CmaCh00G003410 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh00G003410
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionRING-H2 finger protein ATL67-like
LocationCma_Chr00: 27519535 .. 27520375 (-)
RNA-Seq ExpressionCmaCh00G003410
SyntenyCmaCh00G003410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCTTCCACATGGCTTCAACTGCTGCAACTCCATTACCATCTCCATCTCCAAATCCTCTTCAATGTCCTCTTCCACCGCTTCTTCCTCCAATTACTCCTTCGCCAAGCTTGGTTTCGGCTACGCCATTGCCATAGCACTCNTCCGCCCTCCTCCTCGCCTTCTACGTCTGCTGCCGCGCCTCCCGCTCCCGCAACCTCCGTCTCTCTTCTTCCAGGCCGCCTCCCTCGCGCTCCGATGCCGGTATCATTCTCCCGCAAATCATTTTTGTCGCCGAGGACGACGGCGCTCCAGATCGCGACGATGACAACGGCGTCGTTGGGCTCGATCAAGCTGTGATTAACTCTTACCCTAAATTCCCCTTCTCCAAGGACAAATCTATGGCCGGGGCTAATTGCGTTTGTTCTATTTGTCTATGTGAGTATAAGGAGGCGGAGATGCTGAGGATGATGCCCGAGTGTAGACATTACTTTCATCTCTGTTGCATCGACGCTTGGTTGAAGCTTAATGGCTCTTGCCCGGTTTGCCGGAATTCGCCACTCCCGACGCCGCTTTCCACTCCTCTGCAGGAGGTTGTGCCGCTCTCACAATACATGGCGGATCGGAGAAGGAGATGATCGGTCGCTCGATCGATTGATTGATATCGACAACACTCCAATAGGTTCTTCTATTACTTCTACTTTCTCTTAGTTCCATATTCTCTGTTTGTTTTACCTGTTTTTTCTCCTAGGAAATTGTAAATTCTTTGGTTAAGGTGCTGAGTTTTCTCCTATTTTTGAATGTTCTTGGAACTGTTCGACCTATACATGAATTTTTCAATTTACTTTTTGAGTAATTC

mRNA sequence

ATGTCCTCTTCCACATGGCTTCAACTGCTGCAACTCCATTACCATCTCCATCTCCAAATCCTCTTCAATCACTCNTCCGCCCTCCTCCTCGCCTTCTACGTCTGCTGCCGCGCCTCCCGCTCCCGCAACCTCCGTCTCTCTTCTTCCAGGCCGCCTCCCTCGCGCTCCGATGCCGGTATCATTCTCCCGCAAATCATTTTTGTCGCCGAGGACGACGGCGCTCCAGATCGCGACGATGACAACGGCGTCGTTGGGCTCGATCAAGCTGAGGCGGAGATGCTGAGGATGATGCCCGAGTGTAGACATTACTTTCATCTCTGTTGCATCGACGCTTGGTTGAAGCTTAATGGCTCTTGCCCGGTTTGCCGGAATTCGCCACTCCCGACGCCGCTTTCCACTCCTCTGCAGGAGGTTGTGCCGCTCTCACAATACATGGCGGATCGGAGAAGGAGATGATCGGTCGCTCGATCGATTGATTGATATCGACAACACTCCAATAGGTTCTTCTATTACTTCTACTTTCTCTTAGTTCCATATTCTCTGTTTGTTTTACCTGTTTTTTCTCCTAGGAAATTGTAAATTCTTTGGTTAAGGTGCTGAGTTTTCTCCTATTTTTGAATGTTCTTGGAACTGTTCGACCTATACATGAATTTTTCAATTTACTTTTTGAGTAATTC

Coding sequence (CDS)

ATGTCCTCTTCCACATGGCTTCAACTGCTGCAACTCCATTACCATCTCCATCTCCAAATCCTCTTCAATCACTCNTCCGCCCTCCTCCTCGCCTTCTACGTCTGCTGCCGCGCCTCCCGCTCCCGCAACCTCCGTCTCTCTTCTTCCAGGCCGCCTCCCTCGCGCTCCGATGCCGGTATCATTCTCCCGCAAATCATTTTTGTCGCCGAGGACGACGGCGCTCCAGATCGCGACGATGACAACGGCGTCGTTGGGCTCGATCAAGCTGAGGCGGAGATGCTGAGGATGATGCCCGAGTGTAGACATTACTTTCATCTCTGTTGCATCGACGCTTGGTTGAAGCTTAATGGCTCTTGCCCGGTTTGCCGGAATTCGCCACTCCCGACGCCGCTTTCCACTCCTCTGCAGGAGGTTGTGCCGCTCTCACAATACATGGCGGATCGGAGAAGGAGATGA

Protein sequence

MSSSTWLQLLQLHYHLHLQILFNHSSALLLAFYVCCRASRSRNLRLSSSRPPPSRSDAGIILPQIIFVAEDDGAPDRDDDNGVVGLDQAEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR
Homology
BLAST of CmaCh00G003410 vs. ExPASy Swiss-Prot
Match: O82353 (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.1e-35
Identity = 86/167 (51.50%), Postives = 98/167 (58.68%), Query Frame = 0

Query: 26  SALLLAFYVCCRASRSRNLRLSSSRPPPSRSDAGIILPQIIFVAEDDGAPDRDDDNGVVG 85
           S +LL+ Y+CCR SR R   + S+          +ILP+IIFVAE+D   D +  + VVG
Sbjct: 50  STVLLSSYICCRDSRRRTTAVEST----GDRGGSVILPRIIFVAEEDN-EDLEAGDVVVG 109

Query: 86  LDQA--------------------------------------EAEMLRMMPECRHYFHLC 145
           LDQA                                      EAEMLRMMPEC+HYFHLC
Sbjct: 110 LDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMMPECKHYFHLC 169

Query: 146 CIDAWLKLNGSCPVCRNSPLP----TPLSTPLQEVVPLSQYMADRRR 151
           C+DAWLKLNGSCPVCRNSPLP    TPLSTPL EVVPLSQY ADRRR
Sbjct: 170 CLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLSQYAADRRR 211

BLAST of CmaCh00G003410 vs. ExPASy Swiss-Prot
Match: Q9M313 (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-31
Identity = 89/194 (45.88%), Postives = 110/194 (56.70%), Query Frame = 0

Query: 5   TWLQLLQLHYHLHLQILF-NHSSALLLAFYVCCRASRSR-NLRLSSSRPPPSRSDAGIIL 64
           T++  L L Y + + + F    S ++L+ Y+CCRASR R +   +++    S SD G+I+
Sbjct: 19  TYITSLGLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIV 78

Query: 65  PQIIFVAEDDGAPDRDDDNGVV-GLDQA-------------------------------- 124
           P+IIFVAEDD   D +  N VV GLD +                                
Sbjct: 79  PRIIFVAEDD---DLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETT 138

Query: 125 ---------EAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLP----TPLSTPLQ 151
                    E EMLRMMPEC+HYFH+ C+DAWLKLNGSCPVCRNSPLP    TP STPL 
Sbjct: 139 CSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLS 198

BLAST of CmaCh00G003410 vs. ExPASy Swiss-Prot
Match: Q8RX29 (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.0e-17
Identity = 39/63 (61.90%), Postives = 46/63 (73.02%), Query Frame = 0

Query: 87  DQAEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMA 146
           D     +LR +P+C H FHL CID WL+LN +CPVCR SPLPTPLSTPL EVVPL+  +A
Sbjct: 153 DYKGKHLLRQLPDCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASSVA 212

Query: 147 DRR 150
             R
Sbjct: 213 ATR 215

BLAST of CmaCh00G003410 vs. ExPASy Swiss-Prot
Match: Q9FG21 (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.6e-13
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 0

Query: 87  DQAEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 144
           D  + +M+R++P+C H FH  C+D WL+L+ +CPVCR SPLP+P  TP+ +VVP S+
Sbjct: 135 DYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFSR 191

BLAST of CmaCh00G003410 vs. ExPASy Swiss-Prot
Match: Q9FL42 (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-12
Identity = 43/128 (33.59%), Postives = 68/128 (53.12%), Query Frame = 0

Query: 26  SALLLAFYVCCRASRSRNLRLSSS-----RPPPSRSDAGIILPQI-----IFVAEDDGAP 85
           S ++LA Y+C R+  +     +S        P +    G+  P I     I + +    P
Sbjct: 28  SFIMLASYICIRSKSTGRDEATSDVVLDLPSPAAEVKLGLDRPVIESYPRIVLGDSRRLP 87

Query: 86  DRDDDNGVVGLDQAEA-EMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTP 143
             ++    + L   EA E +R +PEC H FH  C+D WL+ + +CP+CRNSP P+ L+TP
Sbjct: 88  RPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDEWLRTSATCPLCRNSPAPSRLATP 147

BLAST of CmaCh00G003410 vs. TAIR 10
Match: AT2G46160.1 (RING/U-box superfamily protein )

HSP 1 Score: 149.1 bits (375), Expect = 2.9e-36
Identity = 86/167 (51.50%), Postives = 98/167 (58.68%), Query Frame = 0

Query: 26  SALLLAFYVCCRASRSRNLRLSSSRPPPSRSDAGIILPQIIFVAEDDGAPDRDDDNGVVG 85
           S +LL+ Y+CCR SR R   + S+          +ILP+IIFVAE+D   D +  + VVG
Sbjct: 50  STVLLSSYICCRDSRRRTTAVEST----GDRGGSVILPRIIFVAEEDN-EDLEAGDVVVG 109

Query: 86  LDQA--------------------------------------EAEMLRMMPECRHYFHLC 145
           LDQA                                      EAEMLRMMPEC+HYFHLC
Sbjct: 110 LDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMMPECKHYFHLC 169

Query: 146 CIDAWLKLNGSCPVCRNSPLP----TPLSTPLQEVVPLSQYMADRRR 151
           C+DAWLKLNGSCPVCRNSPLP    TPLSTPL EVVPLSQY ADRRR
Sbjct: 170 CLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLSQYAADRRR 211

BLAST of CmaCh00G003410 vs. TAIR 10
Match: AT3G61550.1 (RING/U-box superfamily protein )

HSP 1 Score: 137.5 bits (345), Expect = 8.9e-33
Identity = 89/194 (45.88%), Postives = 110/194 (56.70%), Query Frame = 0

Query: 5   TWLQLLQLHYHLHLQILF-NHSSALLLAFYVCCRASRSR-NLRLSSSRPPPSRSDAGIIL 64
           T++  L L Y + + + F    S ++L+ Y+CCRASR R +   +++    S SD G+I+
Sbjct: 19  TYITSLGLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIV 78

Query: 65  PQIIFVAEDDGAPDRDDDNGVV-GLDQA-------------------------------- 124
           P+IIFVAEDD   D +  N VV GLD +                                
Sbjct: 79  PRIIFVAEDD---DLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETT 138

Query: 125 ---------EAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLP----TPLSTPLQ 151
                    E EMLRMMPEC+HYFH+ C+DAWLKLNGSCPVCRNSPLP    TP STPL 
Sbjct: 139 CSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLS 198

BLAST of CmaCh00G003410 vs. TAIR 10
Match: AT2G35910.1 (RING/U-box superfamily protein )

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-18
Identity = 39/63 (61.90%), Postives = 46/63 (73.02%), Query Frame = 0

Query: 87  DQAEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMA 146
           D     +LR +P+C H FHL CID WL+LN +CPVCR SPLPTPLSTPL EVVPL+  +A
Sbjct: 153 DYKGKHLLRQLPDCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASSVA 212

Query: 147 DRR 150
             R
Sbjct: 213 ATR 215

BLAST of CmaCh00G003410 vs. TAIR 10
Match: AT5G06490.1 (RING/U-box superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-14
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 0

Query: 87  DQAEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 144
           D  + +M+R++P+C H FH  C+D WL+L+ +CPVCR SPLP+P  TP+ +VVP S+
Sbjct: 135 DYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFSR 191

BLAST of CmaCh00G003410 vs. TAIR 10
Match: AT5G07040.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-13
Identity = 43/128 (33.59%), Postives = 68/128 (53.12%), Query Frame = 0

Query: 26  SALLLAFYVCCRASRSRNLRLSSS-----RPPPSRSDAGIILPQI-----IFVAEDDGAP 85
           S ++LA Y+C R+  +     +S        P +    G+  P I     I + +    P
Sbjct: 28  SFIMLASYICIRSKSTGRDEATSDVVLDLPSPAAEVKLGLDRPVIESYPRIVLGDSRRLP 87

Query: 86  DRDDDNGVVGLDQAEA-EMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTP 143
             ++    + L   EA E +R +PEC H FH  C+D WL+ + +CP+CRNSP P+ L+TP
Sbjct: 88  RPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDEWLRTSATCPLCRNSPAPSRLATP 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
O823534.1e-3551.50RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1[more]
Q9M3131.2e-3145.88RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1[more]
Q8RX293.0e-1761.90RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1[more]
Q9FG212.6e-1350.88Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 P... [more]
Q9FL422.2e-1233.59Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P... [more]
Match NameE-valueIdentityDescription
AT2G46160.12.9e-3651.50RING/U-box superfamily protein [more]
AT3G61550.18.9e-3345.88RING/U-box superfamily protein [more]
AT2G35910.12.1e-1861.90RING/U-box superfamily protein [more]
AT5G06490.11.9e-1450.88RING/U-box superfamily protein [more]
AT5G07040.11.6e-1333.59RING/U-box superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024766Zinc finger, RING-H2-typePFAMPF12678zf-rbx1coord: 94..123
e-value: 2.5E-10
score: 40.5
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 46..127
e-value: 6.7E-13
score: 50.1
IPR044289RING-H2 finger protein ATL67/ATL68/ATL70PANTHERPTHR46592RING-H2 FINGER PROTEIN ATL67coord: 25..89
IPR044289RING-H2 finger protein ATL67/ATL68/ATL70PANTHERPTHR46592RING-H2 FINGER PROTEIN ATL67coord: 90..151
NoneNo IPR availablePANTHERPTHR46592:SF6RING-H2 FINGER PROTEIN ATL67coord: 25..89
NoneNo IPR availablePANTHERPTHR46592:SF6RING-H2 FINGER PROTEIN ATL67coord: 90..151
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 91..128
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 99..123
score: 8.71251

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G003410.1CmaCh00G003410.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016740 transferase activity
molecular_function GO:0008270 zinc ion binding