CmaCh02G001120 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh02G001120
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionEpidermal patterning factor-like protein
LocationCma_Chr02: 565556 .. 566369 (+)
RNA-Seq ExpressionCmaCh02G001120
SyntenyCmaCh02G001120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTCTAATGAACAAAACCCAGTTCCCACCATCTTTCCTGTGATTCGCTTCAATATGAGCTGCCCTTTATATGCCCTTTTGCTTCATCCTCTCAATTTCACCAACTTTCTAACCAAAATTGAAAGAAACAATGACACCCACAAAGGCTTCAATTCTGGTCGTCGCTGTTCTTCTCGTTGTCCTCCTTCAAGTTCCCACAGCCATGCCCGCCAGACACCTCCCGTCTCGTAAGAATCTAGCTCAAACCCAATACAAAGATCACATTTTTAAACAAACCCAGATGATAAAAGTAGATTCATTTGGTGCCCATTATTGAAAAAGTCACTTTTTTGGTTATGCAGATAATAGTTCAAAGCGAGTGAGGGGCGAGACGGTGGAAGTTGCAGGGTCGAGGTTACCAGATTGTTCTCACGCTTGTGGGTCGTGCTCGCCATGCAGGCTTGTGATGGTTAGATTCTTTTGTTCTTCGGTTGAAGACTCGGAGACTTGTCCCTTGGCTTACAAGTGCATGTGCAGCCACAAGTCCTTCCCTGTTCCTTGATTTTATCAGATTTCTAGCTATCTTTGGGCTGTGTGTATCATATATTAATAATGCCTTTTCTCTCACAGCTTCATTTTAGGATCGGTCTTGGGTTTTCTTCTTGTTATTATCAGCCATCTTGTAAGAGTTTTTTTTAGTACTAGAAATGCATGTTTTCTTGGGGTTCATCTTCCTTTCCGGGTTAGTTTGTACTCCACCACTAACAGATATTGCCACGCGTTTACTAAGGACAAGTTTTCATACTGTTATAAGAAATAATTTGTTTTCCTCTCC

mRNA sequence

GTCTCTAATGAACAAAACCCAGTTCCCACCATCTTTCCTGTGATTCGCTTCAATATGAGCTGCCCTTTATATGCCCTTTTGCTTCATCCTCTCAATTTCACCAACTTTCTAACCAAAATTGAAAGAAACAATGACACCCACAAAGGCTTCAATTCTGGTCGTCGCTGTTCTTCTCGTTGTCCTCCTTCAAGTTCCCACAGCCATGCCCGCCAGACACCTCCCGTCTCATAATAGTTCAAAGCGAGTGAGGGGCGAGACGGTGGAAGTTGCAGGGTCGAGGTTACCAGATTGTTCTCACGCTTGTGGGTCGTGCTCGCCATGCAGGCTTGTGATGGTTAGATTCTTTTGTTCTTCGGTTGAAGACTCGGAGACTTGTCCCTTGGCTTACAAGTGCATGTGCAGCCACAAGTCCTTCCCTGTTCCTTGATTTTATCAGATTTCTAGCTATCTTTGGGCTGTGTGTATCATATATTAATAATGCCTTTTCTCTCACAGCTTCATTTTAGGATCGGTCTTGGGTTTTCTTCTTGTTATTATCAGCCATCTTGTAAGAGTTTTTTTTAGTACTAGAAATGCATGTTTTCTTGGGGTTCATCTTCCTTTCCGGGTTAGTTTGTACTCCACCACTAACAGATATTGCCACGCGTTTACTAAGGACAAGTTTTCATACTGTTATAAGAAATAATTTGTTTTCCTCTCC

Coding sequence (CDS)

ATGACACCCACAAAGGCTTCAATTCTGGTCGTCGCTGTTCTTCTCGTTGTCCTCCTTCAAGTTCCCACAGCCATGCCCGCCAGACACCTCCCGTCTCATAATAGTTCAAAGCGAGTGAGGGGCGAGACGGTGGAAGTTGCAGGGTCGAGGTTACCAGATTGTTCTCACGCTTGTGGGTCGTGCTCGCCATGCAGGCTTGTGATGGTTAGATTCTTTTGTTCTTCGGTTGAAGACTCGGAGACTTGTCCCTTGGCTTACAAGTGCATGTGCAGCCACAAGTCCTTCCCTGTTCCTTGA

Protein sequence

MTPTKASILVVAVLLVVLLQVPTAMPARHLPSHNSSKRVRGETVEVAGSRLPDCSHACGSCSPCRLVMVRFFCSSVEDSETCPLAYKCMCSHKSFPVP
Homology
BLAST of CmaCh02G001120 vs. ExPASy Swiss-Prot
Match: Q8S8I4 (Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.3e-25
Identity = 56/85 (65.88%), Postives = 66/85 (77.65%), Query Frame = 0

Query: 27  ARHLP--SHNS-----------SKRVRGETVEVAGSRLPDCSHACGSCSPCRLVMVRFFC 86
           ARHLP  SH S            +R R +TV+VAGSRLPDCSHACGSCSPCRLVMV F C
Sbjct: 20  ARHLPTSSHPSHHHVGMTGALKRQRRRPDTVQVAGSRLPDCSHACGSCSPCRLVMVSFVC 79

Query: 87  SSVEDSETCPLAYKCMCSHKSFPVP 99
           +SVE++ETCP+AYKCMC++KS+PVP
Sbjct: 80  ASVEEAETCPMAYKCMCNNKSYPVP 104

BLAST of CmaCh02G001120 vs. ExPASy Swiss-Prot
Match: C4B8C5 (EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=EPFL7 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-10
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 0

Query: 45  EVAGSRLPDCSHACGSCSPCRLVMVRFFCSSVEDSETCPLAYKCMCSHKSFPVP 99
           + +GS +PDCS+ACG C PC+LV++   CS+   SE CPL YKC+C  K + VP
Sbjct: 119 KASGSSIPDCSNACGPCKPCKLVVISSTCSA---SEACPLVYKCLCKGKYYHVP 169

BLAST of CmaCh02G001120 vs. ExPASy Swiss-Prot
Match: Q8LC53 (Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana OX=3702 GN=EPF2 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.4e-09
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 0

Query: 48  GSRLPDCSHACGSCSPCRLVMVRFFCSSVEDSETCPLAYKCMCSHKSFPVP 99
           GS LPDCS+ACG+CSPC+ VM+ F CS    +E+C + Y+C C  + + VP
Sbjct: 70  GSSLPDCSYACGACSPCKRVMISFECSV---AESCSVIYRCTCRGRYYHVP 117

BLAST of CmaCh02G001120 vs. ExPASy TrEMBL
Match: A0A2G2YTN2 (Epidermal patterning factor-like protein OS=Capsicum annuum OX=4072 GN=T459_23878 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 7.6e-25
Identity = 58/103 (56.31%), Postives = 76/103 (73.79%), Query Frame = 0

Query: 7   SILVVAVLLVVLLQVPTAMPARHLPSHNS-----------SKRVRGETVEVAGSRLPDCS 66
           S++ +A +++VL+ +P  M ARH+P  NS           + R R +T+ VAGSRLPDCS
Sbjct: 3   SLMYIATIIIVLVFLPIVMNARHIPKINSYDQRHVMSPPRAMRKRADTLAVAGSRLPDCS 62

Query: 67  HACGSCSPCRLVMVRFFCSSVEDSETCPLAYKCMCSHKSFPVP 99
           HACGSC PCRLVMV F CSS+E++ETCP+AYKCMC +KS+PVP
Sbjct: 63  HACGSCKPCRLVMVSFVCSSLEEAETCPVAYKCMCHNKSYPVP 105

BLAST of CmaCh02G001120 vs. ExPASy TrEMBL
Match: A0A6J1CGD5 (Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC111011291 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.5e-24
Identity = 61/90 (67.78%), Postives = 70/90 (77.78%), Query Frame = 0

Query: 10  VVAVLLVVLLQVPTAMPARHLPSHNSSKRVRGETVEVAGSRLPDCSHACGSCSPCRLVMV 69
           VV VL++V L V T   ARH+       R RGETV++AGSRLPDCSHACG CSPCRLVMV
Sbjct: 12  VVVVLVIVGLLVQTVTSARHITRSGKGIR-RGETVKIAGSRLPDCSHACGWCSPCRLVMV 71

Query: 70  RFFC-SSVEDSETCPLAYKCMCSHKSFPVP 99
           R+ C ++VEDSETCP AYKCMC+ KSFPVP
Sbjct: 72  RYICGAAVEDSETCPTAYKCMCTFKSFPVP 100

