CmaCh02G001120 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTCTCTAATGAACAAAACCCAGTTCCCACCATCTTTCCTGTGATTCGCTTCAATATGAGCTGCCCTTTATATGCCCTTTTGCTTCATCCTCTCAATTTCACCAACTTTCTAACCAAAATTGAAAGAAACAATGACACCCACAAAGGCTTCAATTCTGGTCGTCGCTGTTCTTCTCGTTGTCCTCCTTCAAGTTCCCACAGCCATGCCCGCCAGACACCTCCCGTCTCGTAAGAATCTAGCTCAAACCCAATACAAAGATCACATTTTTAAACAAACCCAGATGATAAAAGTAGATTCATTTGGTGCCCATTATTGAAAAAGTCACTTTTTTGGTTATGCAGATAATAGTTCAAAGCGAGTGAGGGGCGAGACGGTGGAAGTTGCAGGGTCGAGGTTACCAGATTGTTCTCACGCTTGTGGGTCGTGCTCGCCATGCAGGCTTGTGATGGTTAGATTCTTTTGTTCTTCGGTTGAAGACTCGGAGACTTGTCCCTTGGCTTACAAGTGCATGTGCAGCCACAAGTCCTTCCCTGTTCCTTGATTTTATCAGATTTCTAGCTATCTTTGGGCTGTGTGTATCATATATTAATAATGCCTTTTCTCTCACAGCTTCATTTTAGGATCGGTCTTGGGTTTTCTTCTTGTTATTATCAGCCATCTTGTAAGAGTTTTTTTTAGTACTAGAAATGCATGTTTTCTTGGGGTTCATCTTCCTTTCCGGGTTAGTTTGTACTCCACCACTAACAGATATTGCCACGCGTTTACTAAGGACAAGTTTTCATACTGTTATAAGAAATAATTTGTTTTCCTCTCC GTCTCTAATGAACAAAACCCAGTTCCCACCATCTTTCCTGTGATTCGCTTCAATATGAGCTGCCCTTTATATGCCCTTTTGCTTCATCCTCTCAATTTCACCAACTTTCTAACCAAAATTGAAAGAAACAATGACACCCACAAAGGCTTCAATTCTGGTCGTCGCTGTTCTTCTCGTTGTCCTCCTTCAAGTTCCCACAGCCATGCCCGCCAGACACCTCCCGTCTCATAATAGTTCAAAGCGAGTGAGGGGCGAGACGGTGGAAGTTGCAGGGTCGAGGTTACCAGATTGTTCTCACGCTTGTGGGTCGTGCTCGCCATGCAGGCTTGTGATGGTTAGATTCTTTTGTTCTTCGGTTGAAGACTCGGAGACTTGTCCCTTGGCTTACAAGTGCATGTGCAGCCACAAGTCCTTCCCTGTTCCTTGATTTTATCAGATTTCTAGCTATCTTTGGGCTGTGTGTATCATATATTAATAATGCCTTTTCTCTCACAGCTTCATTTTAGGATCGGTCTTGGGTTTTCTTCTTGTTATTATCAGCCATCTTGTAAGAGTTTTTTTTAGTACTAGAAATGCATGTTTTCTTGGGGTTCATCTTCCTTTCCGGGTTAGTTTGTACTCCACCACTAACAGATATTGCCACGCGTTTACTAAGGACAAGTTTTCATACTGTTATAAGAAATAATTTGTTTTCCTCTCC ATGACACCCACAAAGGCTTCAATTCTGGTCGTCGCTGTTCTTCTCGTTGTCCTCCTTCAAGTTCCCACAGCCATGCCCGCCAGACACCTCCCGTCTCATAATAGTTCAAAGCGAGTGAGGGGCGAGACGGTGGAAGTTGCAGGGTCGAGGTTACCAGATTGTTCTCACGCTTGTGGGTCGTGCTCGCCATGCAGGCTTGTGATGGTTAGATTCTTTTGTTCTTCGGTTGAAGACTCGGAGACTTGTCCCTTGGCTTACAAGTGCATGTGCAGCCACAAGTCCTTCCCTGTTCCTTGA MTPTKASILVVAVLLVVLLQVPTAMPARHLPSHNSSKRVRGETVEVAGSRLPDCSHACGSCSPCRLVMVRFFCSSVEDSETCPLAYKCMCSHKSFPVP Homology
BLAST of CmaCh02G001120 vs. ExPASy Swiss-Prot
Match: Q8S8I4 (Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE=1 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 3.3e-25 Identity = 56/85 (65.88%), Postives = 66/85 (77.65%), Query Frame = 0
BLAST of CmaCh02G001120 vs. ExPASy Swiss-Prot
Match: C4B8C5 (EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=EPFL7 PE=1 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 1.3e-10 Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 0
BLAST of CmaCh02G001120 vs. ExPASy Swiss-Prot
Match: Q8LC53 (Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana OX=3702 GN=EPF2 PE=1 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 7.4e-09 Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 0
BLAST of CmaCh02G001120 vs. ExPASy TrEMBL
Match: A0A2G2YTN2 (Epidermal patterning factor-like protein OS=Capsicum annuum OX=4072 GN=T459_23878 PE=3 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 7.6e-25 Identity = 58/103 (56.31%), Postives = 76/103 (73.79%), Query Frame = 0
BLAST of CmaCh02G001120 vs. ExPASy TrEMBL
Match: A0A6J1CGD5 (Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC111011291 PE=3 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 6.5e-24 Identity = 61/90 (67.78%), Postives = 70/90 (77.78%), Query Frame = 0
BLAST of CmaCh02G001120 vs. ExPASy TrEMBL
Match: A0A087HEB4 (Epidermal patterning factor-like protein OS=Arabis alpina OX=50452 GN=AALP_AA3G376600 PE=3 SV=1) HSP 1 Score: 117.9 bits (294), Expect = 2.5e-23 Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 0
BLAST of CmaCh02G001120 vs. ExPASy TrEMBL
Match: M1ADB5 (Epidermal patterning factor-like protein OS=Solanum tuberosum OX=4113 PE=3 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 5.5e-23 Identity = 55/107 (51.40%), Postives = 74/107 (69.16%), Query Frame = 0
BLAST of CmaCh02G001120 vs. ExPASy TrEMBL
Match: A0A6N2AZG3 (Epidermal patterning factor-like protein OS=Solanum chilense OX=4083 GN=EJD97_020336 PE=3 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 5.5e-23 Identity = 59/104 (56.73%), Postives = 76/104 (73.08%), Query Frame = 0
BLAST of CmaCh02G001120 vs. NCBI nr
Match: KAG7034925.1 (Protein EPIDERMAL PATTERNING FACTOR 1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 192.2 bits (487), Expect = 2.1e-45 Identity = 92/98 (93.88%), Postives = 96/98 (97.96%), Query Frame = 0
BLAST of CmaCh02G001120 vs. NCBI nr
Match: KAG6604806.1 (ELMO domain-containing protein A, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 129.4 bits (324), Expect = 1.7e-26 Identity = 64/69 (92.75%), Postives = 67/69 (97.10%), Query Frame = 0
BLAST of CmaCh02G001120 vs. NCBI nr
Match: PHT73093.1 (Protein EPIDERMAL PATTERNING FACTOR 1 [Capsicum annuum]) HSP 1 Score: 122.9 bits (307), Expect = 1.6e-24 Identity = 58/103 (56.31%), Postives = 76/103 (73.79%), Query Frame = 0
BLAST of CmaCh02G001120 vs. NCBI nr
Match: XP_028808492.1 (protein EPIDERMAL PATTERNING FACTOR 1 [Prosopis alba]) HSP 1 Score: 120.6 bits (301), Expect = 7.8e-24 Identity = 61/107 (57.01%), Postives = 75/107 (70.09%), Query Frame = 0
BLAST of CmaCh02G001120 vs. NCBI nr
Match: XP_022140689.1 (protein EPIDERMAL PATTERNING FACTOR 1-like [Momordica charantia]) HSP 1 Score: 119.8 bits (299), Expect = 1.3e-23 Identity = 61/90 (67.78%), Postives = 70/90 (77.78%), Query Frame = 0
BLAST of CmaCh02G001120 vs. TAIR 10
Match: AT2G20875.1 (epidermal patterning factor 1 ) HSP 1 Score: 115.5 bits (288), Expect = 2.3e-26 Identity = 56/85 (65.88%), Postives = 66/85 (77.65%), Query Frame = 0
BLAST of CmaCh02G001120 vs. TAIR 10
Match: AT1G71866.1 (LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Putative membrane lipoprotein (TAIR:AT1G34245.1). ) HSP 1 Score: 67.0 bits (162), Expect = 9.5e-12 Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 0
BLAST of CmaCh02G001120 vs. TAIR 10
Match: AT1G34245.1 (Putative membrane lipoprotein ) HSP 1 Score: 61.2 bits (147), Expect = 5.2e-10 Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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