CmaCh01G020300 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTTCCCGTTTCCCGTTTCCACGTTCACCTCCAAACCAAAACCGCACTCTCTCGCTATCTTCTGTTCATCTTTGGGACTCAACACAACGATGTCTGCTATATCCAATTCGTTGGTTTTAACGAAAACCCCTCAACTCCAGTTATCAGCTGGTAATTCTCACTCTCTGATTTCTTCAGCATTTGATCTTGTGTTAGATTTTCGTTGTAAGTACACAAGCTCCCCATTTGTTATTTCTTATCCTGTATTTTTTTTCTTTCTTGTATCGATTCAATTTTAGCTGTTGCTCGTGAGTTTCTTTTCCAATTTACACATCTTAGTAACACTTCTCTCTCCGGTTTAATTTTGGGGATGATCTTGTAGTGCGGGAGATTTAGGACTTGTGTTCTCGATTTTTCCATCGCGAAATGCCCTCATTTCCATCGGTAGATACCGGGTTTTCTTCTAATTTTTATATTAAGTTACAGCGAGATTCAAATGTTAGCTACCTGCTACTTTTGACCATCCTCTTAGCTCATAAATCGGTTTTGTGTTCTTACGTAGAAACGGCCTTTTCTAGGAGAAATTTGCGAGGGGAATGTGTATTTTCCTCCATTTTGGTGCAGTTTATGGTGGGCTGTTTATTCTTTCTTGATGATGTCTAAAGGCGCTATTAATCTTATCGTTTTTATTACATCGTGATGATGTCTTGATTTCCAAATTAATGAAAATTTTTGTAACTGTTGGAAGATTGAATTATGATTAGTAGGTAGTTGCTCTCATTTTCATAATTTGGAAGAACTAAGGAGAGTGCACATGTATGTACCCATTAATTGTATTAGTCTAAGTTTACTCTCGCCAATTTTCCTGCCAGGATCAAATCTGAAAACTGCTGATAAACGATTTGGGAGTGTTTCCCCTACCCGCTTGTTACTCAATCCTGGTTGGGTGGGAAAGGCCAAGCTTTCTACATTTAGGCGGCCACTTTCAGTTCAAGCTGCATATAGGTATAATCTTTGAAATCACTAATAAAACGATATGCCATTTAGTCATCTCATATTATAGCATTACAGTCTAGGGAGTCTATTTTTTGAAGAAATTATTATCGATCACTACATTGAGAAACTATTTACGTGGTAGGAATGCATGTTTAGAGTCTTTGTGTGGGTAGGCTTATCATTGTGGTGCACAATAACTGGAAAAGGAACTGCCGTGCTGAGCTGAATTGAATGTGTTAATCTCAGGTAGTTAACAACCATGAACATAACTAATTTTTAGCTGGTTCAAACAGATTTGCAACCAAAGGATGGGCCTGTTTGGTTTGCTATGCTCAAAACTGAGTCTCGTTGATTTGGTCAAAGACTGATCAAATCAACATAATGAAGGCATATAGATTTTCTACCCAAAAGAAGGGAAAAAAATAATAATGAATGTGTGTACTCATCCCATTTTAGATAACCAATTCAAATGAAACAGTTGTTGAATTTTATCTGTTTACTCTGTATGATTACGGTCTGGATTTGTGCCTTCCTATGAGATTTGGCCTTTTGCTCCTAAAATATTTTGGGGGATCAGTGTTTAGAGGCAAGGCCAACATTTTGTGGAATTGTAGTCCATTCTCTCCTTTGGTTAATTTGGAAGGAGAGAACAAATAGGATTTTTAAAGTCAAGGAGGCTACGGTGGATTCTTTTTGTAATCGTGTACAACACTTAGCATTGTGGTGGTGTTCCAAACGAGCTTTTTTTTTTTTTTTGTAATTTTAGTCTTTTGATGATTACTAATGACTGGAAGGCTCCAATGGTCTATTTTCGTGAGGGGGATTTTTCTTCCCGCACTCAGGTTGTTTCTCTCCCTATTTGTCTATAAAGCATCATTCATCGTCCCCAAGCCTAGATTGTTTCTCTATCTCTTTGTCTATAAAGCCTCATTTCTTATACCAAAAAATTACTAATTAATAAATAAACAATAACTCTTAGGGTTGAATAATGTCTAGTCTGTAACAATTGTTAGTAAAGCTTTTCCGAGTGGAAACTAATAATAGTATTCCTATATGTTTCAAATGGACATAGCACAAGTTGATGTCTATTTTATTGTATATGTCTTGATGGGTCCGTCCTATATGCTTCATTTGAAATACTCTGACGGCAGTTTATTATGCACCTTGTGGCAGTGATGGTGGACGGTCAAGCAGTGCAGGCATTTTTATTGGAGGTTTTGTATTGGGAGGGCTCATAGTTGGAACGCTTGGCTGTGTATATGCCCCTCAGGTTTTTAACTTTTTTCATCTCTTATCTAACCTCTAAATTGTACATATGGGAAATTTCACCTAGTATACCTGTTACTTGTGTGCTATGGTTACTATCTTAGGGAAGGTATGTAGAAATATGCACAACTATTGTCTCTGAGCTTCAAGTGCAGAATCCTAGTCTTTTTTATGACTGAGAGTTGATCTTGTGTTTGAATTATAGATTAGCAAGGCACTTGCTGGAACAGACCGAAAAGATTTGATGAGGAAACTTCCCAAGTTCATATATGATGAAGAAAAAGCCGTAGAGGTGCAAAACCACTCATCTCTTTTTATTTGTTGCGAGTGATCTTGTGAATGAACATTTCGTCTTCACTTGACATTGATTTACCCAATCGTGGATTTTATTCGTAACATTGCACTTTCTTCTTAAACACCATGAGTTGGCAGAATGATAATTGGAGCTTGGGAAAGAAAAGGGTTAAGAGGGAATGAGTTCAAAGCATGTGGGCACCTACGTATGATTTTAAAATTCTGTTGGTTTTCTTGGCAACCACTTGTACTAGGATCAAGTAGTTGTCCCATGAGATAAGGTGGCTCGAACATTTGCAGATATAAAATAATAATAATAATAGTAATAAATATATATTCTTTCCAACCAGTCATCAACTTCTCATCAAAGATGCTAAAATGTGTTTGTGTAACTTCAGTTTTGACAATTCTGCGAGGGGGTATTTGAATTTTGCATAAAATTTGTGTAGTATAAGGTCAAAGGAGTACATAAACTGGAATACGAGTTTATATGTATGGATTTACTTATCCTGGGATACGAGTTTTCTAATTTATGGAGCACATAAACTCATATCACATGAATCTAAAACAGTTCTTCTATAGTACATACTAATTTTAACAAATTATAAACCCACCAAAAAAAAAAAAAAAAAAAAAATACAGATTACTGATTCAATTGCACAATTCAAATAAGCTTATCGACTAAATATCCCACTTTCATTTGGTTTATGAGATATGGTTTGTCGGTATTAGTATAAAATATGACTATAATATGTTGTATGTATGTAGTCTAGAAGATTTGCAAGCTTGTGGATCAGGATAAGCAAATCTACACCCATCTAGATTATACAAAACTAATCTATGAACTAAACACAGGGCCCTTTCCAGTAGGATTTGTCTAAAATTTTAAGATAACAATATTTTGTTTTTGATTCTGGATTTTTTTTCCCTTTTAAATCTGAACTTCCTTTATAGAAGAAATATAATATTACGTGCTTTTCTTAAACAGTTCCTGTTCGGTTTTTGATGTGTGAACATGTACTTGCTTTTTATTGAAATTGCAGAAAACAAGAAAAGTGCTGGCACAGAAGATTGAACAGTTGAACTCTGCCATTGATGAGGTTTCTTCTCAGCTCCGTACGGAGGATTCCCCAAATGGAGTGGCCGTAAACTCTGATGAAGTTGAACCTGCCATTTGA TTTCCCGTTTCCCGTTTCCACGTTCACCTCCAAACCAAAACCGCACTCTCTCGCTATCTTCTGTTCATCTTTGGGACTCAACACAACGATGTCTGCTATATCCAATTCGTTGGTTTTAACGAAAACCCCTCAACTCCAGTTATCAGCTGGATCAAATCTGAAAACTGCTGATAAACGATTTGGGAGTGTTTCCCCTACCCGCTTGTTACTCAATCCTGGTTGGGTGGGAAAGGCCAAGCTTTCTACATTTAGGCGGCCACTTTCAGTTCAAGCTGCATATAGTGATGGTGGACGGTCAAGCAGTGCAGGCATTTTTATTGGAGGTTTTGTATTGGGAGGGCTCATAGTTGGAACGCTTGGCTGTGTATATGCCCCTCAGATTAGCAAGGCACTTGCTGGAACAGACCGAAAAGATTTGATGAGGAAACTTCCCAAGTTCATATATGATGAAGAAAAAGCCGTAGAGAAAACAAGAAAAGTGCTGGCACAGAAGATTGAACAGTTGAACTCTGCCATTGATGAGGTTTCTTCTCAGCTCCGTACGGAGGATTCCCCAAATGGAGTGGCCGTAAACTCTGATGAAGTTGAACCTGCCATTTGA ATGTCTGCTATATCCAATTCGTTGGTTTTAACGAAAACCCCTCAACTCCAGTTATCAGCTGGATCAAATCTGAAAACTGCTGATAAACGATTTGGGAGTGTTTCCCCTACCCGCTTGTTACTCAATCCTGGTTGGGTGGGAAAGGCCAAGCTTTCTACATTTAGGCGGCCACTTTCAGTTCAAGCTGCATATAGTGATGGTGGACGGTCAAGCAGTGCAGGCATTTTTATTGGAGGTTTTGTATTGGGAGGGCTCATAGTTGGAACGCTTGGCTGTGTATATGCCCCTCAGATTAGCAAGGCACTTGCTGGAACAGACCGAAAAGATTTGATGAGGAAACTTCCCAAGTTCATATATGATGAAGAAAAAGCCGTAGAGAAAACAAGAAAAGTGCTGGCACAGAAGATTGAACAGTTGAACTCTGCCATTGATGAGGTTTCTTCTCAGCTCCGTACGGAGGATTCCCCAAATGGAGTGGCCGTAAACTCTGATGAAGTTGAACCTGCCATTTGA MSAISNSLVLTKTPQLQLSAGSNLKTADKRFGSVSPTRLLLNPGWVGKAKLSTFRRPLSVQAAYSDGGRSSSAGIFIGGFVLGGLIVGTLGCVYAPQISKALAGTDRKDLMRKLPKFIYDEEKAVEKTRKVLAQKIEQLNSAIDEVSSQLRTEDSPNGVAVNSDEVEPAI Homology
BLAST of CmaCh01G020300 vs. ExPASy TrEMBL
Match: A0A6J1IT36 (uncharacterized protein LOC111480366 OS=Cucurbita maxima OX=3661 GN=LOC111480366 PE=4 SV=1) HSP 1 Score: 321.2 bits (822), Expect = 2.5e-84 Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0
BLAST of CmaCh01G020300 vs. ExPASy TrEMBL
Match: A0A6J1FTW3 (uncharacterized protein LOC111446794 OS=Cucurbita moschata OX=3662 GN=LOC111446794 PE=4 SV=1) HSP 1 Score: 319.7 bits (818), Expect = 7.4e-84 Identity = 168/170 (98.82%), Postives = 170/170 (100.00%), Query Frame = 0
BLAST of CmaCh01G020300 vs. ExPASy TrEMBL
Match: A0A6J1FC82 (uncharacterized protein LOC111442778 OS=Cucurbita moschata OX=3662 GN=LOC111442778 PE=4 SV=1) HSP 1 Score: 296.6 bits (758), Expect = 6.7e-77 Identity = 155/170 (91.18%), Postives = 163/170 (95.88%), Query Frame = 0
BLAST of CmaCh01G020300 vs. ExPASy TrEMBL
Match: A0A6J1IGB6 (uncharacterized protein LOC111474436 OS=Cucurbita maxima OX=3661 GN=LOC111474436 PE=4 SV=1) HSP 1 Score: 292.0 bits (746), Expect = 1.6e-75 Identity = 153/170 (90.00%), Postives = 161/170 (94.71%), Query Frame = 0
BLAST of CmaCh01G020300 vs. ExPASy TrEMBL
Match: A0A1S3BV81 (uncharacterized protein LOC103493844 OS=Cucumis melo OX=3656 GN=LOC103493844 PE=4 SV=1) HSP 1 Score: 290.0 bits (741), Expect = 6.3e-75 Identity = 151/170 (88.82%), Postives = 161/170 (94.71%), Query Frame = 0
BLAST of CmaCh01G020300 vs. NCBI nr
Match: XP_022981122.1 (uncharacterized protein LOC111480366 [Cucurbita maxima]) HSP 1 Score: 321.2 bits (822), Expect = 5.2e-84 Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0
BLAST of CmaCh01G020300 vs. NCBI nr
Match: XP_022941515.1 (uncharacterized protein LOC111446794 [Cucurbita moschata]) HSP 1 Score: 319.7 bits (818), Expect = 1.5e-83 Identity = 168/170 (98.82%), Postives = 170/170 (100.00%), Query Frame = 0
BLAST of CmaCh01G020300 vs. NCBI nr
Match: XP_023521457.1 (uncharacterized protein LOC111785280 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 319.3 bits (817), Expect = 2.0e-83 Identity = 167/170 (98.24%), Postives = 170/170 (100.00%), Query Frame = 0
BLAST of CmaCh01G020300 vs. NCBI nr
Match: KAG6608647.1 (hypothetical protein SDJN03_01989, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 317.4 bits (812), Expect = 7.6e-83 Identity = 167/170 (98.24%), Postives = 169/170 (99.41%), Query Frame = 0
BLAST of CmaCh01G020300 vs. NCBI nr
Match: XP_022936063.1 (uncharacterized protein LOC111442778 [Cucurbita moschata]) HSP 1 Score: 296.6 bits (758), Expect = 1.4e-76 Identity = 155/170 (91.18%), Postives = 163/170 (95.88%), Query Frame = 0
BLAST of CmaCh01G020300 vs. TAIR 10
Match: AT1G42960.1 (expressed protein localized to the inner membrane of the chloroplast. ) HSP 1 Score: 171.0 bits (432), Expect = 8.1e-43 Identity = 84/113 (74.34%), Postives = 102/113 (90.27%), Query Frame = 0
BLAST of CmaCh01G020300 vs. TAIR 10
Match: AT5G16660.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 78.2 bits (191), Expect = 7.2e-15 Identity = 54/122 (44.26%), Postives = 73/122 (59.84%), Query Frame = 0
BLAST of CmaCh01G020300 vs. TAIR 10
Match: AT5G16660.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02900.1); Has 106 Blast hits to 106 proteins in 32 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 70.9 bits (172), Expect = 1.1e-12 Identity = 53/122 (43.44%), Postives = 72/122 (59.02%), Query Frame = 0
BLAST of CmaCh01G020300 vs. TAIR 10
Match: AT3G02900.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16660.1); Has 80 Blast hits to 80 proteins in 21 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 66.6 bits (161), Expect = 2.2e-11 Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 0
BLAST of CmaCh01G020300 vs. TAIR 10
Match: AT3G02900.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16660.1). ) HSP 1 Score: 66.6 bits (161), Expect = 2.2e-11 Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|