BLAST of CmaCh02G001120 vs. ExPASy TrEMBL
Match: A0A087HEB4 (Epidermal patterning factor-like protein OS=Arabis alpina OX=50452 GN=AALP_AA3G376600 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.5e-23
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 0

Query: 25  MPARHLPSHNSSKRVRG---------ETVEVAGSRLPDCSHACGSCSPCRLVMVRFFCSS 84
           +P  H PSH  +   RG         +TV+VAGSRLPDCSHACGSCSPCRLVMV F C+S
Sbjct: 24  LPTPHYPSHRHAGITRGTLKHRQRRPDTVQVAGSRLPDCSHACGSCSPCRLVMVSFVCAS 83

Query: 85  VEDSETCPLAYKCMCSHKSFPVP 99
           +E++ETCP+AYKCMC++KS+PVP
Sbjct: 84  IEEAETCPMAYKCMCNNKSYPVP 106

BLAST of CmaCh02G001120 vs. ExPASy TrEMBL
Match: M1ADB5 (Epidermal patterning factor-like protein OS=Solanum tuberosum OX=4113 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.5e-23
Identity = 55/107 (51.40%), Postives = 74/107 (69.16%), Query Frame = 0

Query: 10  VVAVLLVVLLQVPTAMPARHLPSHNSSKR------------------VRGETVEVAGSRL 69
           +  +++++L+ +P  M ARH+P  NS +R                   R +T++VAGSRL
Sbjct: 7   IATMIIILLVFLPIVMNARHIPKINSYERHMVMSPTKKTTLARGIMAKRADTLQVAGSRL 66

Query: 70  PDCSHACGSCSPCRLVMVRFFCSSVEDSETCPLAYKCMCSHKSFPVP 99
           PDCSHACGSC PCRLVMV F CSS+E++ETCP+AYKCMC +KS+PVP
Sbjct: 67  PDCSHACGSCKPCRLVMVSFVCSSLEEAETCPVAYKCMCHNKSYPVP 113

BLAST of CmaCh02G001120 vs. ExPASy TrEMBL
Match: A0A6N2AZG3 (Epidermal patterning factor-like protein OS=Solanum chilense OX=4083 GN=EJD97_020336 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.5e-23
Identity = 59/104 (56.73%), Postives = 76/104 (73.08%), Query Frame = 0

Query: 1   MTPTKASILVVAVLLVV-LLQVPTAMPARHLPSHNSSKR-----VRGETVEVAGSRLPDC 60
           M  T  S   +A++++V L+ +P  M AR +P  NS +R      R  T++VAGSRLPDC
Sbjct: 1   MMYTMRSFKYIAIMIIVFLVFLPIVMNARQIPKINSYERHMVMGKRAYTLQVAGSRLPDC 60

Query: 61  SHACGSCSPCRLVMVRFFCSSVEDSETCPLAYKCMCSHKSFPVP 99
           SHACGSC PCRLVMV F CSS+E++ETCP+AYKCMC +KS+PVP
Sbjct: 61  SHACGSCKPCRLVMVSFVCSSLEEAETCPVAYKCMCHNKSYPVP 104

BLAST of CmaCh02G001120 vs. NCBI nr
Match: KAG7034925.1 (Protein EPIDERMAL PATTERNING FACTOR 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 192.2 bits (487), Expect = 2.1e-45
Identity = 92/98 (93.88%), Postives = 96/98 (97.96%), Query Frame = 0

Query: 1  MTPTKASILVVAVLLVVLLQVPTAMPARHLPSHNSSKRVRGETVEVAGSRLPDCSHACGS 60
          MTPTKASILVVAVLL+V+LQVPTAMPARHLP HNS KRVRGETVEVAGSRLPDCSHACGS
Sbjct: 1  MTPTKASILVVAVLLIVILQVPTAMPARHLPPHNSPKRVRGETVEVAGSRLPDCSHACGS 60

Query: 61 CSPCRLVMVRFFCSSVEDSETCPLAYKCMCSHKSFPVP 99
          C+PCRLVMVR+FCSSVEDSETCPLAYKCMCSHKSFPVP
Sbjct: 61 CAPCRLVMVRYFCSSVEDSETCPLAYKCMCSHKSFPVP 98

BLAST of CmaCh02G001120 vs. NCBI nr
Match: KAG6604806.1 (ELMO domain-containing protein A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.4 bits (324), Expect = 1.7e-26
Identity = 64/69 (92.75%), Postives = 67/69 (97.10%), Query Frame = 0

