CmaCh01G020460 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh01G020460
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	splicing factor U2af small subunit B-like
Location	Cma_Chr01: 13006431 .. 13007261 (-)
RNA-Seq Expression	CmaCh01G020460
Synteny	CmaCh01G020460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGTTGCTCTCGCCTCCACAACCGCCCTACTATTTCCCCCACTCTTCTCTTATCGAACATGTACCAGCGCCCCGACATGATCACCCCTGGTGTCGATGCTCAGGGTCAGCCCATAGATCCCCGCAAGATTCAGGAGCACTTCGAGGATTTCTACGAAGACATTTACGAGGAACTCGGAAAGTTCGGTGAGATCGAGAGCCTCAACATCTGTGATAACCTCGCCGACCACATGATCGGCAATGTTTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCTGCCGCACTTCAAGCGTTGCAAGGGCGATTCTACTCTGGTCGACCCATAATCGCAGATTTTTCTCCGGTGACAGATTTCCGCGAGGCCACGTGCCGCCAGTACGAGGAGAATAATTGTAATCGAGGTGGATATTGCAATTTTATGCATGTTAAGATGATTGGGAAGGACTTGAGGAGGAAGCTGTTCGGTAGTAGGTTCCGGGGTTATAGGCGGAGCCGTAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAGGACTACGATAGGCGTGAGAGGGATTATAGAGATCGTGACCATCGTGGAAACGGACGGAGCAAGGAGCGTCCAGATAGGTATGACAGAGATGGGGGAAGGAGAAGGCATGGAAGCCCCAGGCGAAGCAGAAGTCCTGTCAGAGAAGGAAGCGAAGAGCGCCGAGCCCGTATTGAACAGTGGAACAGAGAGAGGGAGGAGAAGCAGTGA

mRNA sequence

ATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGTTGCTCTCGCCTCCACAACCGCCCTACTATTTCCCCCACTCTTCTCTTATCGAACATGTACCAGCGCCCCGACATGATCACCCCTGGTGTCGATGCTCAGGGTCAGCCCATAGATCCCCGCAAGATTCAGGAGCACTTCGAGGATTTCTACGAAGACATTTACGAGGAACTCGGAAAGTTCGGTGAGATCGAGAGCCTCAACATCTGTGATAACCTCGCCGACCACATGATCGGCAATGTTTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCTGCCGCACTTCAAGCGTTGCAAGGGCGATTCTACTCTGGTCGACCCATAATCGCAGATTTTTCTCCGGTGACAGATTTCCGCGAGGCCACGTGCCGCCAGTACGAGGAGAATAATTGTAATCGAGGTGGATATTGCAATTTTATGCATGTTAAGATGATTGGGAAGGACTTGAGGAGGAAGCTGTTCGGTAGTAGGTTCCGGGGTTATAGGCGGAGCCGTAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAGGACTACGATAGGCGTGAGAGGGATTATAGAGATCGTGACCATCGTGGAAACGGACGGAGCAAGGAGCGTCCAGATAGGTATGACAGAGATGGGGGAAGGAGAAGGCATGGAAGCCCCAGGCGAAGCAGAAGTCCTGTCAGAGAAGGAAGCGAAGAGCGCCGAGCCCGTATTGAACAGTGGAACAGAGAGAGGGAGGAGAAGCAGTGA

Coding sequence (CDS)

ATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGTTGCTCTCGCCTCCACAACCGCCCTACTATTTCCCCCACTCTTCTCTTATCGAACATGTACCAGCGCCCCGACATGATCACCCCTGGTGTCGATGCTCAGGGTCAGCCCATAGATCCCCGCAAGATTCAGGAGCACTTCGAGGATTTCTACGAAGACATTTACGAGGAACTCGGAAAGTTCGGTGAGATCGAGAGCCTCAACATCTGTGATAACCTCGCCGACCACATGATCGGCAATGTTTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCTGCCGCACTTCAAGCGTTGCAAGGGCGATTCTACTCTGGTCGACCCATAATCGCAGATTTTTCTCCGGTGACAGATTTCCGCGAGGCCACGTGCCGCCAGTACGAGGAGAATAATTGTAATCGAGGTGGATATTGCAATTTTATGCATGTTAAGATGATTGGGAAGGACTTGAGGAGGAAGCTGTTCGGTAGTAGGTTCCGGGGTTATAGGCGGAGCCGTAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAGGACTACGATAGGCGTGAGAGGGATTATAGAGATCGTGACCATCGTGGAAACGGACGGAGCAAGGAGCGTCCAGATAGGTATGACAGAGATGGGGGAAGGAGAAGGCATGGAAGCCCCAGGCGAAGCAGAAGTCCTGTCAGAGAAGGAAGCGAAGAGCGCCGAGCCCGTATTGAACAGTGGAACAGAGAGAGGGAGGAGAAGCAGTGA

