CmaCh01G012270 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh01G012270
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	NAC domain-containing protein
Location	Cma_Chr01: 8863199 .. 8864071 (-)
RNA-Seq Expression	CmaCh01G012270
Synteny	CmaCh01G012270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCCCATTTTACCACTCTTTTTATTCCCCATTCTTCCACTTCCACACATTTTTCATCTGGGTTTTCGCCCTTCTCTTCTGGGTCTCCCTTCAATTCCTTCCCCCCTTCCAAATTCCCCACCTTTTTTCCATCCACCAATGGACGTTTCTTCATTTTCCCATTGCGACGACAGCCACCACCTGCCGCCCGGATTCCGCTTCCACCCCACCGACGAGGAGCTCATCACCTACTACCTCCTCAAGAAAGTTCTCGACAGCACCTTCACCGGTCGAGCCATCGCCGAAGTCGACCTCAACAAGTGCGAGCCATGGGAGCTTCCGGGTAAGCCCATATCTCACCCACTCGATTCTTCTCCTAACCACTAATTAATTCTTTACCCATTGCAGAGAAAGCTAAGATGGGAGAGAAGGAATGGTATTTCTTCAGCCTTCGAGACCGGAAGTATCCAACCGGTTTAAGAACGAACCGGGCCACGGAAGCCGGGTACTGGAAAGCCACCGGAAAAGACAGGGAAATTTACAGTGCGAAAACGTATTCATTGGTGGGGATGAAGAAGACATTGGTGTTTTATAGAGGAAGAGCTCCAAAAGGAGAAAAAAGCAACTGGGTTATGCATGAATACCGCCTCGAAGGCAATTTTGCTTACCATTATCTCTCTAGAACCTCCAAGGTACGAACTTTTTGTTAACCCAGAAACCCTAACAATGAACAGCTCTTCTTGTCTGATCTTTCCCTCTCGCCCTTGTTAATGATTTCCTGTTTTTAATGCTTTTTTGTGTAATGGGTATGCCGTCGTTTTTGTAATCATGGCTTCCTTGTACCAAAAATTTCATTTTTTTTTTTAATTCAAGTTAGGGTTTTTATATAGTTTAA

mRNA sequence

CCCCCATTTTACCACTCTTTTTATTCCCCATTCTTCCACTTCCACACATTTTTCATCTGGGTTTTCGCCCTTCTCTTCTGGGTCTCCCTTCAATTCCTTCCCCCCTTCCAAATTCCCCACCTTTTTTCCATCCACCAATGGACGTTTCTTCATTTTCCCATTGCGACGACAGCCACCACCTGCCGCCCGGATTCCGCTTCCACCCCACCGACGAGGAGCTCATCACCTACTACCTCCTCAAGAAAGTTCTCGACAGCACCTTCACCGGTCGAGCCATCGCCGAAGTCGACCTCAACAAGTGCGAGCCATGGGAGCTTCCGGAGAAAGCTAAGATGGGAGAGAAGGAATGGTATTTCTTCAGCCTTCGAGACCGGAAGTATCCAACCGGTTTAAGAACGAACCGGGCCACGGAAGCCGGGTACTGGAAAGCCACCGGAAAAGACAGGGAAATTTACAGTGCGAAAACGTATTCATTGGTGGGGATGAAGAAGACATTGGTGTTTTATAGAGGAAGAGCTCCAAAAGGAGAAAAAAGCAACTGGGTTATGCATGAATACCGCCTCGAAGGCAATTTTGCTTACCATTATCTCTCTAGAACCTCCAAGGGTTTTTATATAGTTTAA

Coding sequence (CDS)

ATGGACGTTTCTTCATTTTCCCATTGCGACGACAGCCACCACCTGCCGCCCGGATTCCGCTTCCACCCCACCGACGAGGAGCTCATCACCTACTACCTCCTCAAGAAAGTTCTCGACAGCACCTTCACCGGTCGAGCCATCGCCGAAGTCGACCTCAACAAGTGCGAGCCATGGGAGCTTCCGGAGAAAGCTAAGATGGGAGAGAAGGAATGGTATTTCTTCAGCCTTCGAGACCGGAAGTATCCAACCGGTTTAAGAACGAACCGGGCCACGGAAGCCGGGTACTGGAAAGCCACCGGAAAAGACAGGGAAATTTACAGTGCGAAAACGTATTCATTGGTGGGGATGAAGAAGACATTGGTGTTTTATAGAGGAAGAGCTCCAAAAGGAGAAAAAAGCAACTGGGTTATGCATGAATACCGCCTCGAAGGCAATTTTGCTTACCATTATCTCTCTAGAACCTCCAAGGGTTTTTATATAGTTTAA

