CmaCh02G001460 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh02G001460
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	transcription factor ILR3-like
Location	Cma_Chr02: 697750 .. 699204 (+)
RNA-Seq Expression	CmaCh02G001460
Synteny	CmaCh02G001460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTACTCTGCAGGAAACTGGAATTGGCTCTTCGATTACTCTACAATGGATGATCTCGCCGTCGCCGGAAACTTCTCCCCTCCACAGTCGGTTGGTTTCAGCTGGTCCAATCCCTCCATCAACTTTTCATCTAAAGACAGGTGGGTAAATTTATGTACTCTTTGTTTCTATTACTCTGTTTGTGGTTATTATGTTCATCAAAAGCCGAACATCCCATCAGCTTTAATCTATGGTTTTCCTTTCCCCCTTCATTGCTTTTGTTTTCTGCAAGGAATTGTGATAAGATTGTTGCAACTGTTCTACACGTCTGCGCATCTTAACTGTTTGCTTAAATGCCATGCCATGCCATTTTAGGGACAGAGCAACTCGGTTTGTGCCTTTTGGGACTGTGTGCAGTGTTGGGTCTTTGGAAACCAAATTAAATTTTGGTTTGGCCTTCAGTACTATGCTATAGCATGTGATTAACTGGAGAATCTTTTAGCAACCAAGTTTATAATCAATTAGTTCTGTTTTCTGATGCAGATACAAAGCATTCCAATTCCCCATAACCCCACTTGAACATTAGTTGATGAACTCGTTGGATCTACTAGTCTCTTTCTCTCTCTCTCTCATGTTCTATTTTTAACTTGGATATTGGATAAACTATTCACTAGAGGTTATACTGATTCAGTTGGCTTGGGAAATGATTTAATTTGTTTCTTTATGGATCATGTTATTGTTCTTAAGTTTGATTTTGGGGATATGACGTCAATGAGAGCTCAGTCAAAGGTATCAAATGGCTACTGAGCCTCTTAGATGGGGTGATTCATGCTGTTTTGGATCAAGATTAAAAAATTGATGATCCGGTGGGAGGATTATTATTTCAGAGCTCTTGTTTTCATTAGTTGCCAGCTAACGCTGACTCAAGTGTGTAGAGTAGCCTAACTTCATCCGTTTGTTTCGTAAACCATCAGTTGGAGAGGGAAACGAGTGCTGGCGAGGATGCTGGGCCTTGAATGCAGGTGGATTGTAAGATCCCACATCGGTTGGAGAGGGGAACAAAACATTCTTTATAAGGATGTGGAAACCTCTCCCTAGCTAACGCGTTTTAAAACCGTGAGCCTGACGGCGATACGTAACAGGCCATAACGGACAATATTTGCTCTTACCGCTTTACTCCCTAGTAAAAGGATAAACCTTCAAACAATTTATTCTTTTTATGTGGGTTTTCTTGACAAGACGGGCTGGATCTGTTGAGTTGCTACCTTGTTGGAGGAGAATGCATGAAATAAGTTTATTATTTGCGTTTTTATTCATTGGATATTCACTTTTTTCAGCTTGGAGGTAGACTGCTCGTATGGAGATCTGGACGGCTTACAGGAAGTGGGTTGAAAACGGTAAGTTTCTATCAGAACTACTGAAGATTTAAAACAGATAAGAATCTATTTGGGGTAGCTAAATTTGGTGAAGTAG

mRNA sequence

ATGGACTACTCTGCAGGAAACTGGAATTGGCTCTTCGATTACTCTACAATGGATGATCTCGCCGTCGCCGGAAACTTCTCCCCTCCACAGTCGGTTGGTTTCAGCTGGTCCAATCCCTCCATCAACTTTTCATCTAAAGACAGGTGGCTTGGAGGTAGACTGCTCGTATGGAGATCTGGACGGCTTACAGGAAGTGGGTTGAAAACGCTAAATTTGGTGAAGTAG

Coding sequence (CDS)

ATGGACTACTCTGCAGGAAACTGGAATTGGCTCTTCGATTACTCTACAATGGATGATCTCGCCGTCGCCGGAAACTTCTCCCCTCCACAGTCGGTTGGTTTCAGCTGGTCCAATCCCTCCATCAACTTTTCATCTAAAGACAGGTGGCTTGGAGGTAGACTGCTCGTATGGAGATCTGGACGGCTTACAGGAAGTGGGTTGAAAACGCTAAATTTGGTGAAGTAG

Protein sequence

MDYSAGNWNWLFDYSTMDDLAVAGNFSPPQSVGFSWSNPSINFSSKDRWLGGRLLVWRSGRLTGSGLKTLNLVK

Homology

[Close]

BLAST of CmaCh02G001460 vs. ExPASy TrEMBL
Match: A0A6J1G8R0 (transcription factor ILR3-like OS=Cucurbita moschata OX=3662 GN=LOC111451848 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.0e-18
Identity = 47/51 (92.16%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MDYSAGNWNWLFDYSTMDDLAV----AGNFSPPQSVGFSWSNPSINFSSKD 48
          MDYSAGNWNWLFDYSTMDDLAV    AGNFSPPQSVGFSWSNPSINFSSKD
Sbjct: 1  MDYSAGNWNWLFDYSTMDDLAVAAAAAGNFSPPQSVGFSWSNPSINFSSKD 51

[Close]

BLAST of CmaCh02G001460 vs. ExPASy TrEMBL
Match: A0A6J1CFN5 (transcription factor ILR3-like OS=Momordica charantia OX=3673 GN=LOC111010995 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.1e-15
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1  MDYSAGNWNWLFDYSTMDDLAV-AGNFSPPQSVGFSWSNPSINFSSKD 48
          MDYS+GNWNWLFDY+TMDD+AV A +FSPPQS+ F+WSNPSINFSSKD
Sbjct: 1  MDYSSGNWNWLFDYTTMDDIAVAAADFSPPQSISFTWSNPSINFSSKD 48

[Close]

BLAST of CmaCh02G001460 vs. ExPASy TrEMBL
Match: A0A0A0LQH8 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G423590 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.1e-11
Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1  MDYSAGNWNWLFDYSTMDDLAVAG-NFSPPQSVGFSWSNPSINFSSKD 48
          MD    NWNWLFDYST+DDLAV    FSPPQS+ FSWSNPSINF SKD
Sbjct: 1  MDNPPPNWNWLFDYSTVDDLAVVDPRFSPPQSISFSWSNPSINFLSKD 48

[Close]

BLAST of CmaCh02G001460 vs. ExPASy TrEMBL
Match: A0A5D3BGF0 (Transcription factor ILR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00470 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.8e-11
Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1  MDYSAGNWNWLFDYSTMDDLAVAG-NFSPPQSVGFSWSNPSINFSSKD 48
          MDY   NWNWLFD STMDDLAV    FSPPQS+ FSWSNPSI+F SKD
Sbjct: 1  MDYPPPNWNWLFDCSTMDDLAVVDPRFSPPQSISFSWSNPSISFVSKD 48

[Close]

BLAST of CmaCh02G001460 vs. ExPASy TrEMBL
Match: A0A5A7STE4 (Transcription factor ILR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold500G00100 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.8e-11
Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1  MDYSAGNWNWLFDYSTMDDLAVAG-NFSPPQSVGFSWSNPSINFSSKD 48
          MDY   NWNWLFD STMDDLAV    FSPPQS+ FSWSNPSI+F SKD
Sbjct: 1  MDYPPPNWNWLFDCSTMDDLAVVDPRFSPPQSISFSWSNPSISFVSKD 48

[Close]

BLAST of CmaCh02G001460 vs. NCBI nr
Match: KAG6604841.1 (Transcription factor ILR3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.1 bits (248), Expect = 8.2e-18
Identity = 47/51 (92.16%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MDYSAGNWNWLFDYSTMDDLAV----AGNFSPPQSVGFSWSNPSINFSSKD 48
          MDYSAGNWNWLFDYSTMDDLAV    AGNFSPPQSVGFSWSNPSINFSSKD
Sbjct: 1  MDYSAGNWNWLFDYSTMDDLAVAAAAAGNFSPPQSVGFSWSNPSINFSSKD 51

[Close]

BLAST of CmaCh02G001460 vs. NCBI nr
Match: KAG7034954.1 (Transcription factor ILR3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.1 bits (248), Expect = 8.2e-18
Identity = 47/51 (92.16%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MDYSAGNWNWLFDYSTMDDLAV----AGNFSPPQSVGFSWSNPSINFSSKD 48
          MDYSAGNWNWLFDYSTMDDLAV    AGNFSPPQSVGFSWSNPSINFSSKD
Sbjct: 1  MDYSAGNWNWLFDYSTMDDLAVAAAAAGNFSPPQSVGFSWSNPSINFSSKD 51

[Close]

BLAST of CmaCh02G001460 vs. NCBI nr
Match: XP_022948203.1 (transcription factor ILR3-like [Cucurbita moschata])

HSP 1 Score: 100.1 bits (248), Expect = 8.2e-18
Identity = 47/51 (92.16%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MDYSAGNWNWLFDYSTMDDLAV----AGNFSPPQSVGFSWSNPSINFSSKD 48
          MDYSAGNWNWLFDYSTMDDLAV    AGNFSPPQSVGFSWSNPSINFSSKD
Sbjct: 1  MDYSAGNWNWLFDYSTMDDLAVAAAAAGNFSPPQSVGFSWSNPSINFSSKD 51

[Close]

BLAST of CmaCh02G001460 vs. NCBI nr
Match: XP_023532411.1 (transcription factor ILR3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.4 bits (246), Expect = 1.4e-17
Identity = 47/53 (88.68%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1  MDYSAGNWNWLFDYSTMDDLAV------AGNFSPPQSVGFSWSNPSINFSSKD 48
          MDYSAGNWNWLFDYSTMDDLAV      AGNFSPPQSVGFSWSNPSINFSSKD
Sbjct: 1  MDYSAGNWNWLFDYSTMDDLAVAAAAAAAGNFSPPQSVGFSWSNPSINFSSKD 53

[Close]

BLAST of CmaCh02G001460 vs. NCBI nr
Match: XP_022140291.1 (transcription factor ILR3-like [Momordica charantia])

HSP 1 Score: 90.1 bits (222), Expect = 8.5e-15
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1  MDYSAGNWNWLFDYSTMDDLAV-AGNFSPPQSVGFSWSNPSINFSSKD 48
          MDYS+GNWNWLFDY+TMDD+AV A +FSPPQS+ F+WSNPSINFSSKD
Sbjct: 1  MDYSSGNWNWLFDYTTMDDIAVAAADFSPPQSISFTWSNPSINFSSKD 48

The following BLAST results are available for this feature:

BLAST of CmaCh02G001460 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh02G001460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G8R0	4.0e-18	92.16	transcription factor ILR3-like OS=Cucurbita moschata OX=3662 GN=LOC111451848 PE=...	[more]
A0A6J1CFN5	4.1e-15	81.25	transcription factor ILR3-like OS=Momordica charantia OX=3673 GN=LOC111010995 PE...	[more]
A0A0A0LQH8	2.1e-11	75.00	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G423590 PE=4 S...	[more]
A0A5D3BGF0	2.8e-11	75.00	Transcription factor ILR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7STE4	2.8e-11	75.00	Transcription factor ILR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of CmaCh02G001460 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604841.1	8.2e-18	92.16	Transcription factor ILR3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7034954.1	8.2e-18	92.16	Transcription factor ILR3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022948203.1	8.2e-18	92.16	transcription factor ILR3-like [Cucurbita moschata]	[more]
XP_023532411.1	1.4e-17	88.68	transcription factor ILR3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022140291.1	8.5e-15	81.25	transcription factor ILR3-like [Momordica charantia]	[more]

BLAST of CmaCh02G001460 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G001460.1	CmaCh02G001460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055072	iron ion homeostasis
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity