CmaCh01G013420 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh01G013420
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr01: 9596081 .. 9597467 (+)
RNA-Seq ExpressionCmaCh01G013420
SyntenyCmaCh01G013420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGCGGGTTTATAGGTGGGGAATTTTCCTGCCCGATTCAACGACGGGCGGGGCAGGTAAAGGCGTCGGTTGCACGTGTGAGAGTACAGTTACACACGTGTGAGTCCACTTCCTTCTGATTGGCTGAAACAGTGACCCATTCTCAAATCCCAAGCATTTTTCTTCAACATTCCACTCTCACTCTTTCACTCATTCTCTCTTTCTCTCTCTCATCACTCAGAAACGGACAGGAATCTTTCAATTTCACAAGCTCACGGCGATTTTTGGTTTTTCTTAACGTCACATCCACCGATTCATCCACATTTTCTGATTCCTGGATCTTGGATCGGTTTGCAGGTTCGAATGTCTGTTCTTATTGCCATTTTTAGTTCTAATTTTACTCAAATTTGTTGTGCTACTTGGATTCGTATTGTGTATCTGCAATCATTCGTTGATTTTCAATTATCTGGCTGTTCTTTTTGTTTTTTGTTCTTTTTTTTTCTTTTACGAGTTATTAAATGTGTAATTTATGTGTTTTTAGTGTGATTCGTGAGATCATTTCACTTTGCTTTGACTATAAATGCTCGATTTGAAATTAAAATTAGTTTGAGCTGAAATTGTTGCTACTTCTGTTGCTTCAAATTCAAGTAGTTTCTGTTGAAAATTATAATATTACTACTGTTTTTATGCTGCTCGGCTCTTTGGAATATAACTATATGAATTGCATGAACTGAGGAATATTGATCGAGTGAAGTTCATTCCTCTGAAAAATCGAGTAATATGCTATAGCTTTTGCTTTAATGGTGACGGTTGTTGAATTTATCATGGACTTTTCTTTTATAAATATATATAGTTATCTCTTTACTTTTATGTTCTGGCTTCTTGTGGCATATCCACAGAGAATGGTAGAATGAAAAAGCTTCTGGCCCACCGGATTATTTGTGTGTGTTAAACTTTTGCTGAACTTGGAGGTTTATCGTTCTAAATCCCATCGGTTTAGTTTATTATGCCGCCGTATTTTTACGACCCCTCAGCAACATAATGTCAGATTAGATCATGGGCCAGCATTTTGTCAAATGTGTTAGGAAAATAATATGTACCAATTACTCTTTCTAGTCTGAATGGTCTTGGGGTCATATGATATATAGTATAGTATGCCATGGTTTGTGGGTCGGTGTGAACTGGAGTAATTTAAAACTGCTAGCAAAATCTGTGACGTTGAGAATTTTGTACAGAGTTATTGCATTTTTGTACCGTCATCTGCTAAGAGATTAGCATTTCCTGCCAAGAGTAAGCACCTTCTTCTATGCCAGGTGTTGTCTTCCTTGCGGCAGCTCTTTGTTACAGATTACATTATGTTCAAGAAAACCATTCCAGTCTTTGAGATCTCAGATGGTTTGTTGTAA

mRNA sequence

ATGTGGCGGGTTTATAGGTGGGGAATTTTCCTGCCCGATTCAACGACGGGCGGGGCAGAAACGGACAGGAATCTTTCAATTTCACAAGCTCACGGCGATTTTTGGTTTTTCTTAACGTCACATCCACCGATTCATCCACATTTTCTGATTCCTGGATCTTGGATCGGTTTGCAGGTGTTGTCTTCCTTGCGGCAGCTCTTTGTTACAGATTACATTATGTTCAAGAAAACCATTCCAGTCTTTGAGATCTCAGATGGTTTGTTGTAA

Coding sequence (CDS)

ATGTGGCGGGTTTATAGGTGGGGAATTTTCCTGCCCGATTCAACGACGGGCGGGGCAGAAACGGACAGGAATCTTTCAATTTCACAAGCTCACGGCGATTTTTGGTTTTTCTTAACGTCACATCCACCGATTCATCCACATTTTCTGATTCCTGGATCTTGGATCGGTTTGCAGGTGTTGTCTTCCTTGCGGCAGCTCTTTGTTACAGATTACATTATGTTCAAGAAAACCATTCCAGTCTTTGAGATCTCAGATGGTTTGTTGTAA

Protein sequence

MWRVYRWGIFLPDSTTGGAETDRNLSISQAHGDFWFFLTSHPPIHPHFLIPGSWIGLQVLSSLRQLFVTDYIMFKKTIPVFEISDGLL
Homology
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BLAST of CmaCh01G013420 vs. NCBI nr
Match: KAG6608009.1 (hypothetical protein SDJN03_01351, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.4 bits (220), Expect = 1.7e-14
Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 27 ISQAHGDFWFFLTSHPPIHPHFLIPGSWIGLQVLSSLRQLFVT 70
          +SQAHGDFWFFLTSHPPIHPHF  PGSWIGLQVL SLRQLFVT
Sbjct: 34 LSQAHGDFWFFLTSHPPIHPHFPFPGSWIGLQVLFSLRQLFVT 76

The following BLAST results are available for this feature:
BLAST of CmaCh01G013420 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh01G013420 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh01G013420 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6608009.11.7e-1490.70hypothetical protein SDJN03_01351, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh01G013420 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G013420.1CmaCh01G013420.1mRNA