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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCTTCCAAATGAAGGTGTGAGGAATGAAGCAGCTGCGAGGGGTCCATTAAACGTGGACGATGGTCTTCAACGTAAGCAAAGCACAAGATACCCCAAATTCATTCATGATGCTTCCAAGGCAAAACGCGGAGTCGGCCATGGCGATGGCAACATCAAATTTATGGTTGCAGAAACGGGGAAGCAAAGAGCTGTTGGCCCTCAAACCCCATCACATCCACATCGCATTCAATCCCCTCCTTAATTATTGGACTTCAACAGTGTTCTACAGTATTCCCTTTTCTCTATTCTTTTCAACACGTCCAATTCACAAAAGTTCCCATTTGAACTTTGTAAGAAACAAGGGATTCCTTCAACATTTTACTGCTTCCTCGATTCGCGGAGTTGTGGGAAGTGAAAAGCAAAAGAAACCAAAGAAACAATCATAATCACATTGATGAGATTTCTCCTGGGGAATCAATGTGATTATCACTGGCTTTGTTCTTAGGATGATGCTTCATTTTCTGATGGGGAATTAATACTACTAGGAAGCTGCGGCTTTGTCAACCCCAAGAAGTTTGTGCACATGGGGTTGCTATTTGTCTATTAATAAACCTCCTAACCCCATGGCTGTACATTTATATATTGTTTATTTTTGGAATCAGCTGCCACTTTGATTTGGATTCGTATCTTTCGCATCTGTTCTGCTAGAGGTATAGTAAAAAGCAGCTGAGTGGGACTTTTGAGAGGCGATTTCTTGATATTTTTTAGGAATGTCAGTGGGATTTGAAGGGGATCTCAGGCAAAGTTGAGTACATCGGATCGAGTTAAAAGCATTTACCGATGGGTTCTTCTTGTTCCCTCAAAACATGATAGTTTGTTCTTTCCGGAGTTTTCTTCTGTTGGATCGATTTCAGGATCAAAGAAGCTGTTTTGTTTGTCAAACTGAAGTGCCAGGAAGATACTGGCGAAGTCTGCTGA mRNA sequence ATGCTTCCAAATGAAGGTGTGAGGAATGAAGCAGCTGCGAGGGGTCCATTAAACGTGGACGATGGTCTTCAACGTAAGCAAAGCACAAGATACCCCAAATTCATTCATGATGCTTCCAAGGCAAAACGCGGAGTCGGCCATGGCGATGGCAACATCAAATTTATGGTTGCAGAAACGGGGAAGCAAAGAGCTGATGATGCTTCATTTTCTGATGGGGAATTAATACTACTAGGAAGCTGCGGCTTTGTCAACCCCAAGAAGATCAAAGAAGCTGTTTTGTTTGTCAAACTGAAGTGCCAGGAAGATACTGGCGAAGTCTGCTGA Coding sequence (CDS) ATGCTTCCAAATGAAGGTGTGAGGAATGAAGCAGCTGCGAGGGGTCCATTAAACGTGGACGATGGTCTTCAACGTAAGCAAAGCACAAGATACCCCAAATTCATTCATGATGCTTCCAAGGCAAAACGCGGAGTCGGCCATGGCGATGGCAACATCAAATTTATGGTTGCAGAAACGGGGAAGCAAAGAGCTGATGATGCTTCATTTTCTGATGGGGAATTAATACTACTAGGAAGCTGCGGCTTTGTCAACCCCAAGAAGATCAAAGAAGCTGTTTTGTTTGTCAAACTGAAGTGCCAGGAAGATACTGGCGAAGTCTGCTGA Protein sequence MLPNEGVRNEAAARGPLNVDDGLQRKQSTRYPKFIHDASKAKRGVGHGDGNIKFMVAETGKQRADDASFSDGELILLGSCGFVNPKKIKEAVLFVKLKCQEDTGEVC
Homology
BLAST of CmaCh01G012030 vs. NCBI nr
Match: KAG7037401.1 (hypothetical protein SDJN02_01027, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 174.5 bits (441), Expect = 5.0e-40 Identity = 84/87 (96.55%), Postives = 84/87 (96.55%), Query Frame = 0
Query: 1 MLPNEGVRNEAAARGPLNVDDGLQRKQSTRYPKFIHDASKAKRGVGHGDGNIKFMVAETG 60
MLPNE VRNEAAARGPLNVDDGLQ KQSTRYPKFIHDASKAKRGVGHGDGNIKFMVAETG
Sbjct: 1 MLPNESVRNEAAARGPLNVDDGLQSKQSTRYPKFIHDASKAKRGVGHGDGNIKFMVAETG 60
Query: 61 KQRADDASFSDGELILLGSCGFVNPKK 88
KQRADDASFSDGEL LLGSCGFVNPKK
Sbjct: 61 KQRADDASFSDGELTLLGSCGFVNPKK 87
BLAST of CmaCh01G012030 vs. NCBI nr
Match: KAG6607871.1 (hypothetical protein SDJN03_01213, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 129.0 bits (323), Expect = 2.4e-26 Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 0
Query: 1 MLPNEGVRNEAAARGPLNVDDGLQRKQSTRYPKFIHDASKAKRGVGHGDGNIKFMVAETG 60
MLPNE VRNEAAARGPLNVDDGLQ KQSTRYPKFIHDASKAKRGVGHGDGNIKFMVAETG
Sbjct: 1 MLPNESVRNEAAARGPLNVDDGLQSKQSTRYPKFIHDASKAKRGVGHGDGNIKFMVAETG 60
Query: 61 KQRA 65
KQRA
Sbjct: 61 KQRA 64
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG7037401.1 | 5.0e-40 | 96.55 | hypothetical protein SDJN02_01027, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6607871.1 | 2.4e-26 | 96.88 | hypothetical protein SDJN03_01213, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..25 |
Relationships
The following mRNA feature(s) are a part of this gene:
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