Protein sequence

MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ

Homology

[Close]

BLAST of CmaCh01G020460 vs. ExPASy Swiss-Prot
Match: Q9FMY5 (Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B PE=1 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 3.8e-127
Identity = 237/281 (84.34%), Postives = 256/281 (91.10%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLN+CDNLADHMIGNVYV F+EED
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
            AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRKLFGSRFRGYRR-SRSRSRSLSPRNRKDYDR-RER-DYRDRDHRGNG-RSKERPDRYD 240
           RRKLFG   R YRR SRSRSRS+SPR ++++ R RER D RDRD  GNG RS +R +R+D
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 RD-GGRRRHGSPRRSRSP--VREGSEERRARIEQWNREREE 275
           RD GGRRRHGSP+RSRSP  VREGSEERRARIEQWNRER+E
Sbjct: 241 RDGGGRRRHGSPKRSRSPRNVREGSEERRARIEQWNRERDE 281

[Close]

BLAST of CmaCh01G020460 vs. ExPASy Swiss-Prot
Match: Q9S709 (Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 5.5e-126
Identity = 237/292 (81.16%), Postives = 257/292 (88.01%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLNICDNLADHMIGNVYVQF+EED
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++L
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RRKLFGSRFRGYR---RSRSRSRSLSPRNRKDYDRRERDYRDRDHR---------GNG-R 240
           RRKLFG   R YR   RSRSRSRS+SPRN++D DRR+  +R+  HR         G+G R
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKR 240

Query: 241 SKERPDRYDRDGGR-RRHGSPRRSRSP--VREGSEERRARIEQWNREREEKQ 277
           S ER +R +RDG R RR  SP+R  SP   REGSEERRARIEQWNREREEK+
Sbjct: 241 SSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREEKE 292

[Close]

BLAST of CmaCh01G020460 vs. ExPASy Swiss-Prot
Match: Q6AUG0 (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 1.8e-116
Identity = 227/306 (74.18%), Postives = 248/306 (81.05%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPT+SPT++L+NMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDP K+QEHFEDFYEDIYEEL KFGE+E+LN+CDNLADHMIGNVYVQFREE+
Sbjct: 61  GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEE 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QA AA  ALQGRFYSGRPII ++SPVTDFREATCRQ+EEN+CNRGGYCNFMHVK IG++L
Sbjct: 121 QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL 180

Query: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNR-----KDYDRRERD------------------- 240
           RRKL+G R    RRS  RSRS SPR+R     +D  RRERD                   
Sbjct: 181 RRKLYGGR---SRRSHGRSRSPSPRHRRGNRDRDDFRRERDGYRGGGDGYRGGGGGGGGD 240

Query: 241 -YRDRD-HRGNGRSKER--PDRYDR--DGGRRRHGS-PRRSRSPVREGSEERRARIEQWN 276
            YR  D +RG G    R    RYDR  DGGRRRHGS PRR+RSPVRE SEERRA+IEQWN
Sbjct: 241 GYRGGDSYRGGGGGGRRGGGSRYDRYDDGGRRRHGSPPRRARSPVRESSEERRAKIEQWN 300

[Close]

BLAST of CmaCh01G020460 vs. ExPASy Swiss-Prot
Match: Q9ZQW8 (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 8.5e-111
Identity = 216/293 (73.72%), Postives = 236/293 (80.55%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN+P++SPTLLLSNMY RPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           G+DAQG PIDP KIQ  FEDFYEDI+EEL K+GEIESL++CDN ADHMIGNVYVQFREED
Sbjct: 61  GIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAA ALQAL GR+YSGRPII +FSPV+DFREATCRQYEEN+CNRGGYCNFMHVK IG+DL
Sbjct: 121 QAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGRDL 180