Query: 1  MTPTKASILVVAVLLVVLLQVPTAMPARHLPSHNSSKRVRGETVEVAGSRLPDCSHACGS 60
          MTPTKASILVVAVLL+V+LQVPTAMPARHLP HNS KRVRGETVEVAGSRLPDCSHACGS
Sbjct: 1  MTPTKASILVVAVLLIVILQVPTAMPARHLPPHNSPKRVRGETVEVAGSRLPDCSHACGS 60

Query: 61 CSPCRLVMV 70
          C+PCRLVMV
Sbjct: 61 CAPCRLVMV 69

BLAST of CmaCh02G001120 vs. NCBI nr
Match: PHT73093.1 (Protein EPIDERMAL PATTERNING FACTOR 1 [Capsicum annuum])

HSP 1 Score: 122.9 bits (307), Expect = 1.6e-24
Identity = 58/103 (56.31%), Postives = 76/103 (73.79%), Query Frame = 0

Query: 7   SILVVAVLLVVLLQVPTAMPARHLPSHNS-----------SKRVRGETVEVAGSRLPDCS 66
           S++ +A +++VL+ +P  M ARH+P  NS           + R R +T+ VAGSRLPDCS
Sbjct: 3   SLMYIATIIIVLVFLPIVMNARHIPKINSYDQRHVMSPPRAMRKRADTLAVAGSRLPDCS 62

Query: 67  HACGSCSPCRLVMVRFFCSSVEDSETCPLAYKCMCSHKSFPVP 99
           HACGSC PCRLVMV F CSS+E++ETCP+AYKCMC +KS+PVP
Sbjct: 63  HACGSCKPCRLVMVSFVCSSLEEAETCPVAYKCMCHNKSYPVP 105

BLAST of CmaCh02G001120 vs. NCBI nr
Match: XP_028808492.1 (protein EPIDERMAL PATTERNING FACTOR 1 [Prosopis alba])

HSP 1 Score: 120.6 bits (301), Expect = 7.8e-24
Identity = 61/107 (57.01%), Postives = 75/107 (70.09%), Query Frame = 0

Query: 11  VAVLLVVLLQVPTAMPARHLPSHNSS------------------KRVRGETV-EVAGSRL 70
           +A + ++LL VP  + ARH+PS   S                  KR+RGETV EVAGSRL
Sbjct: 3   IATVFLLLLYVPLLISARHIPSSEYSRQDEEQAGRGLLSDTKMMKRLRGETVEEVAGSRL 62

Query: 71  PDCSHACGSCSPCRLVMVRFFCSSVEDSETCPLAYKCMCSHKSFPVP 99
           PDCSHACGSCSPCRLVMV F C+S++++ETCP+AYKCMC  KS+PVP
Sbjct: 63  PDCSHACGSCSPCRLVMVSFVCASLQEAETCPMAYKCMCHDKSYPVP 109

BLAST of CmaCh02G001120 vs. NCBI nr
Match: XP_022140689.1 (protein EPIDERMAL PATTERNING FACTOR 1-like [Momordica charantia])

HSP 1 Score: 119.8 bits (299), Expect = 1.3e-23
Identity = 61/90 (67.78%), Postives = 70/90 (77.78%), Query Frame = 0

Query: 10  VVAVLLVVLLQVPTAMPARHLPSHNSSKRVRGETVEVAGSRLPDCSHACGSCSPCRLVMV 69
           VV VL++V L V T   ARH+       R RGETV++AGSRLPDCSHACG CSPCRLVMV
Sbjct: 12  VVVVLVIVGLLVQTVTSARHITRSGKGIR-RGETVKIAGSRLPDCSHACGWCSPCRLVMV 71

Query: 70  RFFC-SSVEDSETCPLAYKCMCSHKSFPVP 99
           R+ C ++VEDSETCP AYKCMC+ KSFPVP
Sbjct: 72  RYICGAAVEDSETCPTAYKCMCTFKSFPVP 100

BLAST of CmaCh02G001120 vs. TAIR 10
Match: AT2G20875.1 (epidermal patterning factor 1 )

HSP 1 Score: 115.5 bits (288), Expect = 2.3e-26
Identity = 56/85 (65.88%), Postives = 66/85 (77.65%), Query Frame = 0