Protein sequence

MDVSSFSHCDDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSKGFYIV

Homology

[Close]

BLAST of CmaCh01G012270 vs. ExPASy Swiss-Prot
Match: O04017 (Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana OX=3702 GN=NAC098 PE=1 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.3e-74
Identity = 126/156 (80.77%), Postives = 144/156 (92.31%), Query Frame = 0


Query: 6   FSHCDDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWELPEKAK 65
           + H  DS +LPPGFRFHPTDEELIT+YLL+KVLD  F+ RAIAEVDLNKCEPW+LP +AK
Sbjct: 8   YDHGGDSQYLPPGFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPWQLPGRAK 67

Query: 66  MGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTLVFYRG 125
           MGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREI+S+KT +LVGMKKTLVFY+G
Sbjct: 68  MGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVFYKG 127

Query: 126 RAPKGEKSNWVMHEYRLEGNFAYHYLSRTSKGFYIV 162
           RAPKGEKSNWVMHEYRLEG F+YH++SR+SK  +++
Sbjct: 128 RAPKGEKSNWVMHEYRLEGKFSYHFISRSSKDEWVI 163

[Close]

BLAST of CmaCh01G012270 vs. ExPASy Swiss-Prot
Match: Q9FRV4 (Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana OX=3702 GN=NAC054 PE=1 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 5.5e-70
Identity = 125/166 (75.30%), Postives = 143/166 (86.14%), Query Frame = 0


Query: 1   MDVSSFS-----HCDDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKC 60
           MDV  F+       +D   +PPGFRFHPTDEELITYYLLKKVLDS F+  AI++VDLNK 
Sbjct: 1   MDVDVFNGWGRPRFEDESLMPPGFRFHPTDEELITYYLLKKVLDSNFSCAAISQVDLNKS 60

Query: 61  EPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVG 120
           EPWELPEKAKMGEKEWYFF+LRDRKYPTGLRTNRATEAGYWKATGKDREI S+KT SL+G
Sbjct: 61  EPWELPEKAKMGEKEWYFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLG 120

Query: 121 MKKTLVFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSKGFYIV 162
           MKKTLVFY+GRAPKGEKS WVMHEYRL+G F+YHY+S ++K  +++
Sbjct: 121 MKKTLVFYKGRAPKGEKSCWVMHEYRLDGKFSYHYISSSAKDEWVL 166

[Close]

BLAST of CmaCh01G012270 vs. ExPASy Swiss-Prot
Match: Q9FLJ2 (NAC domain-containing protein 100 OS=Arabidopsis thaliana OX=3702 GN=NAC100 PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 5.4e-65
Identity = 116/156 (74.36%), Postives = 133/156 (85.26%), Query Frame = 0


Query: 6   FSHCDDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWELPEKAK 65
           F   ++   LPPGFRFHPTDEELIT+YL KKVLD++F+ +AI EVDLNK EPWELP  AK
Sbjct: 7   FQKEEEQMDLPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSEPWELPWMAK 66

Query: 66  MGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTLVFYRG 125
           MGEKEWYFF +RDRKYPTGLRTNRATEAGYWKATGKD+EIY  K  SLVGMKKTLVFYRG
Sbjct: 67  MGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGK--SLVGMKKTLVFYRG 126

Query: 126 RAPKGEKSNWVMHEYRLEGNFAYHYLSRTSKGFYIV 162
           RAPKG+K+NWVMHEYRLEG F+ H L +T+K  +++
Sbjct: 127 RAPKGQKTNWVMHEYRLEGKFSAHNLPKTAKNEWVI 160

[Close]

BLAST of CmaCh01G012270 vs. ExPASy Swiss-Prot
Match: Q9FLR3 (NAC domain-containing protein 79 OS=Arabidopsis thaliana OX=3702 GN=NAC079 PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.9e-63
Identity = 112/152 (73.68%), Postives = 130/152 (85.53%), Query Frame = 0


Query: 10  DDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWELPEKAKMGEK 69
           D+   LPPGFRFHPTDEELIT+YL KKVLD  F+ +AI EVDLNK EPWELP KAK+GEK
Sbjct: 12  DEQMDLPPGFRFHPTDEELITHYLHKKVLDLGFSAKAIGEVDLNKAEPWELPYKAKIGEK 71

Query: 70  EWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTLVFYRGRAPK 129
           EWYFF +RDRKYPTGLRTNRAT+AGYWKATGKD+EI+  K  SLVGMKKTLVFYRGRAPK
Sbjct: 72  EWYFFCVRDRKYPTGLRTNRATQAGYWKATGKDKEIFRGK--SLVGMKKTLVFYRGRAPK 131

Query: 130 GEKSNWVMHEYRLEGNFAYHYLSRTSKGFYIV 162
           G+K+NWVMHEYRL+G  + H L +T+K  +++
Sbjct: 132 GQKTNWVMHEYRLDGKLSAHNLPKTAKNEWVI 161

[Close]

BLAST of CmaCh01G012270 vs. ExPASy Swiss-Prot
Match: Q9LJW3 (NAC domain-containing protein 59 OS=Arabidopsis thaliana OX=3702 GN=NAC59 PE=1 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 8.0e-61
Identity = 110/147 (74.83%), Postives = 126/147 (85.71%), Query Frame = 0


Query: 15  LPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWELPEKAKMGEKEWYFF 74
           LPPGFRFHPTDEELIT+YL  KV++S F+  AI EVDLNK EPW+LP KAK+GEKEWYFF
Sbjct: 24  LPPGFRFHPTDEELITHYLRPKVVNSFFSAIAIGEVDLNKVEPWDLPWKAKLGEKEWYFF 83

Query: 75  SLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTLVFYRGRAPKGEKSN 134
            +RDRKYPTGLRTNRAT+AGYWKATGKD+EI+  K  SLVGMKKTLVFY+GRAPKG K+N
Sbjct: 84  CVRDRKYPTGLRTNRATKAGYWKATGKDKEIFKGK--SLVGMKKTLVFYKGRAPKGVKTN 143

Query: 135 WVMHEYRLEGNFAYHYLSRTSKGFYIV 162
           WVMHEYRLEG FA   LS+T+K   ++
Sbjct: 144 WVMHEYRLEGKFAIDNLSKTAKNECVI 168

[Close]

BLAST of CmaCh01G012270 vs. ExPASy TrEMBL
Match: A0A6J1J1J9 (protein CUP-SHAPED COTYLEDON 2-like OS=Cucurbita maxima OX=3661 GN=LOC111480435 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 5.5e-89
Identity = 156/161 (96.89%), Postives = 159/161 (98.76%), Query Frame = 0


Query: 1   MDVSSFSHCDDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWEL 60
           MDVSSFSHCDDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWEL
Sbjct: 1   MDVSSFSHCDDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWEL 60

Query: 61  PEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTL 120
           PEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTL
Sbjct: 61  PEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTL 120

Query: 121 VFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSKGFYIV 162
           VFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSK  +++
Sbjct: 121 VFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSKDEWVI 161

[Close]

BLAST of CmaCh01G012270 vs. ExPASy TrEMBL
Match: A0A6J1FSV0 (protein CUP-SHAPED COTYLEDON 2-like OS=Cucurbita moschata OX=3662 GN=LOC111446563 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.0e-87
Identity = 154/161 (95.65%), Postives = 157/161 (97.52%), Query Frame = 0


Query: 1   MDVSSFSHCDDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWEL 60
           MDVS FSH DDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWEL
Sbjct: 1   MDVSPFSHYDDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWEL 60

Query: 61  PEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTL 120
           PEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTL
Sbjct: 61  PEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTL 120

Query: 121 VFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSKGFYIV 162
           VFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSK  +++
Sbjct: 121 VFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSKDEWVI 161

