CmaCh01G017380 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh01G017380
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr01: 11757824 .. 11761776 (+)
RNA-Seq Expression	CmaCh01G017380
Synteny	CmaCh01G017380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCATGGGTTATTGTGGCTCCGAACACTCAGATGAAGGCGTTCGGGAGATTTGAGTGTGTTGATTCTCCAGGGAAGCCTGCGCCGCGTGTGGAAATGGCGAAAACGTCGGTACAGTTCAGATCACGAGGGCTTAGATTTATGGCAGGTAATGAAAGGATCTCTCTCTTTGTGACAGTATAGTTCTATTAAATTATCGATTATGTGTGATTAATGCAATGTAAAATCTGAAAGGATGCTGGTAATTGGCCAAACTTTTCAGAGACGTAACATTTGGTGCAAGACTCTGATTCAACACCAGAAATGTTACAAACCAAGCTTGTTGTAGATTTATTAATCCGTTTTATGTACGATAAGGCACATTTCGTAGCTTGTTGGATTATAATTTTCAGGAGGTGTTCAGAATCTAACTGGTTTGACACTTTCCTCTTGCTGTTGCCTCGATAATTTCTTTTGATGTGGATCAACTATCTATTTGGCTCATTCAAATCCCTAGAAATTGAGGTTAGATTGTTTTTGGTGCTTGCTCTACCTCTATTACTTCATCTGAGAATTTCAAGGATAAACGAAGAAATAGACAGATTTAGACTGAGCTTCATACTCTGGATGATACTCTGATAAAGATCTTGAAATAAGCTATGGTTTCAATCCATTAGGAGATTAGATTTCTTATTATTAGATTACATAGTTTCTTTTTGCCCGTTTCAGTTCACTTGTTCATGTGCTATAACCATTTAGAGGCACTGTAACGCAGTTTTTCTTCTCATTATTTGTTTATCATTGATATCGACTTTTCAATTCAGATCCCATTTGAACTGCTCAGCCGATGCCTTGGAATTTTGCCGGACAGAGGATACCAACACCACAATTTGTATATTATATCAGTGTCAGCACACCGGACTGCTTCTTCCCGGTACTGCTATGTTTTAAATGAAAATTCTCCTAGAAATTCCTTTCAAGGGGTCAGTACTTCGCCATGGCTTTGGATATGCATTTGAATACTTGGATATGCATTTGAATACTTGGATATGGGGTTATGCCGTCTGATCTTATCCTGTTTGTGGGTGATATTCTGATGCTATCTTACCTGTTAGTTGTTTTTCTACCTTGAACCTGTCTCTTAATTCATAATAGTTTTCATTAAATGTCACAGCTCCGAATACCATCTTGACATAACCTTAGTGTTCGTCTTAATTTTGCTGATGATCTTACATTTTTGTAGATAGTGAAGATGGGATGGGATCTGATGGTTCGCTGAGGCATCAAAGGTTACGATCAAGTACATGAAAATGTTCAGTGGGTCATAGATAATCTTGGATGAAGTGAACGAGGATTATTGGGAGGGAGTTTCATATTAGCTAATTTAGAGAATAATCATGGGTTTATAAGCAAGGAATACATCTCGATTGATATGAGATACTTTGGGGAAGCTTAAAGTAAAGCCATGAGAGCTTATGCTCAAAGTTGGACAATATCATACTATTGTAGAGAGTCGTGATTTCTAACATGATGCATCTCTCAAAATTCTGGTCGAATGCAGTGTCATACCAAAAATTTAGCCTGAATACTGTTGGGGTGCCAAACTTCTGGTTGGACCCCAAGTTTCATGTGCCAAGAATGTCTGGCCATTTCCAGGCACCATCCTATTTGGTATCCATTAGGAAATGAAATCAAGGAGTCATCCATTGGAAGTGGAACAACTCTATCTCTCTGTTCAATTACAAGTAAATTCTGTGTTCTAAATGGCTTTTCAACAAGTCGTTTTTTTCAGTATCTAAGTTGAAAATAGAACTCAAATTGCTGTTTGTTGTCCAATAACCTCGAAGTAGCTCTAATTGCAGGGTGCTTTGGAAGAAACCATATTCTGGGCAGGCGAGAATCAGAAGCTTTCCCAACGCCATGGCTATATACACCAAAGTTTCGGTTGGTTTGATTCTTGCACTCTTTGCCTTTTCTGTTAACGTTGATACCTCGCATTGGAATCTCATCTTTCGAGGGCTAAATCAAACCACACTCGTTCTAACATGCTTGTATTTCATATGTCATGTTGGCTTAGCACAAAAATGACAATTTAGCTTCATCATCTGTTCATGCTTCACAGGGCCAACAGATTACGATTCCTCGTTGCATTCATGAATAGAAGAGGTATTAATGTATCAACTAATTATGTCGTGTTTAGGTCTGCATGCAAGGTTGTTATCCGAACGATCGGCTCATCTATGATAAATCTTTGTGTAGTCGGGGGACAACGGAATACACTATTAATCATCGATCATCCCCTGGGTTTGTTCACATATTCTTGCTTAGTTTGTATTCCAGCGTGAGATCTCACGTCGGTTGGAAAGAAAAACAAAACATTCCTAACAGACGCGTTTTAAAGCTGTGAGATATTGACGGCAAACAATATCTGCTAGCGGTGAACTTGGACTATTACAAATGGCATCAAAGTCAGACACTGGACGGTGAGTGGCGAGGATAGTGGCTCCCAAAGGGGTGGATTGTAAGATCCCCATAATTACGATATCCTTTTGGCAAGAACTAACTTTGCTCTTACTAAAATTTTTAGGCGGCAATGTTACTAAAATTTGGCAGGGAGGTAAATCTAGGGGGGTTTGATTTATTTCTTTATTTAGATTAGTTACCTACTATAGTTACTATTACTATTACTATTTAGACTTTTTTCTTTAGTAATATTCGTGGCTGCTACAATTGCGGCGTGGTAAATTTACGAACAGACAGCCACTAAAATAATATTTTATGTAAATTTAATACAAATAGAGAGCACGAGAACGTAAGAAGATTAATTTAAACGGAAATAATAATAAAATACGACCGTCCTACCTAGCGTAACAAATTTATCGATGCCTTTTTTAATTAAAAAAAAAAAAGAATTAAAAAAAAAAGAAGCAATGGTCCGAGGTTTGGGAAATTTAAATATTGGATTTGGACACGTAAGAAATGAGCTGGCAATTGCCATCTCCACGCTACTGTTGTATACTTGCAATGACCTCAAACAAACGTGGCTTAGTCAGCATAAAATCAATTAAACAAAATTAACAAAAGTAAATTGTTAAGTTAATTTCAAGTAATAAGTTTAATTAAGATCTTTTAATTATTTTAAAATTTTAAAAATACCCATATATTAAAAAATATCCATAAAATTTCTTTAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATGTATATTGACTTCAGATTATCTCTACCATTTAAAAGTTTTTTAAAAATTTTAAGGAAATTAATAAAATTTTAAAAAATTTAATGGCATTTTTCGAAAAATTGAAAAGTTAAATGATATTTTTGAAAGCAATATTATATAAGGTTACTTTTCAAATCAAATAAAATGTATATTAATCGTGATATCATTTAAAATTTAACCTCAAACGATGCTAACTGTCCGATCCGTTTACTTTCTTAGATTCCAAGTTAATAATATCTATTAAGAAATGAAATCGAGTGTTTTGCTTCAATTGTGTACACTCTTGCAGCGTTGAACCCGCCTGTTTCTGATGATCAAACGGATAAGAGGGAGCTGAAAATGGAGGCGAACCGACAGAGATGGGGACCCAGCTGA