Query: 27  ARHLP--SHNS-----------SKRVRGETVEVAGSRLPDCSHACGSCSPCRLVMVRFFC 86
           ARHLP  SH S            +R R +TV+VAGSRLPDCSHACGSCSPCRLVMV F C
Sbjct: 20  ARHLPTSSHPSHHHVGMTGALKRQRRRPDTVQVAGSRLPDCSHACGSCSPCRLVMVSFVC 79

Query: 87  SSVEDSETCPLAYKCMCSHKSFPVP 99
           +SVE++ETCP+AYKCMC++KS+PVP
Sbjct: 80  ASVEEAETCPMAYKCMCNNKSYPVP 104

BLAST of CmaCh02G001120 vs. TAIR 10
Match: AT1G71866.1 (LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Putative membrane lipoprotein (TAIR:AT1G34245.1). )

HSP 1 Score: 67.0 bits (162), Expect = 9.5e-12
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 0

Query: 45  EVAGSRLPDCSHACGSCSPCRLVMVRFFCSSVEDSETCPLAYKCMCSHKSFPVP 99
           + +GS +PDCS+ACG C PC+LV++   CS+   SE CPL YKC+C  K + VP
Sbjct: 119 KASGSSIPDCSNACGPCKPCKLVVISSTCSA---SEACPLVYKCLCKGKYYHVP 169

BLAST of CmaCh02G001120 vs. TAIR 10
Match: AT1G34245.1 (Putative membrane lipoprotein )

HSP 1 Score: 61.2 bits (147), Expect = 5.2e-10
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 0

Query: 48  GSRLPDCSHACGSCSPCRLVMVRFFCSSVEDSETCPLAYKCMCSHKSFPVP 99
           GS LPDCS+ACG+CSPC+ VM+ F CS    +E+C + Y+C C  + + VP
Sbjct: 70  GSSLPDCSYACGACSPCKRVMISFECSV---AESCSVIYRCTCRGRYYHVP 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8S8I43.3e-2565.88Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE... [more]
C4B8C51.3e-1051.85EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Q8LC537.4e-0950.98Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana OX=3702 GN=EPF2 PE... [more]
Match NameE-valueIdentityDescription
A0A2G2YTN27.6e-2556.31Epidermal patterning factor-like protein OS=Capsicum annuum OX=4072 GN=T459_2387... [more]
A0A6J1CGD56.5e-2467.78Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A087HEB42.5e-2362.65Epidermal patterning factor-like protein OS=Arabis alpina OX=50452 GN=AALP_AA3G3... [more]
M1ADB55.5e-2351.40Epidermal patterning factor-like protein OS=Solanum tuberosum OX=4113 PE=3 SV=1[more]
A0A6N2AZG35.5e-2356.73Epidermal patterning factor-like protein OS=Solanum chilense OX=4083 GN=EJD97_02... [more]
Match NameE-valueIdentityDescription
KAG7034925.12.1e-4593.88Protein EPIDERMAL PATTERNING FACTOR 1, partial [Cucurbita argyrosperma subsp. ar... [more]
KAG6604806.11.7e-2692.75ELMO domain-containing protein A, partial [Cucurbita argyrosperma subsp. sororia... [more]
PHT73093.11.6e-2456.31Protein EPIDERMAL PATTERNING FACTOR 1 [Capsicum annuum][more]
XP_028808492.17.8e-2457.01protein EPIDERMAL PATTERNING FACTOR 1 [Prosopis alba][more]
XP_022140689.11.3e-2367.78protein EPIDERMAL PATTERNING FACTOR 1-like [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT2G20875.12.3e-2665.88epidermal patterning factor 1 [more]
AT1G71866.19.5e-1251.85LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Put... [more]
AT1G34245.15.2e-1050.98Putative membrane lipoprotein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF17181EPFcoord: 47..96
e-value: 3.7E-15
score: 55.6
NoneNo IPR availablePANTHERPTHR33109:SF41PROTEIN EPIDERMAL PATTERNING FACTOR 1coord: 35..98
IPR039455EPIDERMAL PATTERNING FACTOR-like proteinPANTHERPTHR33109EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4coord: 35..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G001120.1CmaCh02G001120.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010052 guard cell differentiation
biological_process GO:2000122 negative regulation of stomatal complex development
biological_process GO:0010375 stomatal complex patterning
biological_process GO:0010374 stomatal complex development