[Close]

BLAST of CmaCh01G012270 vs. ExPASy TrEMBL
Match: A0A0A0L3C7 (NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G629480 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.7e-80
Identity = 146/167 (87.43%), Postives = 152/167 (91.02%), Query Frame = 0


Query: 1   MDVSSFSHCD------DSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNK 60
           MDVSSFSH D       +HHLPPGFRFHPTDEELITYYLLKKVLD+ FTGRAIAEVDLNK
Sbjct: 1   MDVSSFSHYDSAASDNSNHHLPPGFRFHPTDEELITYYLLKKVLDTNFTGRAIAEVDLNK 60

Query: 61  CEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLV 120
           CEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYS KT SLV
Sbjct: 61  CEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSVKTCSLV 120

Query: 121 GMKKTLVFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSKGFYIV 162
           GMKKTLVFYRGRAPKGEKSNWVMHEYRLEG FAYHYLS +SK  +++
Sbjct: 121 GMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSGSSKDEWVI 167

[Close]

BLAST of CmaCh01G012270 vs. ExPASy TrEMBL
Match: A0A5D3DXA0 (Protein CUP-SHAPED COTYLEDON 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001590 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.0e-79
Identity = 145/166 (87.35%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 1   MDVSSFSHCDD-----SHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKC 60
           MDVSSFS+ D      +HHLPPGFRFHPTDEELITYYLLKKVLD+ FTGRAIAEVDLNKC
Sbjct: 1   MDVSSFSYYDSAADNTNHHLPPGFRFHPTDEELITYYLLKKVLDTNFTGRAIAEVDLNKC 60

Query: 61  EPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVG 120
           EPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYS KT SLVG
Sbjct: 61  EPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSVKTCSLVG 120

Query: 121 MKKTLVFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSKGFYIV 162
           MKKTLVFYRGRAPKGEKSNWVMHEYRLEG FAYHYLS +SK  +++
Sbjct: 121 MKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSGSSKDEWVI 166

[Close]

BLAST of CmaCh01G012270 vs. ExPASy TrEMBL
Match: A0A1S3CJV4 (protein CUP-SHAPED COTYLEDON 2-like OS=Cucumis melo OX=3656 GN=LOC103501784 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.0e-79
Identity = 145/166 (87.35%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 1   MDVSSFSHCDD-----SHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKC 60
           MDVSSFS+ D      +HHLPPGFRFHPTDEELITYYLLKKVLD+ FTGRAIAEVDLNKC
Sbjct: 1   MDVSSFSYYDSAADNTNHHLPPGFRFHPTDEELITYYLLKKVLDTNFTGRAIAEVDLNKC 60

Query: 61  EPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVG 120
           EPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYS KT SLVG
Sbjct: 61  EPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSVKTCSLVG 120

Query: 121 MKKTLVFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSKGFYIV 162
           MKKTLVFYRGRAPKGEKSNWVMHEYRLEG FAYHYLS +SK  +++
Sbjct: 121 MKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSGSSKDEWVI 166

[Close]

BLAST of CmaCh01G012270 vs. NCBI nr
Match: XP_022981238.1 (protein CUP-SHAPED COTYLEDON 2-like [Cucurbita maxima])

HSP 1 Score: 336.7 bits (862), Expect = 1.1e-88
Identity = 156/161 (96.89%), Postives = 159/161 (98.76%), Query Frame = 0


Query: 1   MDVSSFSHCDDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWEL 60
           MDVSSFSHCDDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWEL
Sbjct: 1   MDVSSFSHCDDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWEL 60

Query: 61  PEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTL 120
           PEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTL
Sbjct: 61  PEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTL 120

Query: 121 VFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSKGFYIV 162
           VFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSK  +++
Sbjct: 121 VFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSKDEWVI 161

[Close]

BLAST of CmaCh01G012270 vs. NCBI nr
Match: XP_022941185.1 (protein CUP-SHAPED COTYLEDON 2-like [Cucurbita moschata])

HSP 1 Score: 330.5 bits (846), Expect = 8.2e-87
Identity = 154/161 (95.65%), Postives = 157/161 (97.52%), Query Frame = 0


