CmaCh01G016190 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh01G016190
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionHistone H2A
LocationCma_Chr01: 11121258 .. 11125993 (-)
RNA-Seq ExpressionCmaCh01G016190
SyntenyCmaCh01G016190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCAGTGGTCAAAAGAAGCTAAAGGATCCAGTGGTCACTTGACAAGGTGCAAAAATGTTTGAATGGGATTTGGAAATTGAATGACACTATAAAATTATTCACGATAAACCATGTTGGATTATTTTGTGCATATGCAATAAAATGATTTAATTCTTGATGCAAAATTTTCAAAGTTGATATTTGGTGCCTATTTAACTCCGTGCATGAAAGTTATAGATTGGCCTACCAAATTTGGATCATGCAATATTATTTTAGATTATTCTATTCATACAATTTGATTTCTAAGAACAACAAGCTAGAATGAGTTCTATTTACACGTCAAACTTTACCAAATGTTCACTTTCAATGGTTTCTAATTATCCATATCTCATCAGTTTGACATTATTTCTCATATTTCATTTGCTAATGCTGAAGGTTTTGGTTAGTAACTATGTTGTGAAAATTTCAGATGGAAATGGAGGACGTAGACGAAGACAATAAAGTTGAGGTCATTCTACAAGGAATCCAACTCTGGTTGCTACTTTCAATGCCTCCATCATGTAAGTAATTTTCTACTTGACATCATGAACTACCATACGTGTGACTGCAATGTTATGGTCCTAATAAGGTTAGATTACTACGTTTAATCTTTATTATGTCTTTGTTTTTCTTTTTTAATGTTCCTTGTGCTGCCGATGTCATGTTTTTGTTTCAAGAGTAAATGGTTAAACTACAATAAAGGATTGTAATGAGTGTAGTTGAAAGAGGTTCATGAGTAAGGAATTAAGTTACATTTATGGGTGTTTTAGGTGTTAGGAATAGTTTTTCATTTTTTATGTTTCAAAGGTAAAGTGAAGCTTTCGTTGTGATCAAATGAAAGAATACAAGAGGAACACTAGAAAACCACCCAAAGAGGAGCCCAATTGACCTGAAAAAAATGCTCCAATCAAACAAAATAAGACTTAAGGGTAATTACAAAAAATTGTAAACATCCTTCCACACAGACGTGTGATCTAATAAGGCTACACCTCACCCCAAGGTCTTCCAATCTCTTTAAAAATCCTCTGGTTTCTTTCAACAGAAAACAACCTCTTCTTCTTGAAAAGGGGATGAAGAAGAAGCTCTTCCACCATGGAACTACAATCTGTAGGTTGGGCAAGACCACAGGAGAGATGGTTTAGATCCTCGGTCATTCCTTACTAAAGATACAACACTAGGGCCTAATCTAAAGGGGCGAATTCCTTTTTGTCTAAAGAGTTCTTGTGATTCTTTGAATTGGAGATCATGATTAAGCAACTAAGGAAGGAGATTTATTTTAGGGCAAGTGAGAGAAAGGGGTTGTAAAGATTTGCACTACAACAATAGATGTTACGGTTATCAATGAAGTTGTGTAGTATTGTAAAGTACGAGTGGTAAAGTACAACATTTTATTTGTTGAGATTATGGTTATGTATTCAAGGAATAAGAAAGATACTTCGTAAGGATAAAGGAATTTTGTGTAATATCTCATAAGACATTTGAAGAATGAAAGAATATCAATCAAGGACAGTTGGAAAGCTAAAAATTATTTGGATCAAGGAATAAGGGATGAGAAAAAGTGGTTTGCAAAATTTTGGAGAAAGAAAACACTAGAATGAAAGGATTTGCTTGAATTGGTGCTAAAAAGTGGTTAGTCGATCTGGGACTTTCATCATCCACCAACATTGTTAATTTAGGGAATGATCATGAGTTTATAATCAAGGAATACTCTCTCCATGGAGTGAGGCCTTTTGGGGAAGCCAAAGCAAAGCCATGAGAGCTTATGTTTTGGAAATTATATGTACTCACGGTAATTGAGGACGGTTTGTTTGTGAATGACTTAGATAGCATTAGATATTATGTTCTTGAGAGGTATAAATTACATGTACTAATGTGTTTGTGAAATGACTTCCATTTCCATTTGGTTGATGTAGAGTAGTTATTTTATACCAAATTGGAGATCTCTTGGTATATGATTGATTTTCAGTTTTACTGGTAATTACGAAGAATTCTTTGGAAAGCTTATTTTGGAATAATAGGGTATCAAGAAGTTTTATTGAAGGTTGGTTGTTAGAAGTTTTAAGAGGTTGACGGTAACGGTCCAAGTCCACTTTGGCTAGCAGATATTGTCGTCTTTAAGCTTTTTCTTTTGGGTTTTCTCTCAAGGTTTTTAAAACACATTTGCTAGCAGATATTGTCGTCTTTAGGCTTTTTCTTTTGGGTTTTCCCTCAAGGTTTTTAAAACACATTTGCTAGGGAGAGGTTTCCACACATTTATAAAAAATGTTTCATTCTCCCCAACCGATATGCGACCTCACAATTCACCCCTCTTCACCAATCGATGTGAGATCCCCCAATCCACCCCCTTCAGGGCCTAGCACCCTTGTTGGCACACCGCCTCGTGTCCACCTTCCTACGGGGCTCAGCCTCCTCTATGACACATCTCCCAAATCCTGTTTCTGATATTATTTGTAACCGCACAAAACCCCCATCGCTAATAGATATTGTCCTCTTTGGGCTTTTCTTTCCGGGCTTCCTCTCAAGGTTTTTAAAATGCGTTTGCTAGGGAGAGGTTTTCACACCCTTATAAAGAATGTTTCATTCTCCCCAACCGATGTGAGACCTCACAATTCACCCCCCTCGGGGCCCAGCGTCCTTGCTGGCACTCGTTCCCTTCCCCAATCGATGTGGGATCCCCCAATCCACCCCCCTTCAGGGCCTAACATCCTTGCTGGCACACCGCCTCGTGTCCACCTTCCTTCGGGGTTCAGCCTCCTCTATGACACATAGTCTAAATCCTGGTTCTGATACTATTTGTAACGGTCCAAGCCCACCGCTAACAGATATTGTCCTCTTTGGGCTTTCCCTTCCAAACTTCCTTTTGAGGTTTTTAAAACGCGTTTGCTATGGGGAGGTTTTCACACCCTTATAAGGAACGTTTCGTTCTCCTCCCCAACCGATCTGGCATCTCACAATGACTCACTAAAGTCTTCGTTAAAAAAAAGATCATATTGTTATAGAGAATTCTTGAAAAAGTTGATTTTGGTAATTTTTTATCTACCTGTAAAAGCTTTATTCAAATTTTCAAAGATGCTGTAAAATAGAGTCCTAGTGATGAAAGTTCAAGCTATTATTTACCAGTACTTATATGTTATGAACATTTATACTAAGAATTATACAAACATAGAATATTCTTGACCTTGGGGTTGCTGCGAATGGAGATGGTTTGTATAGGGTTATGAATATAAGGAGAAGTCATTTTTCGTGTTAAAAAACGTCCTATTGTGGGAGTATGAATCCTCGGTAGAGATCGTGTTATAAAAGACCCTGCTCTAAATATAAGGGATATATTTAGATTTATTATTTCCCAGTAGCTTAGATTTATTGTTAATTTAGGGATTTGTTAGCTTTTACTAAAATCTTCAGATCTGTGAAGGTTGAACTCCTATTCCTAGATGGAAGAATCGAACGGTACCTTAAGAAAGGCCGCTATGGAAAGCGCACTGTCGTAGATGCTCTAATCCACCTGGTTATCGTCCTCAAATACATTGCCATTATGGTTTTGGAATTGGTTAAGAATGCACCATGCAACACAAGAAAAATAGGATAAATCATAAGTATGTTCTAGCTATGAGGAATGATGAGGAGCTCAAAAAATTGCTTCAAGGAGTCACTATTGCAAGTGATAAAGTTCTTCCAAACATCAATCGGTTCTCCTAGAGAATTGGCACTAAGAGGCAAGCAACACTTGTGGAATTGTTCAAAGAGAAGCGAGCACGAGAGAGGCAAGCAATGTCCATGAAAGTGCTCAAAGAGGAGTGAGCACGAGAGAGATAAGTAATGCACTTGGAAGTGCTCCAAGATGAGTGAGCATGAGAGAGGCAAGCTACGACTGTGGAAGTGCTCCAAAGAGATAGTATGCATGAGTTATGTGCGCTCATGGTTTCAACTGATAGATATCCTAACAAAATAACTTCACGGCTTAAAGTTATGGAGTCCTTTTGTTAGCGCATCTATCAATTGAAACCATTAACTCATGCATATTATCTTCTTGGAGCACTTCCACGAGCATTACTTGCCTCTCTCGTGTTCACCCCTCTTTGAGCACTCTCATGGATGTTTCTTGCCTCTCTCGTGCTCACAACACTTACACGGGCATTGTTTGCCTCTCTCATGCTCACTCCTCCTGAGACACTTCCACTAGTGTTGTTTGTCTCTCTAGTGCTCATTTCTTAAGGAGAACCGATTGATGTGAGGACGTCAAATAGGTAGATTGGAGCATCTATGGTAGTGTGCTTTCCGTAGTGGCCTCTCTTAAGATACCATACAGGTTCTTCCATCTGGAATTAGTGGACGATATTTATTGGTCAAAAACTTGTCTCGAAGTAAAGTATGAGATTAGACTTAGACTTCTTGTTAGATGGTTTATTGCAATTCTTTGGATCGAAAATAATGTTTGAGGTAGTATTGAACGAATTTGGACAGCTATGCAATTACCGATGGCGAAGCAGTTTCCAGCAAATAGGAGCAGCCCGAGCTGAACCTCGATGTAGCTACCTCTCACTATAGGTGTCTTTCATAATATACTTGCTAGCTAAAATATGAGAACTTCTACCTGAGCCAATAGAATCACCAGCAGAACCATTTCCCGACAGTGGAAGCAAAATATGCAGCACCTCTAGATGGGGCGGTGCTGGGTTTGAAGAAAAGCATGCCATCCTTATCAGAAGGATGA

