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CmaCh00G003620 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGATACTCCGTAAGCCATTCCATCCAAAGCTTCTGCAACGTTTTCCAAAATTCGAGCTCGTTGGATTCGTTACTGAGCTCGGCTGATTATCCGTGGTGAAACCCAGATAACAGAAGAGTTTCGGCTTTACGATTCGAAGCTCTCCCTCTTTTCTCAAAATACGAAGGTACCTCATGATCACTCTGACTTCCCATTTATCCATTACCCTCTCTGTTCTTCCATTTTGTTTGTTTGAGATGTCAATTCTTATTGGATATCATCCTGTGTGTGGATTTTCCAGAATGTTGCTTCATTGTTTGATGCAGTGTCGTAATAGAATTTCATTAGTTCTTAGAGATTGCCCTAGATATTGATGGCTATTGAGTGTAGTAATAATCTGAGCTTGTTCCTTGGCAGAAACTGAGTGCATTGCTTCATAGTTGCATGTGCGAGGTGTTCTTTGGGAATGGGAATGTGTGATAGTAAGATAGTGATGGCCCAATGGGGTGATTAGTTCCAATTCCGTGATTAAGTTTTGTTATGAACATGAGATTGAAACTTTAAAGCTGTTATTTATTAGTAACCACGATATTTTTTCTCCAGAGTTCCATTCTTTATAAAATGAAGAGGCCAATGCCATGGAATGAACAGGTAGATGTTATCTCATCAGGTGAATCTTCTTCCTCTGATTCAGAAATAGGAGGACAAAATGATGGATTTGAGTTCAAGCCCTCCATTGATGACTTCAAAATTCCTGCAAAGGAGATGACATCTGAAGGTAATTTGATCTTTGTCTTTGTTACACCAACAGTTTGAAGTACTTCGTGAGATAAATTTAGAGTTTCTATATATAAATTTTCACATCCATAAGCTTTGGAAAAGAGGATCTTCTGTGAAATGTCATCTAATGATATGCAGACATGTTGATTAAAAGGGCAGAAATGTATCAAGAATACATGAAACAGATCCCGATCCCGGCATACCGTGGATCTGTTATACCATTTACAACATGGATGGGACTAGGCAAATCTATAAAGCAGCTATATGGACAGCCTTTGCATTACCTGACTAACATTCAACTCAAACAGTGGGATCAATTAAGGTTCGGAAGTGTGGATGAATATAAGCCATTGGATACCATAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATCGGCGCACCTCGTCACATCATCATGTTGCTAAGCTCTGGTTATCGGACTCAATGCACGAAGTGTATGTTGACTCCATTTTCCCCCAACTATGAAAGCTGCTGCTCTCAGTTAAGTTCTGATCTATGCTGATATTATAACATATTTCTAGAAGACTAACTTGCGTTGACTATGTGAATTGTAATAGAAACAACATAGTTCTTTAGTCACACTGCTCTTGAATGTGCAGGTTTCTTATCAACTGACATAGAACATGCTCTAGCATTGCCTCTTCTGTCCATTGTTGTGTCTGTCTGTGAAGTAGTTGATTGCATTTACTTTTGTAGCTTACAGATAGAAAAGCACTCTTAAGTTTCACAGAGATCGAATGTAAATCAATAGTGAAGATGCATATTTTCTTTTACAATTCTTTCCTATCTGAGAATTCTGTTACCAATAATCACCACATGAACACAACCCTTGTCGAAAGAAGTGAAACCTATTATTATCTCGTATTGTTATTTCCCTATCATAAACTTTTGAAACGTATTTGGCAAATGCATGACAGTCTGAGCACGTTCGGAGATTCTTGATGACACGAATAGGCAGGTGCTTTTTTGTACTTATAAGCCCGTAAGCCATCGCCAGCTTCTCGCTATGCTGATTGAGTAGATAATGTTTCTCCTGTTCATTTACATCAAGCAGAACATTGGTTAAATCAGGAACATAGCCAGCATCCCCAAGCCTGTTGGTGATTTCTTTCAACATCATGTCAATGTGACAAGTTTCTGGGTGTGATCTGTCGCCCGAGGTAAATTCATGAATAACTCCATCGACTTCGATTGAGCTTGAACCAGGCATTTTTCTAACTCCTTTCTCCTTCAAATGTAGCCTCACATTAGCAACATCAGCCCACTGTTCAGCCGACGCATATATGTTTGATAGAAGCACGTGAATCCCAGACCTTTCTGGAGCCGTTTCTGCCAACCTTTCAGCTGCAAATGTAGCCAGTTCGACGTTTTTATGAGTACGACATGCAGCCAATAGAGATCCCCAGATAATTCCATTGGGTTTCATTGACATGCTCTTTATAATGTCAAGAGCTTCTTCTAGCTTACCTGCACGGCCTAATAGATCGACCATGCAACCATAATGAACAATCTGTGGGGAGATTCCATGTTGCTTCATTGACTCGAATATGAGCTGCCCTTGTTCCACAAAACCACCATGGCTACAAGCTGTTAATATGTTTACAAAAACTACTTGATCAGGTTTCACCCCTTGTCTTAGCATCTCACTATAAAGTTCTATAGCTCTCTCTCCATTCCCATCCACAGCCATTGCTCCAATGGCTGCTGTCCATGCCGAGACGTCTTTTCTATCCATATTGTCGAACACTTTCATCGCACTACGAGAGTCACCACACCTAGCAAACATATCGACTAAGGCTGTCTCAAGCAACATATCACAGTCGATATTGTTCTTTATGATATATGCATATATCCATTTGGCGAGTTCGAGAGCTCCTAGATATCCACATGCAGATGCAACTTCTACCATCGTCACCCTGTCTGCTTCTATTTCCTTTGTTTGCATTTCTCGAAAGAGTTCAATTGCCTCCTCGAACATACTCTCTTGAACCAAAGCACTAACC TGATACTCCGTAAGCCATTCCATCCAAAGCTTCTGCAACGTTTTCCAAAATTCGAGCTCGTTGGATTCGTTACTGAGCTCGGCTGATTATCCGTGGTGAAACCCAGATAACAGAAGAGTTTCGGCTTTACGATTCGAAGCTCTCCCTCTTTTCTCAAAATACGAAGAGTTCCATTCTTTATAAAATGAAGAGGCCAATGCCATGGAATGAACAGGTAGATGTTATCTCATCAGGTGAATCTTCTTCCTCTGATTCAGAAATAGGAGGACAAAATGATGGATTTGAGTTCAAGCCCTCCATTGATGACTTCAAAATTCCTGCAAAGGAGATGACATCTGAAGACATGTTGATTAAAAGGGCAGAAATGTATCAAGAATACATGAAACAGATCCCGATCCCGGCATACCGTGGATCTGTTATACCATTTACAACATGGATGGGACTAGGCAAATCTATAAAGCAGCTATATGGACAGCCTTTGCATTACCTGACTAACATTCAACTCAAACAGTGGGATCAATTAAGGTTCGGAAGTGTGGATGAATATAAGCCATTGGATACCATAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATCGGCGCACCTCGTCACATCATCATGTTGCTAAGCTCTGGTTATCGGACTCAATGCACGAAGTGTATGTTGACTCCATTTTCCCCCAACTATGAAAGCTGCTGCTCTCATCTGAGCACGTTCGGAGATTCTTGATGACACGAATAGGCAGGTGCTTTTTTGTACTTATAAGCCCGTAAGCCATCGCCAGCTTCTCGCTATGCTGATTGAGTAGATAATGTTTCTCCTGTTCATTTACATCAAGCAGAACATTGGTTAAATCAGGAACATAGCCAGCATCCCCAAGCCTGTTGGTGATTTCTTTCAACATCATGTCAATGTGACAAGTTTCTGGGTGTGATCTGTCGCCCGAGCCTCACATTAGCAACATCAGCCCACTGTTCAGCCGACGCATATATGTTTGATAGAAGCACGTGAATCCCAGACCTTTCTGGAGCCGTTTCTGCCAACCTTTCAGCTGCAAATGTAGCCAGTTCGACGTTTTTATGAGTACGACATGCAGCCAATAGAGATCCCCAGATAATTCCATTGGGTTTCATTGACATGCTCTTTATAATGTCAAGAGCTTCTTCTAGCTTACCTGCACGGCCTAATAGATCGACCATGCAACCATAATGAACAATCTGTGGGGAGATTCCATGTTGCTTCATTGACTCGAATATGAGCTGCCCTTGTTCCACAAAACCACCATGGCTACAAGCTGTTAATATGTTTACAAAAACTACTTGATCAGGTTTCACCCCTTGTCTTAGCATCTCACTATAAAGTTCTATAGCTCTCTCTCCATTCCCATCCACAGCCATTGCTCCAATGGCTGCTGTCCATGCCGAGACGTCTTTTCTATCCATATTGTCGAACACTTTCATCGCACTACGAGAGTCACCACACCTAGCAAACATATCGACTAAGGCTGTCTCAAGCAACATATCACAGTCGATATTGTTCTTTATGATATATGCATATATCCATTTGGCGAGTTCGAGAGCTCCTAGATATCCACATGCAGATGCAACTTCTACCATCGTCACCCTGTCTGCTTCTATTTCCTTTGTTTGCATTTCTCGAAAGAGTTCAATTGCCTCCTCGAACATACTCTCTTGAACCAAAGCACTAACC ATGAAGAGGCCAATGCCATGGAATGAACAGGTAGATGTTATCTCATCAGGTGAATCTTCTTCCTCTGATTCAGAAATAGGAGGACAAAATGATGGATTTGAGTTCAAGCCCTCCATTGATGACTTCAAAATTCCTGCAAAGGAGATGACATCTGAAGACATGTTGATTAAAAGGGCAGAAATGTATCAAGAATACATGAAACAGATCCCGATCCCGGCATACCGTGGATCTGTTATACCATTTACAACATGGATGGGACTAGGCAAATCTATAAAGCAGCTATATGGACAGCCTTTGCATTACCTGACTAACATTCAACTCAAACAGTGGGATCAATTAAGGTTCGGAAGTGTGGATGAATATAAGCCATTGGATACCATAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATCGGCGCACCTCGTCACATCATCATGTTGCTAAGCTCTGGTTATCGGACTCAATGCACGAAGTGTATGTTGACTCCATTTTCCCCCAACTATGA MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEDMLIKRAEMYQEYMKQIPIPAYRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL Homology
BLAST of CmaCh00G003620 vs. ExPASy Swiss-Prot
Match: Q9LUJ3 (Protein RDM1 OS=Arabidopsis thaliana OX=3702 GN=RDM1 PE=1 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 2.3e-45 Identity = 87/158 (55.06%), Postives = 113/158 (71.52%), Query Frame = 0
BLAST of CmaCh00G003620 vs. ExPASy TrEMBL
Match: A0A6J1IGA1 (protein RDM1-like OS=Cucurbita maxima OX=3661 GN=LOC111473115 PE=4 SV=1) HSP 1 Score: 360.5 bits (924), Expect = 3.9e-96 Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
BLAST of CmaCh00G003620 vs. ExPASy TrEMBL
Match: A0A6J1GHM4 (protein RDM1-like OS=Cucurbita moschata OX=3662 GN=LOC111454021 PE=4 SV=1) HSP 1 Score: 350.5 bits (898), Expect = 4.0e-93 Identity = 170/174 (97.70%), Postives = 171/174 (98.28%), Query Frame = 0
BLAST of CmaCh00G003620 vs. ExPASy TrEMBL
Match: A0A6J1INZ9 (protein RDM1-like OS=Cucurbita maxima OX=3661 GN=LOC111479225 PE=4 SV=1) HSP 1 Score: 337.8 bits (865), Expect = 2.7e-89 Identity = 163/174 (93.68%), Postives = 166/174 (95.40%), Query Frame = 0
BLAST of CmaCh00G003620 vs. ExPASy TrEMBL
Match: A0A6J1GV10 (protein RDM1 OS=Cucurbita moschata OX=3662 GN=LOC111457683 PE=4 SV=1) HSP 1 Score: 337.4 bits (864), Expect = 3.5e-89 Identity = 163/174 (93.68%), Postives = 166/174 (95.40%), Query Frame = 0
BLAST of CmaCh00G003620 vs. ExPASy TrEMBL
Match: A0A1S3AWI8 (protein RDM1 OS=Cucumis melo OX=3656 GN=LOC103483688 PE=4 SV=1) HSP 1 Score: 330.5 bits (846), Expect = 4.3e-87 Identity = 159/174 (91.38%), Postives = 163/174 (93.68%), Query Frame = 0
BLAST of CmaCh00G003620 vs. NCBI nr
Match: XP_022974457.1 (protein RDM1-like [Cucurbita maxima] >XP_022974458.1 protein RDM1-like [Cucurbita maxima] >XP_022974459.1 protein RDM1-like [Cucurbita maxima] >XP_022975130.1 protein RDM1-like [Cucurbita maxima] >XP_022975131.1 protein RDM1-like [Cucurbita maxima] >XP_022975132.1 protein RDM1-like [Cucurbita maxima]) HSP 1 Score: 360.5 bits (924), Expect = 8.0e-96 Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
BLAST of CmaCh00G003620 vs. NCBI nr
Match: XP_023538686.1 (protein RDM1-like [Cucurbita pepo subsp. pepo] >XP_023538687.1 protein RDM1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 351.7 bits (901), Expect = 3.7e-93 Identity = 170/174 (97.70%), Postives = 172/174 (98.85%), Query Frame = 0
BLAST of CmaCh00G003620 vs. NCBI nr
Match: XP_022951070.1 (protein RDM1-like [Cucurbita moschata]) HSP 1 Score: 350.5 bits (898), Expect = 8.2e-93 Identity = 170/174 (97.70%), Postives = 171/174 (98.28%), Query Frame = 0
BLAST of CmaCh00G003620 vs. NCBI nr
Match: KAG7028891.1 (Protein RDM1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 350.5 bits (898), Expect = 8.2e-93 Identity = 170/174 (97.70%), Postives = 171/174 (98.28%), Query Frame = 0
BLAST of CmaCh00G003620 vs. NCBI nr
Match: KAG6597432.1 (Protein RDM1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 347.4 bits (890), Expect = 7.0e-92 Identity = 169/174 (97.13%), Postives = 170/174 (97.70%), Query Frame = 0
BLAST of CmaCh00G003620 vs. TAIR 10
Match: AT3G22680.1 (RNA-DIRECTED DNA METHYLATION 1 ) HSP 1 Score: 183.3 bits (464), Expect = 1.6e-46 Identity = 87/158 (55.06%), Postives = 113/158 (71.52%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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