Query: 1   MDVSSFSHCDDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWEL 60
           MDVS FSH DDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWEL
Sbjct: 1   MDVSPFSHYDDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWEL 60

Query: 61  PEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTL 120
           PEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTL
Sbjct: 61  PEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTL 120

Query: 121 VFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSKGFYIV 162
           VFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSK  +++
Sbjct: 121 VFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSKDEWVI 161

[Close]

BLAST of CmaCh01G012270 vs. NCBI nr
Match: KAG6607895.1 (Protein CUP-SHAPED COTYLEDON 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 330.5 bits (846), Expect = 8.2e-87
Identity = 154/161 (95.65%), Postives = 157/161 (97.52%), Query Frame = 0


Query: 1   MDVSSFSHCDDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWEL 60
           MDVS FSH DDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWEL
Sbjct: 1   MDVSPFSHYDDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWEL 60

Query: 61  PEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTL 120
           PEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTL
Sbjct: 61  PEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTL 120

Query: 121 VFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSKGFYIV 162
           VFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSK  +++
Sbjct: 121 VFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSKDEWVI 161

[Close]

BLAST of CmaCh01G012270 vs. NCBI nr
Match: XP_023525775.1 (protein CUP-SHAPED COTYLEDON 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.5 bits (846), Expect = 8.2e-87
Identity = 154/161 (95.65%), Postives = 157/161 (97.52%), Query Frame = 0


Query: 1   MDVSSFSHCDDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWEL 60
           MDVS FSH DDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWEL
Sbjct: 1   MDVSPFSHYDDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWEL 60

Query: 61  PEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTL 120
           PEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTL
Sbjct: 61  PEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTL 120

Query: 121 VFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSKGFYIV 162
           VFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSK  +++
Sbjct: 121 VFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSKDEWVI 161

[Close]

BLAST of CmaCh01G012270 vs. NCBI nr
Match: KAG7037422.1 (Protein CUP-SHAPED COTYLEDON 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 327.8 bits (839), Expect = 5.3e-86
Identity = 153/161 (95.03%), Postives = 157/161 (97.52%), Query Frame = 0


Query: 1   MDVSSFSHCDDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWEL 60
           MDVS FSH DDSH+LPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWEL
Sbjct: 1   MDVSPFSHYDDSHNLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWEL 60

Query: 61  PEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTL 120
           PEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTL
Sbjct: 61  PEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTL 120

Query: 121 VFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSKGFYIV 162
           VFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSK  +++
Sbjct: 121 VFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSKDEWVI 161

[Close]

BLAST of CmaCh01G012270 vs. TAIR 10
Match: AT5G53950.1 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein )

HSP 1 Score: 280.4 bits (716), Expect = 9.0e-76
Identity = 126/156 (80.77%), Postives = 144/156 (92.31%), Query Frame = 0


Query: 6   FSHCDDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWELPEKAK 65
           + H  DS +LPPGFRFHPTDEELIT+YLL+KVLD  F+ RAIAEVDLNKCEPW+LP +AK
Sbjct: 8   YDHGGDSQYLPPGFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPWQLPGRAK 67

Query: 66  MGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTLVFYRG 125
           MGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREI+S+KT +LVGMKKTLVFY+G
Sbjct: 68  MGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVFYKG 127

Query: 126 RAPKGEKSNWVMHEYRLEGNFAYHYLSRTSKGFYIV 162
           RAPKGEKSNWVMHEYRLEG F+YH++SR+SK  +++
Sbjct: 128 RAPKGEKSNWVMHEYRLEGKFSYHFISRSSKDEWVI 163

[Close]

BLAST of CmaCh01G012270 vs. TAIR 10
Match: AT3G15170.1 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein )

HSP 1 Score: 265.0 bits (676), Expect = 3.9e-71
Identity = 125/166 (75.30%), Postives = 143/166 (86.14%), Query Frame = 0


Query: 1   MDVSSFS-----HCDDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKC 60
           MDV  F+       +D   +PPGFRFHPTDEELITYYLLKKVLDS F+  AI++VDLNK 
Sbjct: 1   MDVDVFNGWGRPRFEDESLMPPGFRFHPTDEELITYYLLKKVLDSNFSCAAISQVDLNKS 60