mRNA sequence

ATGATCCAGTGGTCAAAAGAAGCTAAAGGATCCAGTGGTCACTTGACAAGGTGCAAAAATATGGAAATGGAGGACGTAGACGAAGACAATAAAGTTGAGGTCATTCTACAAGGAATCCAACTCTGGTTGCTACTTTCAATGCCTCCATCATGTAAATCTGTGAAGGTTGAACTCCTATTCCTAGATGGAAGAATCGAACGGTACCTTAAGAAAGGCCGCTATGGAAAGCGCACTGTCGTAGATGCTCTAATCCACCTGGTTATCGTCCTCAAATACATTGCCATTATGAATCACCAGCAGAACCATTTCCCGACAGTGGAAGCAAAATATGCAGCACCTCTAGATGGGGCGGTGCTGGGTTTGAAGAAAAGCATGCCATCCTTATCAGAAGGATGA

Coding sequence (CDS)

ATGATCCAGTGGTCAAAAGAAGCTAAAGGATCCAGTGGTCACTTGACAAGGTGCAAAAATATGGAAATGGAGGACGTAGACGAAGACAATAAAGTTGAGGTCATTCTACAAGGAATCCAACTCTGGTTGCTACTTTCAATGCCTCCATCATGTAAATCTGTGAAGGTTGAACTCCTATTCCTAGATGGAAGAATCGAACGGTACCTTAAGAAAGGCCGCTATGGAAAGCGCACTGTCGTAGATGCTCTAATCCACCTGGTTATCGTCCTCAAATACATTGCCATTATGAATCACCAGCAGAACCATTTCCCGACAGTGGAAGCAAAATATGCAGCACCTCTAGATGGGGCGGTGCTGGGTTTGAAGAAAAGCATGCCATCCTTATCAGAAGGATGA

Protein sequence

MIQWSKEAKGSSGHLTRCKNMEMEDVDEDNKVEVILQGIQLWLLLSMPPSCKSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIAIMNHQQNHFPTVEAKYAAPLDGAVLGLKKSMPSLSEG
Homology
[Close]
BLAST of CmaCh01G016190 vs. ExPASy Swiss-Prot
Match: Q9LZ46 (Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-04
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 0 

Query: 49 PSCKSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIA 95
          P  +SVK  L F  GRI RYLKKGRY KR    A ++L  VL+Y+A
Sbjct: 24 PVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYLA 69

[Close]
BLAST of CmaCh01G016190 vs. ExPASy Swiss-Prot
Match: A2XZN0 (Probable histone H2A.6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_017523 PE=3 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 1.9e-04
Identity = 24/46 (52.17%), Postives = 30/46 (65.22%), Query Frame = 0 

Query: 49 PSCKSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIA 95
          P  +SVK  L F  GRI RYLKKGRY +R    A ++L  VL+Y+A
Sbjct: 25 PVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLA 70

[Close]
BLAST of CmaCh01G016190 vs. ExPASy Swiss-Prot
Match: Q75L11 (Probable histone H2A.6 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0113900 PE=2 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 1.9e-04
Identity = 24/46 (52.17%), Postives = 30/46 (65.22%), Query Frame = 0 

Query: 49 PSCKSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIA 95
          P  +SVK  L F  GRI RYLKKGRY +R    A ++L  VL+Y+A
Sbjct: 25 PVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLA 70

[Close]
BLAST of CmaCh01G016190 vs. ExPASy Swiss-Prot
Match: P25469 (Histone H2A.1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.6e-04
Identity = 24/43 (55.81%), Postives = 29/43 (67.44%), Query Frame = 0 

Query: 52 KSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIA 95
          KS+K  L F  GRI RYLKKGRY +R    A I+L  VL+Y+A
Sbjct: 24 KSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPIYLAAVLEYLA 66

[Close]
BLAST of CmaCh01G016190 vs. ExPASy Swiss-Prot
Match: P02276 (Histone H2A.2.1 OS=Triticum aestivum OX=4565 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 7.3e-04
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 0 

Query: 52 KSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIA 95
          KS+K  L F  GRI RYLKKGRY +R    A ++L  VL+Y+A
Sbjct: 24 KSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLA 66

[Close]
BLAST of CmaCh01G016190 vs. ExPASy TrEMBL
Match: A0A5N6QWC4 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_006618 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.9e-05
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 0 

Query: 52  KSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIAIMNHQQNHFPTVEAKYA 111
           KSVK  L F  GRI R+LKKGRY +RT   A ++L  VL+Y+A    + +H PT E ++ 
Sbjct: 24  KSVKAGLQFPVGRIARFLKKGRYAQRTGTGAPVYLAAVLEYLAAEGLKADHDPTEEGRFV 83

Query: 112 A---PLDGAVLGLKKSMP 127
           +   PL  AV G  K++P
Sbjct: 84  SVTYPLVRAVGG--KNIP 99

[Close]
BLAST of CmaCh01G016190 vs. NCBI nr
Match: KAG7028431.1 (putative histone H2A.5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.8 bits (138), Expect = 8.3e-05
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 53 SVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIAIM 97
          S K  L  LDGR  RYLKKGRY KRT VDALI+LV+V KY+A M
Sbjct: 5  SFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASM 48

[Close]
BLAST of CmaCh01G016190 vs. NCBI nr
Match: KAE8010232.1 (hypothetical protein FH972_006618 [Carpinus fangiana])

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-04
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 0 

Query: 52  KSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIAIMNHQQNHFPTVEAKYA 111
           KSVK  L F  GRI R+LKKGRY +RT   A ++L  VL+Y+A    + +H PT E ++ 
Sbjct: 24  KSVKAGLQFPVGRIARFLKKGRYAQRTGTGAPVYLAAVLEYLAAEGLKADHDPTEEGRFV 83

Query: 112 A---PLDGAVLGLKKSMP 127
           +   PL  AV G  K++P
Sbjct: 84  SVTYPLVRAVGG--KNIP 99

[Close]
BLAST of CmaCh01G016190 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 48.5 bits (114), Expect = 4.7e-06
Identity = 26/49 (53.06%), Postives = 31/49 (63.27%), Query Frame = 0 

Query: 49 PSCKSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIAIMN 98
          P  +SVK  L F  GRI RYLKKGRY KR    A ++L  VL+Y+A  N
Sbjct: 24 PVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYLAAEN 72

[Close]
BLAST of CmaCh01G016190 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 47.8 bits (112), Expect = 8.0e-06
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 0 

Query: 49 PSCKSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIA 95
          P  +SVK  L F  GRI RYLKKGRY KR    A ++L  VL+Y+A
Sbjct: 24 PVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYLA 69

[Close]
BLAST of CmaCh01G016190 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 43.9 bits (102), Expect = 1.2e-04
Identity = 24/43 (55.81%), Postives = 28/43 (65.12%), Query Frame = 0 

Query: 52 KSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIA 95
          KSVK  L F  GRI RYLKKGRY  R    A ++L  VL+Y+A
Sbjct: 28 KSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLA 70

[Close]
BLAST of CmaCh01G016190 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 41.6 bits (96), Expect = 5.7e-04
Identity = 21/43 (48.84%), Postives = 29/43 (67.44%), Query Frame = 0 

Query: 52 KSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIA 95
          KS+K  L F  GRI R+LKKGRY +R    A +++  VL+Y+A
Sbjct: 27 KSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYLA 69

The following BLAST results are available for this feature:
BLAST of CmaCh01G016190 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LZ461.1e-0454.35Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1[more]
A2XZN01.9e-0452.17Probable histone H2A.6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_017523 PE=3... [more]
Q75L111.9e-0452.17Probable histone H2A.6 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0113900 ... [more]
P254695.6e-0455.81Histone H2A.1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1[more]
P022767.3e-0453.49Histone H2A.2.1 OS=Triticum aestivum OX=4565 PE=1 SV=1[more]
BLAST of CmaCh01G016190 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5N6QWC46.9e-0544.87Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_006618 PE=3 SV=1[more]
BLAST of CmaCh01G016190 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7028431.18.3e-0568.18putative histone H2A.5, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAE8010232.11.4e-0444.87hypothetical protein FH972_006618 [Carpinus fangiana][more]
BLAST of CmaCh01G016190 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G02560.24.7e-0653.06histone H2A 12 [more]
AT5G02560.18.0e-0654.35histone H2A 12 [more]
AT5G27670.11.2e-0455.81histone H2A 7 [more]
AT5G59870.15.7e-0448.84histone H2A 6 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 51..98
e-value: 1.5E-5
score: 27.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G016190.1CmaCh01G016190.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046982 protein heterodimerization activity