Query: 181 RRKLFGSRFRGYRRSRSRSRSLSP---RNRKDYDRRERDYRDRDH-------------RG 240
           R++LFG   R  RRS S  RS SP     R+DYDRR    R RDH              G
Sbjct: 181 RKRLFGHLHRS-RRSHSHGRSRSPSPYHYRRDYDRRSSS-RSRDHDDYYRGGSHDYYRGG 240

Query: 241 NGRSKER-PDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 277
           + RS ER    YD DG RRRH S  R+RSPVR+GSEERRA+IEQWNRERE  Q
Sbjct: 241 SRRSSERHRSSYDSDGSRRRHRS--RTRSPVRDGSEERRAQIEQWNREREAAQ 289

[Close]

BLAST of CmaCh01G020460 vs. ExPASy Swiss-Prot
Match: A1A4K8 (Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1 PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 9.2e-65
Identity = 133/258 (51.55%), Postives = 172/258 (66.67%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P   + 
Sbjct: 1   MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEEL-GKFGEIESLNICDNLADHMIGNVYVQFREE 120
             D     +   ++QEH+++F+E+++ E+  K+GE+E +N+CDNL DH++GNVYV+FR E
Sbjct: 61  SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120

Query: 121 DQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKD 180
           + A  A+  L  R+++G+PI A+ SPVTDFREA CRQYE   C RGG+CNFMH+K I ++
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180

Query: 181 LRRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDG 240
           LRR+L+G R R   RSRSRSR          +RR R  RDR   G G            G
Sbjct: 181 LRRELYGRR-RKKHRSRSRSR----------ERRSRS-RDRGRGGGG-----------GG 235

Query: 241 GRRRHGSPRRSRSPVREG 258
           G  R    RRSR   R G
Sbjct: 241 GGGRERDRRRSRDRERSG 235

[Close]

BLAST of CmaCh01G020460 vs. ExPASy TrEMBL
Match: A0A6J1IV82 (splicing factor U2af small subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111480904 PE=4 SV=1)

HSP 1 Score: 553.5 bits (1425), Expect = 4.9e-154
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG 240
           RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG
Sbjct: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG 240

Query: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 277
           RRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ
Sbjct: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 276

[Close]

BLAST of CmaCh01G020460 vs. ExPASy TrEMBL
Match: A0A6J1FSM7 (splicing factor U2af small subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC111446512 PE=4 SV=1)

HSP 1 Score: 553.5 bits (1425), Expect = 4.9e-154
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG 240
           RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG
Sbjct: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG 240

Query: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 277
           RRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ
Sbjct: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 276

[Close]

BLAST of CmaCh01G020460 vs. ExPASy TrEMBL
Match: A0A6J1CN17 (splicing factor U2af small subunit B-like OS=Momordica charantia OX=3673 GN=LOC111012985 PE=4 SV=1)

HSP 1 Score: 535.4 bits (1378), Expect = 1.4e-148
Identity = 269/275 (97.82%), Postives = 272/275 (98.91%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+CDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG 240
           RRKLFG R+RGYRRSRSRSRSLSPRNRKDYDRRERD+RDRD RGNGRSKER DRYDRDGG
Sbjct: 181 RRKLFG-RYRGYRRSRSRSRSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGG 240

Query: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEK 276
           RRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
Sbjct: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEK 274

[Close]

BLAST of CmaCh01G020460 vs. ExPASy TrEMBL
Match: A0A6J1F6R3 (splicing factor U2af small subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC111442843 PE=4 SV=1)

HSP 1 Score: 521.5 bits (1342), Expect = 2.1e-144
Identity = 266/278 (95.68%), Postives = 269/278 (96.76%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LN+CDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGSRFRGYR--RSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRD 240
           RRKLFG R RGYR  RSRSRSRSLSPRNRK+ DRRERDYRDR+ RGNGRSKER DRYDRD
Sbjct: 181 RRKLFG-RHRGYRRSRSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRD 240

Query: 241 GGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 277
           GGRRRHGSPRRSRSPVREGS ERRARIEQWNREREEKQ
Sbjct: 241 GGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ 277

[Close]

BLAST of CmaCh01G020460 vs. ExPASy TrEMBL
Match: A0A5A7VFL1 (Splicing factor U2af small subunit B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00280 PE=4 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 7.4e-142
Identity = 264/280 (94.29%), Postives = 271/280 (96.79%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+CDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG 240
           RRKLFG R+RGYR SRSRSRSLSPRNRK+YDRRERDYR+R++RGNGRSKE   R+DRDGG
Sbjct: 181 RRKLFG-RYRGYRPSRSRSRSLSPRNRKEYDRRERDYREREYRGNGRSKE---RHDRDGG 240

Query: 241 RRRHGSPR--RSRSPV--REGSEERRARIEQWNREREEKQ 277
           RRRHGSPR  RSRSPV  REGSEERRARIEQWNREREEKQ
Sbjct: 241 RRRHGSPRRSRSRSPVIAREGSEERRARIEQWNREREEKQ 276

[Close]

BLAST of CmaCh01G020460 vs. NCBI nr
Match: XP_022941119.1 (splicing factor U2af small subunit B-like [Cucurbita moschata] >XP_022941120.1 splicing factor U2af small subunit B-like [Cucurbita moschata] >XP_022941121.1 splicing factor U2af small subunit B-like [Cucurbita moschata] >XP_022981902.1 splicing factor U2af small subunit B-like [Cucurbita maxima] >XP_022981903.1 splicing factor U2af small subunit B-like [Cucurbita maxima] >XP_022981905.1 splicing factor U2af small subunit B-like [Cucurbita maxima] >KAG7037979.1 Splicing factor U2af small subunit A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 553.5 bits (1425), Expect = 1.0e-153
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG 240
           RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG
Sbjct: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG 240

Query: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 277
           RRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ
Sbjct: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 276

[Close]

BLAST of CmaCh01G020460 vs. NCBI nr
Match: XP_023525325.1 (splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >XP_023525326.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >XP_023525327.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 552.0 bits (1421), Expect = 3.0e-153
Identity = 275/276 (99.64%), Postives = 276/276 (100.00%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG 240
           RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDR+DRDGG
Sbjct: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRFDRDGG 240

Query: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 277
           RRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ
Sbjct: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 276

[Close]

BLAST of CmaCh01G020460 vs. NCBI nr
Match: XP_022142994.1 (splicing factor U2af small subunit B-like [Momordica charantia])

HSP 1 Score: 535.4 bits (1378), Expect = 2.9e-148
Identity = 269/275 (97.82%), Postives = 272/275 (98.91%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+CDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG 240
           RRKLFG R+RGYRRSRSRSRSLSPRNRKDYDRRERD+RDRD RGNGRSKER DRYDRDGG
Sbjct: 181 RRKLFG-RYRGYRRSRSRSRSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGG 240

Query: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEK 276
           RRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
Sbjct: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEK 274

[Close]

BLAST of CmaCh01G020460 vs. NCBI nr
Match: XP_023521110.1 (splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >KAG6591187.1 Splicing factor U2af small subunit A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024073.1 Splicing factor U2af small subunit A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 526.6 bits (1355), Expect = 1.3e-145
Identity = 266/276 (96.38%), Postives = 269/276 (97.46%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LN+CDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRDGG 240
           RRKLFG R RGYRRSRSRSRSLSPRNRK+ DRRERDYRDR+ RGNGRSKER DRYDRDGG
Sbjct: 181 RRKLFG-RHRGYRRSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGG 240

Query: 241 RRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 277
           RRRHGSPRRSRSPVREGS ERRARIEQWNREREEKQ
Sbjct: 241 RRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ 275

[Close]

BLAST of CmaCh01G020460 vs. NCBI nr
Match: XP_022936161.1 (splicing factor U2af small subunit B-like [Cucurbita moschata])

HSP 1 Score: 521.5 bits (1342), Expect = 4.3e-144
Identity = 266/278 (95.68%), Postives = 269/278 (96.76%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LN+CDNLADHMIGNVYVQFREED
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGSRFRGYR--RSRSRSRSLSPRNRKDYDRRERDYRDRDHRGNGRSKERPDRYDRD 240
           RRKLFG R RGYR  RSRSRSRSLSPRNRK+ DRRERDYRDR+ RGNGRSKER DRYDRD
Sbjct: 181 RRKLFG-RHRGYRRSRSRSRSRSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRD 240

Query: 241 GGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 277
           GGRRRHGSPRRSRSPVREGS ERRARIEQWNREREEKQ
Sbjct: 241 GGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ 277

[Close]

BLAST of CmaCh01G020460 vs. TAIR 10
Match: AT5G42820.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 455.7 bits (1171), Expect = 2.7e-128
Identity = 237/281 (84.34%), Postives = 256/281 (91.10%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLN+CDNLADHMIGNVYV F+EED
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
            AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRKLFGSRFRGYRR-SRSRSRSLSPRNRKDYDR-RER-DYRDRDHRGNG-RSKERPDRYD 240
           RRKLFG   R YRR SRSRSRS+SPR ++++ R RER D RDRD  GNG RS +R +R+D
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 RD-GGRRRHGSPRRSRSP--VREGSEERRARIEQWNREREE 275
           RD GGRRRHGSP+RSRSP  VREGSEERRARIEQWNRER+E
Sbjct: 241 RDGGGRRRHGSPKRSRSPRNVREGSEERRARIEQWNRERDE 281

[Close]

BLAST of CmaCh01G020460 vs. TAIR 10
Match: AT5G42820.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 455.7 bits (1171), Expect = 2.7e-128
Identity = 237/281 (84.34%), Postives = 256/281 (91.10%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLN+CDNLADHMIGNVYV F+EED
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
            AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRKLFGSRFRGYRR-SRSRSRSLSPRNRKDYDR-RER-DYRDRDHRGNG-RSKERPDRYD 240
           RRKLFG   R YRR SRSRSRS+SPR ++++ R RER D RDRD  GNG RS +R +R+D
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240

Query: 241 RD-GGRRRHGSPRRSRSP--VREGSEERRARIEQWNREREE 275
           RD GGRRRHGSP+RSRSP  VREGSEERRARIEQWNRER+E
Sbjct: 241 RDGGGRRRHGSPKRSRSPRNVREGSEERRARIEQWNRERDE 281

[Close]

BLAST of CmaCh01G020460 vs. TAIR 10
Match: AT1G27650.1 (U2 snRNP auxiliary factor small subunit, putative )

HSP 1 Score: 451.8 bits (1161), Expect = 3.9e-127
Identity = 237/292 (81.16%), Postives = 257/292 (88.01%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120
           GVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLNICDNLADHMIGNVYVQF+EED
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++L
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RRKLFGSRFRGYR---RSRSRSRSLSPRNRKDYDRRERDYRDRDHR---------GNG-R 240
           RRKLFG   R YR   RSRSRSRS+SPRN++D DRR+  +R+  HR         G+G R
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKR 240

Query: 241 SKERPDRYDRDGGR-RRHGSPRRSRSP--VREGSEERRARIEQWNREREEKQ 277
           S ER +R +RDG R RR  SP+R  SP   REGSEERRARIEQWNREREEK+
Sbjct: 241 SSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREEKE 292

[Close]

BLAST of CmaCh01G020460 vs. TAIR 10
Match: AT1G27650.2 (U2 snRNP auxiliary factor small subunit, putative )

HSP 1 Score: 343.2 bits (879), Expect = 1.9e-94
Identity = 187/242 (77.27%), Postives = 207/242 (85.54%), Query Frame = 0


Query: 51  MYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIG 110
           MYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLNICDNLADHMIG
Sbjct: 1   MYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIG 60

Query: 111 NVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 170
           NVYVQF+EEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF
Sbjct: 61  NVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 120

Query: 171 MHVKMIGKDLRRKLFGSRFRGYR---RSRSRSRSLSPRNRKDYDRRERDYRDRDHR---- 230
           MHVK++ ++LRRKLFG   R YR   RSRSRSRS+SPRN++D DRR+  +R+  HR    
Sbjct: 121 MHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDR 180

Query: 231 -----GNG-RSKERPDRYDRDGGR-RRHGSPRRSRSP--VREGSEERRARIEQWNREREE 277
                G+G RS ER +R +RDG R RR  SP+R  SP   REGSEERRARIEQWNREREE
Sbjct: 181 EFYRHGSGKRSSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREE 240

[Close]

BLAST of CmaCh01G020460 vs. TAIR 10
Match: AT1G10320.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 119.8 bits (299), Expect = 3.5e-27
Identity = 98/304 (32.24%), Postives = 150/304 (49.34%), Query Frame = 0


Query: 9   FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQP 68
           FGTE+D+ +CPF+ K GACR G RCSR+H  P  S TLL+ NMY  P  IT   D +G  
Sbjct: 237 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPG-ITWEQD-EGLE 296

Query: 69  IDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREEDQAAAALQA 128
               + +  +E+FYED++ E  K+GE+ +  +C N + H+ GNVYV +R  + A  A Q+
Sbjct: 297 YTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQS 356

Query: 129 LQGRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH-VKMIGKDLR--- 188
           + GR+++G+ +  +F  ++ ++ A C +Y ++    C+RG  CNF+H  +  G D     
Sbjct: 357 INGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIHCFRNPGGDYEWAD 416

Query: 189 -------------RKLFG---SRFRGYRRSRSRSRS---LSPRNRKDYDRRER------- 248
                          LFG    +   +  S S + S   LS  + +   RR R       
Sbjct: 417 HDRPPPRFWIHKMTSLFGYSDEKHMEHESSGSLNDSISDLSTDSHRQPSRRSRSRDHDHA 476

Query: 249 ------DYRDRDHRGNGRSKERPDRYDRDGGRRRHG--SPRRSRSPVREGSEERRARIEQ 272
                  YR R + G+ +   R D+  R       G  SP R  S  RE  +ERR   + 
Sbjct: 477 NVGSTPSYRSRKYHGDTQDSTREDKLRRHAENCHDGDDSPSRDGSLEREMYKERRYAKDT 536

The following BLAST results are available for this feature:

BLAST of CmaCh01G020460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMY5	3.8e-127	84.34	Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B ...	[more]
Q9S709	5.5e-126	81.16	Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A ...	[more]
Q6AUG0	1.8e-116	74.18	Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q9ZQW8	8.5e-111	73.72	Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
A1A4K8	9.2e-65	51.55	Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1 PE=2 SV=1	[more]

BLAST of CmaCh01G020460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IV82	4.9e-154	100.00	splicing factor U2af small subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1FSM7	4.9e-154	100.00	splicing factor U2af small subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1CN17	1.4e-148	97.82	splicing factor U2af small subunit B-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1F6R3	2.1e-144	95.68	splicing factor U2af small subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A5A7VFL1	7.4e-142	94.29	Splicing factor U2af small subunit B-like OS=Cucumis melo var. makuwa OX=1194695...	[more]

BLAST of CmaCh01G020460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941119.1	1.0e-153	100.00	splicing factor U2af small subunit B-like [Cucurbita moschata] >XP_022941120.1 s...	[more]
XP_023525325.1	3.0e-153	99.64	splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >XP_02352...	[more]
XP_022142994.1	2.9e-148	97.82	splicing factor U2af small subunit B-like [Momordica charantia]	[more]
XP_023521110.1	1.3e-145	96.38	splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >KAG65911...	[more]
XP_022936161.1	4.3e-144	95.68	splicing factor U2af small subunit B-like [Cucurbita moschata]	[more]

BLAST of CmaCh01G020460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42820.2	2.7e-128	84.34	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT5G42820.1	2.7e-128	84.34	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G27650.1	3.9e-127	81.16	U2 snRNP auxiliary factor small subunit, putative	[more]
AT1G27650.2	1.9e-94	77.27	U2 snRNP auxiliary factor small subunit, putative	[more]
AT1G10320.1	3.5e-27	32.24	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009145	U2 auxiliary factor small subunit	PRINTS	PR01848	U2AUXFACTOR	coord: 165..177 score: 63.29 coord: 75..90 score: 54.26 coord: 103..125 score: 65.61 coord: 18..37 score: 85.68 coord: 37..57 score: 62.34 coord: 130..154 score: 63.64
IPR009145	U2 auxiliary factor small subunit	PANTHER	PTHR12620	U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT	coord: 1..276
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 148..174 e-value: 0.0087 score: 25.3 coord: 13..39 e-value: 0.0068 score: 25.6
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 150..174 e-value: 1.4E-4 score: 21.7 coord: 14..38 e-value: 2.8E-7 score: 30.3
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 148..175 score: 11.413015
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 12..40 score: 13.065497
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 73..142 e-value: 1.7E-4 score: 30.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 43..145 e-value: 1.4E-30 score: 107.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 83..139 e-value: 1.0E-7 score: 31.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 44..146 score: 11.093571
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 250..276
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..276
None	No IPR available	PANTHER	PTHR12620:SF35	SPLICING FACTOR U2AF SMALL SUBUNIT A	coord: 1..276
None	No IPR available	CDD	cd12539	RRM_U2AF35B	coord: 44..145 e-value: 6.88888E-61 score: 186.031
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 77..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G020460.1	CmaCh01G020460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0089701	U2AF complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0030628	pre-mRNA 3'-splice site binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding