CmaCh01G018610 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh01G018610
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr01: 12237489 .. 12239544 (+)
RNA-Seq ExpressionCmaCh01G018610
SyntenyCmaCh01G018610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTATATTATGACAACGCTCTCGGACTTGGAACAGGAGTGTTCCCATCGCTGGATGATGCACGATGGGGCGTCGAGCGAATGCGCACGAGCTGTTCGACGAAATGCGAAGGGGATTGCGGCAATGGTTATGCGATTGAAATGGCTCTAAGAAACATGTAAGTGTTTGTGGCTACCTACTTTATTCATTATGCGGAGGTTTAATTATTGAAGTACGCAAAATAGTTAAAGGCTATTGAAGAACTTAGCTGACCCGATTGTTTTGGAATTGAAATAAGCAGTAGTGTCAACCCCACTGCATTCAGGAAAGGGTCCCCCAATTATTAATTTGCTCCCATACTTGGAAAGCTTATTGATTTATTACTTTTGTTAATCATGCTGCGTTAAAATATTTCTGCTTTCATGTCTCTATGTCTCTATCACGTGGTTGTGAGTTCCTACTTTGATGTCCCGTAAGTTTTTTTTTTTTTTTAAGTTGTTTTTAATCGAAAAGTGACCATTTGTATTATGAGGCAGCATCCATTACATGTGTAAGTGACAAACTAGCCAAAATTTGCTTTTCAAAAGACAGAGATTTCATTATTGAAGATTGTTTTTCCAGCGCTTCAAATTGATTGTTATTGACATACGCACTGAGGAGCTTAAAGGGAAATTTGGACATTGTGTGAGTAGTGGGGTTTGCTTTGAACGCATTGGTTGATTTTTTTTAGAGATAAAGAGGCTGTGGAGGAGGGGTTAGTTTTTAAGTAAGGAATTCATTTCCATTTGTGAGACTTTTGTAGAAACTAAAAGTAAAGTTACGAGAGTTTATGTTCAAAGTAGATAATATTATATTATTGTGGAGGTCCGTGATTCATAACTTAGTATCAGAGTCATGCCCTTAATTTAGTCATGTCAATAGAATCATCAAATGTCGAACAAAAAAGTTGTAAGCCTCAAAGATATAGTCAAAAGTGACTCAAGTGTGGAATAAATGATGTACTTTGTTTGAAGACTCTAGAGAAAAAGGAGTCGAGCCTCGATTAAGGGGAGGTTGTTCGAGGACTCCATAGGCTTCAGAAGAAGCTCTATAGTGTACTTTGTTCGAGGAAAGGATTGTTGGGAGAGGAGTTATCGACTAAGTAAGGGATTTATCATAAATTTATAAGTAAGGAAAATCAAAAATAAAGTCACAAGGGTTTATGGTTAAAGTGAACAATAACATACCATTACGGAAATCTGTGATTCATAATAGAGGCTTCATTTGTTATCGATTAGCCTTTTTTGATGGATAAGGAAGAAAAGTTGACAGGGAGCATTGTCGAGTGACATAAATTGGTAACAGATGAACACTCTGTTTTCTTTCCATGTTTTCAAGCCAGGTCTGAAAATGCAAATCAGTTAGGATTCATATTTGATGGACATAGCAGAAATGGTATGAATATTTCTTGAAATGAAAGGATTACTATAATAAGGTTTGGTATTAGGTAAGTAATAAAGAACGAATACCAATATTATATTATGATCAAGCCAGGCAATTCTTGAGCAGTCCTGCTTTGGATCTTCCAAAACAAGTCCAATGTATTAAAGAGTTGGCAAGCATGCTACCCTTGCAATCTTTGCCGTGAAATTCATTGCTCATTACATTTTAATCGTTTATTAAGTAGTTTTTAAGAAATGACGGAGTAAGTTGGCTTCGAAAGAGGTAGATTGTGAGATTCTACCTATATTGGAGAGGGAAACTAAGCATTCTTTATAAGTGTGTGTAAATCTCTCCCACTAATTGACAATTTAAGAAATTTTGAGGAGAAGTCAAAAGAAAAGTCGAAAGAAAATTATCGGTAAGTTTGGGTTGTTACAAAAATAATCAATAATGCCTCTGACAAAAATCGCACGTCCAAAGTCGTAAACACTCTGAACCCACATGGGATTTGAAAGTGAATTCCGAAAGGAAAGAAAGAGGGTAAAAAACAAAGGATATAAAGGAGATGGGGTTCGAAAGAGAAGGCACACGTTGTTCCATGATGACGAGGGCATGTTGTGGACCATAGCCGCGGCATATGCAAGAGCTGTTTGA

mRNA sequence

ATGTTATATTATGACAACGCTCTCGGACTTGGAACAGGAGTGTTCCCATCGCTGGATGATGCACGATGGGGCGTCGAGCGAATGCGCACGAGCTGTTCGACGAAATGCGAAGGGGATTGCGGCAATGGTTATGCGATTGAAATGGCTCTAAGAAACATTGAATTCCGAAAGGAAAGAAAGAGGGTAAAAAACAAAGGATATAAAGGAGATGGGGTTCGAAAGAGAAGGCACACGTTGTTCCATGATGACGAGGGCATGTTGTGGACCATAGCCGCGGCATATGCAAGAGCTGTTTGA

Coding sequence (CDS)

ATGTTATATTATGACAACGCTCTCGGACTTGGAACAGGAGTGTTCCCATCGCTGGATGATGCACGATGGGGCGTCGAGCGAATGCGCACGAGCTGTTCGACGAAATGCGAAGGGGATTGCGGCAATGGTTATGCGATTGAAATGGCTCTAAGAAACATTGAATTCCGAAAGGAAAGAAAGAGGGTAAAAAACAAAGGATATAAAGGAGATGGGGTTCGAAAGAGAAGGCACACGTTGTTCCATGATGACGAGGGCATGTTGTGGACCATAGCCGCGGCATATGCAAGAGCTGTTTGA

Protein sequence

MLYYDNALGLGTGVFPSLDDARWGVERMRTSCSTKCEGDCGNGYAIEMALRNIEFRKERKRVKNKGYKGDGVRKRRHTLFHDDEGMLWTIAAAYARAV
Homology
[Close]
BLAST of CmaCh01G018610 vs. NCBI nr
Match: KAG7037818.1 (hypothetical protein SDJN02_01449, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102.1 bits (253), Expect = 2.9e-18
Identity = 48/60 (80.00%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 1  MLYYDNALGLGTGVFPSLDDARWGVERMRTSCSTKCEGDCGNGYAIEMALRNIEFRKERK 60
          MLYY NAL L TGVFPS+DDARWG   MRTSCSTKCEGDCGNGYAIEMALRNI     RK
Sbjct: 1  MLYYHNALRLRTGVFPSVDDARWGRANMRTSCSTKCEGDCGNGYAIEMALRNIFEEMNRK 60

[Close]
BLAST of CmaCh01G018610 vs. NCBI nr
Match: XP_038899841.1 (uncharacterized protein LOC120087065 isoform X1 [Benincasa hispida])

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-07
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 0 

Query: 43  GYAIEMALRN-------IEFRKERKRVKNKGYKGDGVRKRRHTLFHDDEGMLWTI 91
           G  +EM LRN       +  +K+ KR + KGYKGDG+RKRRHTLFHDD  MLWTI
Sbjct: 82  GATVEMPLRNKLNYILKVYSQKKEKRARKKGYKGDGLRKRRHTLFHDDADMLWTI 136

[Close]
BLAST of CmaCh01G018610 vs. NCBI nr
Match: XP_038899842.1 (uncharacterized protein LOC120087065 isoform X2 [Benincasa hispida])

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-07
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 0 

Query: 43  GYAIEMALRN-------IEFRKERKRVKNKGYKGDGVRKRRHTLFHDDEGMLWTI 91
           G  +EM LRN       +  +K+ KR + KGYKGDG+RKRRHTLFHDD  MLWTI
Sbjct: 66  GATVEMPLRNKLNYILKVYSQKKEKRARKKGYKGDGLRKRRHTLFHDDADMLWTI 120

The following BLAST results are available for this feature:
BLAST of CmaCh01G018610 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh01G018610 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh01G018610 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037818.12.9e-1880.00hypothetical protein SDJN02_01449, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_038899841.11.0e-0758.18uncharacterized protein LOC120087065 isoform X1 [Benincasa hispida][more]
XP_038899842.11.0e-0758.18uncharacterized protein LOC120087065 isoform X2 [Benincasa hispida][more]
BLAST of CmaCh01G018610 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G018610.1CmaCh01G018610.1mRNA