mRNA sequence

AATCATGGGTTATTGTGGCTCCGAACACTCAGATGAAGGCGTTCGGGAGATTTGAGTGTGTTGATTCTCCAGGGAAGCCTGCGCCGCGTGTGGAAATGGCGAAAACGTCGGTACAGTTCAGATCACGAGGGCTTAGATTTATGGCAGAAATTGAGATCCCATTTGAACTGCTCAGCCGATGCCTTGGAATTTTGCCGGACAGAGGATACCAACACCACAATTTGTATATTATATCAGTGTCAGCACACCGGACTGCTTCTTCCCGGCACCATCCTATTTGGTATCCATTAGGAAATGAAATCAAGGAGTCATCCATTGGAAGTGGAACAACTCTATCTCTCTGTTCAATTACAAGGTGCTTTGGAAGAAACCATATTCTGGGCAGGCGAGAATCAGAAGCTTTCCCAACGCCATGGCTATATACACCAAAGTTTCGGGCCAACAGATTACGATTCCTCGTTGCATTCATGAATAGAAGAGCGTTGAACCCGCCTGTTTCTGATGATCAAACGGATAAGAGGGAGCTGAAAATGGAGGCGAACCGACAGAGATGGGGACCCAGCTGA

Coding sequence (CDS)

ATGAAGGCGTTCGGGAGATTTGAGTGTGTTGATTCTCCAGGGAAGCCTGCGCCGCGTGTGGAAATGGCGAAAACGTCGGTACAGTTCAGATCACGAGGGCTTAGATTTATGGCAGAAATTGAGATCCCATTTGAACTGCTCAGCCGATGCCTTGGAATTTTGCCGGACAGAGGATACCAACACCACAATTTGTATATTATATCAGTGTCAGCACACCGGACTGCTTCTTCCCGGCACCATCCTATTTGGTATCCATTAGGAAATGAAATCAAGGAGTCATCCATTGGAAGTGGAACAACTCTATCTCTCTGTTCAATTACAAGGTGCTTTGGAAGAAACCATATTCTGGGCAGGCGAGAATCAGAAGCTTTCCCAACGCCATGGCTATATACACCAAAGTTTCGGGCCAACAGATTACGATTCCTCGTTGCATTCATGAATAGAAGAGCGTTGAACCCGCCTGTTTCTGATGATCAAACGGATAAGAGGGAGCTGAAAATGGAGGCGAACCGACAGAGATGGGGACCCAGCTGA

Protein sequence

MKAFGRFECVDSPGKPAPRVEMAKTSVQFRSRGLRFMAEIEIPFELLSRCLGILPDRGYQHHNLYIISVSAHRTASSRHHPIWYPLGNEIKESSIGSGTTLSLCSITRCFGRNHILGRRESEAFPTPWLYTPKFRANRLRFLVAFMNRRALNPPVSDDQTDKRELKMEANRQRWGPS

Homology

[Close]

BLAST of CmaCh01G017380 vs. ExPASy TrEMBL
Match: A0A6J1J4S9 (uncharacterized protein LOC111481253 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481253 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.3e-13
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 1  MKAFGRFECVDSPGKPAPRVEMAKTSVQFRSRGLRFMAEIE 42
          MKAFGRFECVDSPGKPAPRVEMAKTSVQFRSRGLRFMA+ E
Sbjct: 1  MKAFGRFECVDSPGKPAPRVEMAKTSVQFRSRGLRFMADSE 41

[Close]

BLAST of CmaCh01G017380 vs. ExPASy TrEMBL
Match: A0A6J1J4I2 (uncharacterized protein LOC111481253 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481253 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.3e-13
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 1  MKAFGRFECVDSPGKPAPRVEMAKTSVQFRSRGLRFMAEIE 42
          MKAFGRFECVDSPGKPAPRVEMAKTSVQFRSRGLRFMA+ E
Sbjct: 1  MKAFGRFECVDSPGKPAPRVEMAKTSVQFRSRGLRFMADSE 41

[Close]

BLAST of CmaCh01G017380 vs. NCBI nr
Match: XP_022982423.1 (uncharacterized protein LOC111481253 isoform X1 [Cucurbita maxima])

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-12
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 1  MKAFGRFECVDSPGKPAPRVEMAKTSVQFRSRGLRFMAEIE 42
          MKAFGRFECVDSPGKPAPRVEMAKTSVQFRSRGLRFMA+ E
Sbjct: 1  MKAFGRFECVDSPGKPAPRVEMAKTSVQFRSRGLRFMADSE 41

[Close]

BLAST of CmaCh01G017380 vs. NCBI nr
Match: XP_022982424.1 (uncharacterized protein LOC111481253 isoform X2 [Cucurbita maxima])

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-12
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 1  MKAFGRFECVDSPGKPAPRVEMAKTSVQFRSRGLRFMAEIE 42
          MKAFGRFECVDSPGKPAPRVEMAKTSVQFRSRGLRFMA+ E
Sbjct: 1  MKAFGRFECVDSPGKPAPRVEMAKTSVQFRSRGLRFMADSE 41

The following BLAST results are available for this feature:

BLAST of CmaCh01G017380 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh01G017380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J4S9	9.3e-13	95.12	uncharacterized protein LOC111481253 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1J4I2	9.3e-13	95.12	uncharacterized protein LOC111481253 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CmaCh01G017380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022982423.1	1.9e-12	95.12	uncharacterized protein LOC111481253 isoform X1 [Cucurbita maxima]	[more]
XP_022982424.1	1.9e-12	95.12	uncharacterized protein LOC111481253 isoform X2 [Cucurbita maxima]	[more]

BLAST of CmaCh01G017380 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G017380.1	CmaCh01G017380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane