CmaCh01G020340 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh01G020340
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DNA helicase
Location	Cma_Chr01: 12971442 .. 12971714 (+)
RNA-Seq Expression	CmaCh01G020340
Synteny	CmaCh01G020340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGCCCGTATAAAGGCCCATTTTTTGAGCGGAATAGGCGTATATAGCGTAAATGGACCGACTTCGCTCTGGACTTGTAGATCTCTTCGTGTTGAAGATCCTTTCGGTGAAATCTGCAGAAAAATGACGTTGATGAAAGGAGAGCCGCTGGTGAGGAAGCTCGCCGTGTTCGCCAAGTACGTTGTTCTTCCGGGAGCCATGGCCGCAGCTCTCGTTTACTCTCCTCCAGATTATGCTTACTTCAAGAATGACGATAAGTCTTCCAAATAG

mRNA sequence

ATGCAGGCCCGTATAAAGGCCCATTTTTTGAGCGGAATAGGCGTATATAGCGTAAATGGACCGACTTCGCTCTGGACTTGTAGATCTCTTCGTGTTGAAGATCCTTTCGGTGAAATCTGCAGAAAAATGACGTTGATGAAAGGAGAGCCGCTGGTGAGGAAGCTCGCCGTGTTCGCCAAGTACGTTGTTCTTCCGGGAGCCATGGCCGCAGCTCTCGTTTACTCTCCTCCAGATTATGCTTACTTCAAGAATGACGATAAGTCTTCCAAATAG

Coding sequence (CDS)

ATGCAGGCCCGTATAAAGGCCCATTTTTTGAGCGGAATAGGCGTATATAGCGTAAATGGACCGACTTCGCTCTGGACTTGTAGATCTCTTCGTGTTGAAGATCCTTTCGGTGAAATCTGCAGAAAAATGACGTTGATGAAAGGAGAGCCGCTGGTGAGGAAGCTCGCCGTGTTCGCCAAGTACGTTGTTCTTCCGGGAGCCATGGCCGCAGCTCTCGTTTACTCTCCTCCAGATTATGCTTACTTCAAGAATGACGATAAGTCTTCCAAATAG

Protein sequence

MQARIKAHFLSGIGVYSVNGPTSLWTCRSLRVEDPFGEICRKMTLMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYAYFKNDDKSSK

Homology

[Close]

BLAST of CmaCh01G020340 vs. ExPASy TrEMBL
Match: A0A6J5TUT5 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS10256 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.2e-12
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 38 EICRKMTLMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYAYFKNDDKSSK 91
          E+ R+M LM+GEPLV KLAV AKYVVLPGAM AAL+YSPPDY   KND KS+K
Sbjct: 9  ELSREMALMRGEPLVTKLAVLAKYVVLPGAMVAALIYSPPDYTSSKNDPKSTK 61

[Close]

BLAST of CmaCh01G020340 vs. ExPASy TrEMBL
Match: A0A0A0L4N8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664390 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.6e-11
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 43 MTLMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYAYFK---NDDKSSK 91
          M LMKGEPL+RKLAVFA Y+VLPGAMAAAL+YSPPDY Y K    DDKSSK
Sbjct: 1  MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDYIYSKKNEKDDKSSK 51

[Close]

BLAST of CmaCh01G020340 vs. ExPASy TrEMBL
Match: A0A2R6PZ99 (DNA helicase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc23464 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.3e-10
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 43 MTLMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYAYFKNDDKSS 90
          MT M+GEPLV KLAV AKY VLPGAM AAL+YSPPDYAY K  D+ S
Sbjct: 1  MTFMRGEPLVAKLAVLAKYAVLPGAMVAALIYSPPDYAYEKKHDQGS 47

[Close]

BLAST of CmaCh01G020340 vs. ExPASy TrEMBL
Match: A0A5N5H719 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_024959 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.4e-09
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 38 EICRKMTLMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYAYFKNDDKSSK 91
          ++ R M LM+GEPLV KLA  AKYVV PGAMAAA++YSPPDY   KND KS+K
Sbjct: 33 DLSRGMVLMRGEPLVTKLAALAKYVVFPGAMAAAVIYSPPDYT-SKNDPKSTK 84

[Close]

BLAST of CmaCh01G020340 vs. ExPASy TrEMBL
Match: A0A7J6E203 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_018844 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.1e-09
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 36 FGEICRKMTLMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYAYFKNDD-KSSK 91
          FGE   KM  +KGEPL+RKLA+ +KY VLPGAM AALVYSPPD+ Y+ N++ K SK
Sbjct: 33 FGE---KMAFLKGEPLIRKLALVSKYAVLPGAMIAALVYSPPDFVYYSNNNPKPSK 85

[Close]

BLAST of CmaCh01G020340 vs. NCBI nr
Match: KAG7037970.1 (hypothetical protein SDJN02_01603, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 88.2 bits (217), Expect = 3.9e-14
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 0


Query: 43 MTLMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYAYFKNDD 87
          M LMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYAYFKNDD
Sbjct: 1  MALMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYAYFKNDD 44

[Close]

BLAST of CmaCh01G020340 vs. NCBI nr
Match: CAB4267529.1 (unnamed protein product [Prunus armeniaca] >CAB4298007.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-11
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 38 EICRKMTLMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYAYFKNDDKSSK 91
          E+ R+M LM+GEPLV KLAV AKYVVLPGAM AAL+YSPPDY   KND KS+K
Sbjct: 9  ELSREMALMRGEPLVTKLAVLAKYVVLPGAMVAALIYSPPDYTSSKNDPKSTK 61

[Close]

BLAST of CmaCh01G020340 vs. NCBI nr
Match: KGN55532.1 (hypothetical protein Csa_011995 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 5.3e-11
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 43 MTLMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYAYFK---NDDKSSK 91
          M LMKGEPL+RKLAVFA Y+VLPGAMAAAL+YSPPDY Y K    DDKSSK
Sbjct: 1  MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDYIYSKKNEKDDKSSK 51

[Close]

BLAST of CmaCh01G020340 vs. NCBI nr
Match: PSR99489.1 (DNA helicase [Actinidia chinensis var. chinensis])

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-09
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 43 MTLMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYAYFKNDDKSS 90
          MT M+GEPLV KLAV AKY VLPGAM AAL+YSPPDYAY K  D+ S
Sbjct: 1  MTFMRGEPLVAKLAVLAKYAVLPGAMVAALIYSPPDYAYEKKHDQGS 47

[Close]

BLAST of CmaCh01G020340 vs. NCBI nr
Match: KAB2622777.1 (hypothetical protein D8674_024959 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 71.2 bits (173), Expect = 5.0e-09
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 38 EICRKMTLMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYAYFKNDDKSSK 91
          ++ R M LM+GEPLV KLA  AKYVV PGAMAAA++YSPPDY   KND KS+K
Sbjct: 33 DLSRGMVLMRGEPLVTKLAALAKYVVFPGAMAAAVIYSPPDYT-SKNDPKSTK 84

The following BLAST results are available for this feature:

BLAST of CmaCh01G020340 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh01G020340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J5TUT5	5.2e-12	73.58	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS10256 PE=4 S...	[more]
A0A0A0L4N8	2.6e-11	78.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664390 PE=4 SV=1	[more]
A0A2R6PZ99	8.3e-10	74.47	DNA helicase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc23464 ...	[more]
A0A5N5H719	2.4e-09	67.92	Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867...	[more]
A0A7J6E203	4.1e-09	64.29	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_018844 PE=4 SV=1	[more]

BLAST of CmaCh01G020340 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037970.1	3.9e-14	97.73	hypothetical protein SDJN02_01603, partial [Cucurbita argyrosperma subsp. argyro...	[more]
CAB4267529.1	1.1e-11	73.58	unnamed protein product [Prunus armeniaca] >CAB4298007.1 unnamed protein product...	[more]
KGN55532.1	5.3e-11	78.43	hypothetical protein Csa_011995 [Cucumis sativus]	[more]
PSR99489.1	1.7e-09	74.47	DNA helicase [Actinidia chinensis var. chinensis]	[more]
KAB2622777.1	5.0e-09	67.92	hypothetical protein D8674_024959 [Pyrus ussuriensis x Pyrus communis]	[more]

BLAST of CmaCh01G020340 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G020340.1	CmaCh01G020340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004386	helicase activity