02G001720 vs. NCBI nr
Match: KAG6570886.1 (hypothetical protein SDJN03_29801, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 134.8 bits (338), Expect = 4.9e-28
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 36  MGSKAPSWADQWGSGNYGVEDDDK-MVAKKGSGNGSSSKKMTEVKAAASAGFVKAKAVAA 95
           MGSKAPSWADQWGSG+YGVEDDD   + KKGS NG+SSKKM +VKAAASAGFVKAK+ AA
Sbjct: 1   MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA 60

Query: 96  VGAQKVKSGTSVGIKWVKNQYQKKVS 121
           VGAQKVKSGTSVGIKWVKNQYQKK S
Sbjct: 61  VGAQKVKSGTSVGIKWVKNQYQKKKS 86

[Close]

BLAST of CmaCh02G001720 vs. TAIR 10
Match: AT3G48180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19020.1); Has 84 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 5.7e-06
Identity = 33/80 (41.25%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 42  SWADQWGSGNYGVEDDDKMVAKKGSGNGSSSKKMTEVKAAASAGFVKAKAVAAVGAQKVK 101
           SWA+QW S     +         G G G+SSK     K    AG  K KA A+ G +KVK
Sbjct: 5   SWAEQWDSN----QQSSGKTTHGGEGGGASSK----YKEKVGAGLGKTKAAASSGLKKVK 64

Query: 102 SGTSVGIKWVKNQYQKKVSK 122
            GTS+G+ WVK++Y K  +K
Sbjct: 65  IGTSLGLNWVKDKYNKTTTK 76

[Close]

BLAST of CmaCh02G001720 vs. TAIR 10
Match: AT1G19020.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48180.1); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 8.2e-05
Identity = 32/84 (38.10%), Postives = 46/84 (54.76%), Query Frame = 0


Query: 42  SWADQW----GSGNYGVEDDDKMVAKKGSGNGSSSKKMTEVKAAASAGFVKAKAVAAVGA 101
           SWADQW     S   G      +V   GSG  S++   T+ K     G  K KAVA+ G 
Sbjct: 5   SWADQWDNSGDSAKGGRIGSGAVVRSSGSGATSNT---TKYKEKMGQGLDKTKAVASSGF 64

Query: 102 QKVKSGTSVGIKWVKNQYQKKVSK 122
           +K+K+G+++G +WVK++Y K   K
Sbjct: 65  KKLKTGSAIGFRWVKDKYHKTTHK 85

[Close]

BLAST of CmaCh02G001720 vs. TAIR 10
Match: AT1G11740.1 (ankyrin repeat family protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.1e-04
Identity = 31/84 (36.90%), Postives = 39/84 (46.43%), Query Frame = 0


Query: 35  KMGSKAPSWADQWGSGNYGVEDDDKMVAKKGSGNGSSSKKMTEVKAAASAGFVKAKAVAA 94
           KM S+APSWADQWG+G  GV   ++    K    G  S K         AG  KAK V  
Sbjct: 572 KMASEAPSWADQWGTGGIGVMAAEETTDGKKDVTGKKSGK-------TKAGINKAKIV-- 631

Query: 95  VGAQKVKSGTSVGIKWVKNQYQKK 119
                      +G+ W+KN  Q+K
Sbjct: 632 ---------VFIGVNWMKNLVQRK 637

The following BLAST results are available for this feature:

BLAST of CmaCh02G001720 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh02G001720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR11	4.7e-32	90.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418340 PE=4 SV=1	[more]
A0A5D3DKS5	5.2e-31	89.77	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5C7HG95	8.0e-24	75.29	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020628 PE=4 SV=1	[more]
V4UEV4	1.7e-21	73.26	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017336mg PE=4 ...	[more]
B9IAG0	1.8e-20	69.77	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G153900 PE=4 ...	[more]

BLAST of CmaCh02G001720 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034974.1	2.2e-36	98.86	hypothetical protein SDJN02_01767, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6604861.1	1.1e-35	100.00	hypothetical protein SDJN03_02178, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0059574.1	1.1e-30	89.77	hypothetical protein E6C27_scaffold4837G00020 [Cucumis melo var. makuwa] >KAE865...	[more]
KAG7010736.1	3.4e-29	86.21	hypothetical protein SDJN02_27532, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6570886.1	4.9e-28	84.88	hypothetical protein SDJN03_29801, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh02G001720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48180.1	5.7e-06	41.25	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G19020.1	8.2e-05	38.10	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G11740.1	4.1e-04	36.90	ankyrin repeat family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33386	OS02G0740600 PROTEIN	coord: 36..121
None	No IPR available	PANTHER	PTHR33386:SF13	ANKYRIN REPEAT PROTEIN	coord: 36..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G001720.1	CmaCh02G001720.1	mRNA