CmaCh01G017470 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh01G017470
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr01: 11800513 .. 11800780 (+)
RNA-Seq ExpressionCmaCh01G017470
SyntenyCmaCh01G017470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGTGAAACTCCGGGATCCGTACAAGTTAGAGCCGTCGTTCTCCTCCGTCAGTACGGCCATGTCCAGCAGAGTACTTAAGGCTGCAGGCTTTATTGAAGGGACTGATAGTGAAATAATGATTTTCTTTATTGTAATAAATATGTGGTCAGAATCAGAAAATTACAAAAGTAGAAGGATCAATAGAATATACTTTTTCTTTATAATTTTAGATACAAAAATTTGTTGTCAAATGGGATATGGCCGAGGTTAATTATGGAAAATGA

mRNA sequence

ATGTCGGTGAAACTCCGGGATCCGTACAAGTTAGAGCCGTCGTTCTCCTCCGTCAGTACGGCCATGTCCAGCAGAGTACTTAAGGCTGCAGGCTTTATTGAAGGGACTGATAGTGAAATAATGATTTTCTTTATTATACAAAAATTTGTTGTCAAATGGGATATGGCCGAGGTTAATTATGGAAAATGA

Coding sequence (CDS)

ATGTCGGTGAAACTCCGGGATCCGTACAAGTTAGAGCCGTCGTTCTCCTCCGTCAGTACGGCCATGTCCAGCAGAGTACTTAAGGCTGCAGGCTTTATTGAAGGGACTGATAGTGAAATAATGATTTTCTTTATTATACAAAAATTTGTTGTCAAATGGGATATGGCCGAGGTTAATTATGGAAAATGA

Protein sequence

MSVKLRDPYKLEPSFSSVSTAMSSRVLKAAGFIEGTDSEIMIFFIIQKFVVKWDMAEVNYGK
Homology
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BLAST of CmaCh01G017470 vs. NCBI nr
Match: KAG7037728.1 (putative protein phosphatase 2C 72, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.5 bits (210), Expect = 1.8e-13
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 1   MSVKLRDPYKLEPSFSSVSTAMSSRVLKAAGFIEGTDSEIMIFFIIQKFVVKWDM 56
           M VKLRDPYKLEPSFS+V TAMS RVLKAAGFIEG+DSEIM    IQKFVVKW+M
Sbjct: 304 MWVKLRDPYKLEPSFSAVGTAMSGRVLKAAGFIEGSDSEIM----IQKFVVKWNM 354

The following BLAST results are available for this feature:
BLAST of CmaCh01G017470 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh01G017470 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh01G017470 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037728.11.8e-1381.82putative protein phosphatase 2C 72, partial [Cucurbita argyrosperma subsp. argyr... [more]
BLAST of CmaCh01G017470 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G017470.1CmaCh01G017470.1mRNA