Query: 61  EPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVG 120
           EPWELPEKAKMGEKEWYFF+LRDRKYPTGLRTNRATEAGYWKATGKDREI S+KT SL+G
Sbjct: 61  EPWELPEKAKMGEKEWYFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLG 120

Query: 121 MKKTLVFYRGRAPKGEKSNWVMHEYRLEGNFAYHYLSRTSKGFYIV 162
           MKKTLVFY+GRAPKGEKS WVMHEYRL+G F+YHY+S ++K  +++
Sbjct: 121 MKKTLVFYKGRAPKGEKSCWVMHEYRLDGKFSYHYISSSAKDEWVL 166

[Close]

BLAST of CmaCh01G012270 vs. TAIR 10
Match: AT5G61430.1 (NAC domain containing protein 100 )

HSP 1 Score: 248.4 bits (633), Expect = 3.8e-66
Identity = 116/156 (74.36%), Postives = 133/156 (85.26%), Query Frame = 0


Query: 6   FSHCDDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWELPEKAK 65
           F   ++   LPPGFRFHPTDEELIT+YL KKVLD++F+ +AI EVDLNK EPWELP  AK
Sbjct: 7   FQKEEEQMDLPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSEPWELPWMAK 66

Query: 66  MGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTLVFYRG 125
           MGEKEWYFF +RDRKYPTGLRTNRATEAGYWKATGKD+EIY  K  SLVGMKKTLVFYRG
Sbjct: 67  MGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGK--SLVGMKKTLVFYRG 126

Query: 126 RAPKGEKSNWVMHEYRLEGNFAYHYLSRTSKGFYIV 162
           RAPKG+K+NWVMHEYRLEG F+ H L +T+K  +++
Sbjct: 127 RAPKGQKTNWVMHEYRLEGKFSAHNLPKTAKNEWVI 160

[Close]

BLAST of CmaCh01G012270 vs. TAIR 10
Match: AT5G07680.1 (NAC domain containing protein 80 )

HSP 1 Score: 242.7 bits (618), Expect = 2.1e-64
Identity = 112/152 (73.68%), Postives = 130/152 (85.53%), Query Frame = 0


Query: 10  DDSHHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWELPEKAKMGEK 69
           D+   LPPGFRFHPTDEELIT+YL KKVLD  F+ +AI EVDLNK EPWELP KAK+GEK
Sbjct: 12  DEQMDLPPGFRFHPTDEELITHYLHKKVLDLGFSAKAIGEVDLNKAEPWELPYKAKIGEK 71

Query: 70  EWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTLVFYRGRAPK 129
           EWYFF +RDRKYPTGLRTNRAT+AGYWKATGKD+EI+  K  SLVGMKKTLVFYRGRAPK
Sbjct: 72  EWYFFCVRDRKYPTGLRTNRATQAGYWKATGKDKEIFRGK--SLVGMKKTLVFYRGRAPK 131

Query: 130 GEKSNWVMHEYRLEGNFAYHYLSRTSKGFYIV 162
           G+K+NWVMHEYRL+G  + H L +T+K  +++
Sbjct: 132 GQKTNWVMHEYRLDGKLSAHNLPKTAKNEWVI 161

[Close]

BLAST of CmaCh01G012270 vs. TAIR 10
Match: AT5G07680.2 (NAC domain containing protein 80 )

HSP 1 Score: 241.5 bits (615), Expect = 4.6e-64
Identity = 111/147 (75.51%), Postives = 128/147 (87.07%), Query Frame = 0


Query: 15  LPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWELPEKAKMGEKEWYFF 74
           LPPGFRFHPTDEELIT+YL KKVLD  F+ +AI EVDLNK EPWELP KAK+GEKEWYFF
Sbjct: 3   LPPGFRFHPTDEELITHYLHKKVLDLGFSAKAIGEVDLNKAEPWELPYKAKIGEKEWYFF 62

Query: 75  SLRDRKYPTGLRTNRATEAGYWKATGKDREIYSAKTYSLVGMKKTLVFYRGRAPKGEKSN 134
            +RDRKYPTGLRTNRAT+AGYWKATGKD+EI+  K  SLVGMKKTLVFYRGRAPKG+K+N
Sbjct: 63  CVRDRKYPTGLRTNRATQAGYWKATGKDKEIFRGK--SLVGMKKTLVFYRGRAPKGQKTN 122

Query: 135 WVMHEYRLEGNFAYHYLSRTSKGFYIV 162
           WVMHEYRL+G  + H L +T+K  +++
Sbjct: 123 WVMHEYRLDGKLSAHNLPKTAKNEWVI 147

The following BLAST results are available for this feature:

BLAST of CmaCh01G012270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04017	1.3e-74	80.77	Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana OX=3702 GN=NAC098 PE=1 SV...	[more]
Q9FRV4	5.5e-70	75.30	Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana OX=3702 GN=NAC054 PE=1 SV...	[more]
Q9FLJ2	5.4e-65	74.36	NAC domain-containing protein 100 OS=Arabidopsis thaliana OX=3702 GN=NAC100 PE=2...	[more]
Q9FLR3	2.9e-63	73.68	NAC domain-containing protein 79 OS=Arabidopsis thaliana OX=3702 GN=NAC079 PE=2 ...	[more]
Q9LJW3	8.0e-61	74.83	NAC domain-containing protein 59 OS=Arabidopsis thaliana OX=3702 GN=NAC59 PE=1 S...	[more]

BLAST of CmaCh01G012270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J1J9	5.5e-89	96.89	protein CUP-SHAPED COTYLEDON 2-like OS=Cucurbita maxima OX=3661 GN=LOC111480435 ...	[more]
A0A6J1FSV0	4.0e-87	95.65	protein CUP-SHAPED COTYLEDON 2-like OS=Cucurbita moschata OX=3662 GN=LOC11144656...	[more]
A0A0A0L3C7	2.7e-80	87.43	NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G629480 PE=4 SV...	[more]
A0A5D3DXA0	1.0e-79	87.35	Protein CUP-SHAPED COTYLEDON 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3CJV4	1.0e-79	87.35	protein CUP-SHAPED COTYLEDON 2-like OS=Cucumis melo OX=3656 GN=LOC103501784 PE=4...	[more]

BLAST of CmaCh01G012270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022981238.1	1.1e-88	96.89	protein CUP-SHAPED COTYLEDON 2-like [Cucurbita maxima]	[more]
XP_022941185.1	8.2e-87	95.65	protein CUP-SHAPED COTYLEDON 2-like [Cucurbita moschata]	[more]
KAG6607895.1	8.2e-87	95.65	Protein CUP-SHAPED COTYLEDON 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023525775.1	8.2e-87	95.65	protein CUP-SHAPED COTYLEDON 2-like [Cucurbita pepo subsp. pepo]	[more]
KAG7037422.1	5.3e-86	95.03	Protein CUP-SHAPED COTYLEDON 2, partial [Cucurbita argyrosperma subsp. argyrospe...	[more]

BLAST of CmaCh01G012270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53950.1	9.0e-76	80.77	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	[more]
AT3G15170.1	3.9e-71	75.30	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	[more]
AT5G61430.1	3.8e-66	74.36	NAC domain containing protein 100	[more]
AT5G07680.1	2.1e-64	73.68	NAC domain containing protein 80	[more]
AT5G07680.2	4.6e-64	75.51	NAC domain containing protein 80	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003441	NAC domain	PFAM	PF02365	NAM	coord: 16..142 e-value: 1.3E-41 score: 142.5
IPR003441	NAC domain	PROSITE	PS51005	NAC	coord: 15..161 score: 56.649921
IPR036093	NAC domain superfamily	GENE3D	2.170.150.80	NAC domain	coord: 24..157 e-value: 2.1E-54 score: 185.5
IPR036093	NAC domain superfamily	SUPERFAMILY	101941	NAC domain	coord: 8..151
None	No IPR available	PANTHER	PTHR31744:SF131	PROTEIN CUP-SHAPED COTYLEDON 2-LIKE	coord: 9..160
None	No IPR available	PANTHER	PTHR31744	PROTEIN CUP-SHAPED COTYLEDON 2-RELATED	coord: 9..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G012270.1	CmaCh01G012270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding