Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATTTTCGTTACTTTTCAAATTCCTTCAACTCTTCTTCTAAAACCCTAGTTTCTCTCTCTCTGCATCGAGTTGCTTGATTTTTCTTCTTCAGATCTTGGTCACTGCAATCGCCATCGATCAATCATGGCGGAACACTCTGACAACGTTGAGTCGAAATCGGAGTCATTGATCGACAAGATAGTCGAGAAGATTCATGATCATGATTCTTCTTCGTCGGGATCAGACTCTGAAACCGAGGGATCCTTGAAGGAGAAGGTCTTCCGCCTTTTTGGAAGGGAGAGGCCAGTTCATCATGTCTTCGGCGGTGGAAAACGTACGGAATCTTACCTCTCTGATTTGAACTCATTGAATAATTGTTTTGCTTTTTCTATTACATTTCCTAAGTTTTGCACTGCTTCTATTCGTTTTATTCGACCTTCGTCTTGATTGGTGTTTCTTAGGCTTCTTTTTGCTCTTTGGATTCGTTCTAGCATGTTTCCCTATTCTTTGCTTGGATTTAGAATATATAAACAATTAGAAATTGTAGATCTGCTTGCTTTACCTTACTGGGACTCATTGATAGTTCAGATCGAGCGTACGCTATAATTGAGTGATTCATTGAGCTTCCAGAGCAGAGTATTTATTATTTTCATTGATAGTTCAGATCGAGCGTACGGTATAATAGAGTGATTCATTGAGCTTCCAGAACAGAGTATTTATTATTTTCTTCCCCGAACTTGTTATATTTGTTCCTTGTCCCGGTTTCAATACTTCTACTTCATTTTTTTCTGCGTTGCACATTTCTGATTTCACATTTGAATATGCTCTGATGACGACACTTGTCTTGCTTATGTCGTATGGTAATTTATTTTTTGTTTGGCGATTGGTAATGTTGATGACCGTTTCTGGCCCCTGTTGCATATGCAGCTGCTGATTTATTCTTGTGGAGGAATAAGAAGATCTCAGCTGGTGTCCTTACTGGAGCCACTGTTATCTGGGTTTTCTTTGAACTGCTCGAGTGCCATCTGCTTACGTTTGTTTCTCGTTCTCTGATCCTCTCTCTTGGGCTCTTGTTTGTTTGGTCCAATGCCCACACATTTATCTACAAGTGAGTTACTGAATCTCAACTTCCTTTTATCAATAATTAAGTTTCTAGCGACTTCAAATTATGCTCGTCTTTCCACTGTTTAACAAATGTAGTTACAGGAGTCCACCCCGAATCCCAGAAGTTCAACTTCCTGCGGACCCCTTCCTGGAGCTTGCTTCAACTTTGAGGGCGGAAATCAATTGTGGTTTTGCATTATTGCGGGACATTGCGACTGGAAGAGATTTGAAGAAATTCATCACTGTACGTATCTGCTATTGATGCACTCTTTTTGTCTTTTTATTGTGTGTATTTTACTTGTTGGGTTTATCTCAACTCTCAAGTAGCAACCGAGCCTGAACAAGTTGCGCAACTTAATATATATACCTTGATTGGACTACAGATTCGACCATTATACTTAATATGCTAATTTGTAGTCTCAGAAATCGAAGTTAGAATAATTGAATTTTATCTAGATTATAGAAATGTTATGTCTCTATATCAGGCAATCGCTGGCTTGTGGGTTCTGTCAATCGTGGGAAGCTGGTGCAATTTCTTGACGTTGTTCTACATAAGTAACGACATCTCGAGCTCTATCTTCATATTTATAGCCATCTTGTTATCATCCTTTCTTGATTCTGACGTTTGACAACAACTTTGAAAACGCAGACTTTGTTTTGTTGCACACTGTTCCTGTTCTGTATGAGAAGTATGAAGATAAGATCGACCCATTAGCGGAAAAGGCACTAATTGAGTTCAAAAAGCACTACGCCGTGTTTGAAGAAAAGGTTTTGAGCAAGATCCCAAAAGGGCCATTGAAAGGTAAGAAGGCTTAAACTGGGTTTGGTTGGGTGTCTTCTTCCCTCACAAAAAAGCGGTAACCACATGTTTATTGATCTCTTTCTCGTTGTCTTTTGAATGCACTCATCATAGTATAGTTGTTGTTCAATCACAAGGGTGGTTTTCGCAATTTAGTGGGTTTGTTCTGCAAATGGTGAATTTGTAAGTTATGTTATTAGTTGTATGGGAACTTTCATGAGGGGAAGTACTTTGGTTTGTGGTTAGCTTAGCTAATTTTATATACTTTTTTTTCTCTCTTTCGTTCCAATTTGGGTGATGCCTTGAGGGAAAGAATTATTGAACTAATTTTAATAATATTCAAACTTTTGAATTG
mRNA sequence
CCATTTTCGTTACTTTTCAAATTCCTTCAACTCTTCTTCTAAAACCCTAGTTTCTCTCTCTCTGCATCGAGTTGCTTGATTTTTCTTCTTCAGATCTTGGTCACTGCAATCGCCATCGATCAATCATGGCGGAACACTCTGACAACGTTGAGTCGAAATCGGAGTCATTGATCGACAAGATAGTCGAGAAGATTCATGATCATGATTCTTCTTCGTCGGGATCAGACTCTGAAACCGAGGGATCCTTGAAGGAGAAGGTCTTCCGCCTTTTTGGAAGGGAGAGGCCAGTTCATCATGTCTTCGGCGGTGGAAAACCTGCTGATTTATTCTTGTGGAGGAATAAGAAGATCTCAGCTGGTGTCCTTACTGGAGCCACTGTTATCTGGGTTTTCTTTGAACTGCTCGAGTGCCATCTGCTTACGTTTGTTTCTCGTTCTCTGATCCTCTCTCTTGGGCTCTTGTTTGTTTGGTCCAATGCCCACACATTTATCTACAAGAGTCCACCCCGAATCCCAGAAGTTCAACTTCCTGCGGACCCCTTCCTGGAGCTTGCTTCAACTTTGAGGGCGGAAATCAATTGTGGTTTTGCATTATTGCGGGACATTGCGACTGGAAGAGATTTGAAGAAATTCATCACTGCAATCGCTGGCTTGTGGGTTCTGTCAATCGTGGGAAGCTGGTGCAATTTCTTGACGTTGTTCTACATAAACTTTGTTTTGTTGCACACTGTTCCTGTTCTGTATGAGAAGTATGAAGATAAGATCGACCCATTAGCGGAAAAGGCACTAATTGAGTTCAAAAAGCACTACGCCGTGTTTGAAGAAAAGGTTTTGAGCAAGATCCCAAAAGGGCCATTGAAAGGTAAGAAGGCTTAAACTGGGTTTGGTTGGGTGTCTTCTTCCCTCACAAAAAAGCGGTAACCACATGTTTATTGATCTCTTTCTCGTTGTCTTTTGAATGCACTCATCATAGTATAGTTGTTGTTCAATCACAAGGGTGGTTTTCGCAATTTAGTGGGTTTGTTCTGCAAATGGTGAATTTGTAAGTTATGTTATTAGTTGTATGGGAACTTTCATGAGGGGAAGTACTTTGGTTTGTGGTTAGCTTAGCTAATTTTATATACTTTTTTTTCTCTCTTTCGTTCCAATTTGGGTGATGCCTTGAGGGAAAGAATTATTGAACTAATTTTAATAATATTCAAACTTTTGAATTG
Coding sequence (CDS)
ATGGCGGAACACTCTGACAACGTTGAGTCGAAATCGGAGTCATTGATCGACAAGATAGTCGAGAAGATTCATGATCATGATTCTTCTTCGTCGGGATCAGACTCTGAAACCGAGGGATCCTTGAAGGAGAAGGTCTTCCGCCTTTTTGGAAGGGAGAGGCCAGTTCATCATGTCTTCGGCGGTGGAAAACCTGCTGATTTATTCTTGTGGAGGAATAAGAAGATCTCAGCTGGTGTCCTTACTGGAGCCACTGTTATCTGGGTTTTCTTTGAACTGCTCGAGTGCCATCTGCTTACGTTTGTTTCTCGTTCTCTGATCCTCTCTCTTGGGCTCTTGTTTGTTTGGTCCAATGCCCACACATTTATCTACAAGAGTCCACCCCGAATCCCAGAAGTTCAACTTCCTGCGGACCCCTTCCTGGAGCTTGCTTCAACTTTGAGGGCGGAAATCAATTGTGGTTTTGCATTATTGCGGGACATTGCGACTGGAAGAGATTTGAAGAAATTCATCACTGCAATCGCTGGCTTGTGGGTTCTGTCAATCGTGGGAAGCTGGTGCAATTTCTTGACGTTGTTCTACATAAACTTTGTTTTGTTGCACACTGTTCCTGTTCTGTATGAGAAGTATGAAGATAAGATCGACCCATTAGCGGAAAAGGCACTAATTGAGTTCAAAAAGCACTACGCCGTGTTTGAAGAAAAGGTTTTGAGCAAGATCCCAAAAGGGCCATTGAAAGGTAAGAAGGCTTAA
Protein sequence
MAEHSDNVESKSESLIDKIVEKIHDHDSSSSGSDSETEGSLKEKVFRLFGRERPVHHVFGGGKPADLFLWRNKKISAGVLTGATVIWVFFELLECHLLTFVSRSLILSLGLLFVWSNAHTFIYKSPPRIPEVQLPADPFLELASTLRAEINCGFALLRDIATGRDLKKFITAIAGLWVLSIVGSWCNFLTLFYINFVLLHTVPVLYEKYEDKIDPLAEKALIEFKKHYAVFEEKVLSKIPKGPLKGKKA
Homology
BLAST of CmaCh00G003400 vs. ExPASy Swiss-Prot
Match:
Q9SUR3 (Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1)
HSP 1 Score: 305.8 bits (782), Expect = 4.4e-82
Identity = 161/250 (64.40%), Postives = 189/250 (75.60%), Query Frame = 0
Query: 13 ESLIDKIVEKIH---DHDSSSSGSDSETE-----------GSLKEKVFRLFGRERPVHHV 72
ESL+DKI EKIH D SSSS SD E E S+K KV+RLFGRE+PVH V
Sbjct: 24 ESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPSSPSSSMKSKVYRLFGREQPVHKV 83
Query: 73 FGGGKPADLFLWRNKKISAGVLTGATVIWVFFELLECHLLTFVSRSLILSLGLLFVWSNA 132
GGGKPAD+F+W+NKK+S GVL GAT WV FEL+E HLLT + +I+ L +LF+WSNA
Sbjct: 84 LGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNA 143
Query: 133 HTFIYKSPPRIPEVQLPADPFLELASTLRAEINCGFALLRDIATGRDLKKFITAIAGLWV 192
FI KSPP+IPEV +P +P L+LAS LR EIN GF+ LR+IA+GRDLKKF+ AIAGLWV
Sbjct: 144 TMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWV 203
Query: 193 LSIVGSWCNFLTLFYINFVLLHTVPVLYEKYEDKIDPLAEKALIEFKKHYAVFEEKVLSK 249
LSI+G NFLTL YI VLL TVP+ Y+KYEDK+DPL EKA+IE KK YAV +EKVLSK
Sbjct: 204 LSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSK 263
BLAST of CmaCh00G003400 vs. ExPASy Swiss-Prot
Match:
O82352 (Reticulon-like protein B5 OS=Arabidopsis thaliana OX=3702 GN=RTNLB5 PE=1 SV=1)
HSP 1 Score: 295.0 bits (754), Expect = 7.7e-79
Identity = 151/252 (59.92%), Postives = 191/252 (75.79%), Query Frame = 0
Query: 1 MAEHSDNVESKSESLIDKIVEKIHDHDSSSSGSDSETE-----GSLKEKVFRLFGRERPV 60
MAE + ESL++KI EKIH HDSSSS S+SE E ++K K++R+FGRE+PV
Sbjct: 1 MAEEIEKSVPTEESLMEKISEKIHHHDSSSS-SESEYEKPDSPSAVKAKIYRMFGREKPV 60
Query: 61 HHVFGGGKPADLFLWRNKKISAGVLTGATVIWVFFELLECHLLTFVSRSLILSLGLLFVW 120
H V GGGKPAD+FLWR+KK+S VL AT IWV FEL+E HLL+ + IL+LG LF+W
Sbjct: 61 HKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLW 120
Query: 121 SNAHTFIYKSPPRIPEVQLPADPFLELASTLRAEINCGFALLRDIATGRDLKKFITAIAG 180
SNAHT I K+ P+IPE+ +P + FL +AS+LR E+N F +LR IA GRDLKKF+ + G
Sbjct: 121 SNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVG 180
Query: 181 LWVLSIVGSWCNFLTLFYINFVLLHTVPVLYEKYEDKIDPLAEKALIEFKKHYAVFEEKV 240
LW++S+VG+W NFLTL YI FV+LHTVP+LYEK+EDK+DPLAEKA+ E +K Y VF+EKV
Sbjct: 181 LWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKV 240
Query: 241 LSKIPKGPLKGK 248
LSKIP LK K
Sbjct: 241 LSKIPIASLKAK 251
BLAST of CmaCh00G003400 vs. ExPASy Swiss-Prot
Match:
Q6DBN4 (Reticulon-like protein B6 OS=Arabidopsis thaliana OX=3702 GN=RTNLB6 PE=1 SV=1)
HSP 1 Score: 295.0 bits (754), Expect = 7.7e-79
Identity = 151/252 (59.92%), Postives = 188/252 (74.60%), Query Frame = 0
Query: 1 MAEHSDNVESKSESLIDKIVEKIHDHDSSSSGSDSETE-----GSLKEKVFRLFGRERPV 60
MAE + K ESL++KI +KIHDHDSSSS SDSE E +LK K++RLFGRE+PV
Sbjct: 1 MAEELEKSMHKEESLMEKIADKIHDHDSSSS-SDSEHEKPESPSALKAKIYRLFGREKPV 60
Query: 61 HHVFGGGKPADLFLWRNKKISAGVLTGATVIWVFFELLECHLLTFVSRSLILSLGLLFVW 120
H V GGG PAD+FLWR+KK+SA VL AT IWV FEL+E H L+ V LI +L LF+
Sbjct: 61 HKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLL 120
Query: 121 SNAHTFIYKSPPRIPEVQLPADPFLELASTLRAEINCGFALLRDIATGRDLKKFITAIAG 180
SNAH F+ K+PP+IPE+ + + FL + S LR E+N F +LR IA GRDLKKF+ + G
Sbjct: 121 SNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFG 180
Query: 181 LWVLSIVGSWCNFLTLFYINFVLLHTVPVLYEKYEDKIDPLAEKALIEFKKHYAVFEEKV 240
LW++S+VG+W NFLTL YI FV+LHTVP+LYEK+EDK+DP+AEK L E KKHY VF+EKV
Sbjct: 181 LWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKV 240
Query: 241 LSKIPKGPLKGK 248
LSK+P LK K
Sbjct: 241 LSKLPVASLKAK 251
BLAST of CmaCh00G003400 vs. ExPASy Swiss-Prot
Match:
Q9SUT9 (Reticulon-like protein B2 OS=Arabidopsis thaliana OX=3702 GN=RTNLB2 PE=1 SV=1)
HSP 1 Score: 292.7 bits (748), Expect = 3.8e-78
Identity = 149/246 (60.57%), Postives = 185/246 (75.20%), Query Frame = 0
Query: 13 ESLIDKIVEKIHDHDSSSSGSDSETEG----------SLKEKVFRLFGRERPVHHVFGGG 72
ESL++K+ EKIH SSS S S+ E SLK KV+RLFGRERPVH V GGG
Sbjct: 24 ESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLGGG 83
Query: 73 KPADLFLWRNKKISAGVLTGATVIWVFFELLECHLLTFVSRSLILSLGLLFVWSNAHTFI 132
KPAD+F+W++KK+S GV GATV WV FEL+E HLLT + +I++L +LF+WSNA FI
Sbjct: 84 KPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFI 143
Query: 133 YKSPPRIPEVQLPADPFLELASTLRAEINCGFALLRDIATGRDLKKFITAIAGLWVLSIV 192
+KSPP+IPEV +P +P L+LAS LR EIN G + LR+IA+GRD+KKF++AIAGLWVLSI+
Sbjct: 144 HKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSIL 203
Query: 193 GSWCNFLTLFYINFVLLHTVPVLYEKYEDKIDPLAEKALIEFKKHYAVFEEKVLSKIPKG 249
G +FLTL YI VLL TVP+ Y+KYEDK+D EKA+ E KK YAV + KV SKIP+G
Sbjct: 204 GGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSKIPRG 263
BLAST of CmaCh00G003400 vs. ExPASy Swiss-Prot
Match:
Q9FFS0 (Reticulon-like protein B4 OS=Arabidopsis thaliana OX=3702 GN=RTNLB4 PE=1 SV=1)
HSP 1 Score: 290.4 bits (742), Expect = 1.9e-77
Identity = 153/248 (61.69%), Postives = 179/248 (72.18%), Query Frame = 0
Query: 13 ESLIDKIVEKIHDHDSSSSGSDSE--------TEGSLKEKVFRLFGRERPVHHVFGGGKP 72
ES+++KIVEKIH H SSS SDS+ + S K K++RLFGRE+PVH V GGGKP
Sbjct: 9 ESILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKP 68
Query: 73 ADLFLWRNKKISAGVLTGATVIWVFFELLECHLLTFVSRSLILSLGLLFVWSNAHTFIYK 132
AD+FLWRNKK+S GVL T WV FEL E HLL F+ I +L LF+WSNA TFI+K
Sbjct: 69 ADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHK 128
Query: 133 SPPRIPEVQLPADPFLELASTLRAEINCGFALLRDIATGRDLKKFITAIAGLWVLSIVGS 192
S P IPEV +P DP L+L S LR EIN G LLR+IA+G+D+KKFI IAGLWVLSI+GS
Sbjct: 129 STPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGS 188
Query: 193 WCNFLTLFYINFVLLHTVPVLYEKYEDKIDPLAEKALIEFKKHYAVFEEKVL----SKIP 249
NFLTLFY VLL T+PVLYEKYEDK+D EKA+ E KK YAV +EKVL SKIP
Sbjct: 189 CYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISKIP 248
BLAST of CmaCh00G003400 vs. TAIR 10
Match:
AT4G23630.1 (VIRB2-interacting protein 1 )
HSP 1 Score: 305.8 bits (782), Expect = 3.1e-83
Identity = 161/250 (64.40%), Postives = 189/250 (75.60%), Query Frame = 0
Query: 13 ESLIDKIVEKIH---DHDSSSSGSDSETE-----------GSLKEKVFRLFGRERPVHHV 72
ESL+DKI EKIH D SSSS SD E E S+K KV+RLFGRE+PVH V
Sbjct: 24 ESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPSSPSSSMKSKVYRLFGREQPVHKV 83
Query: 73 FGGGKPADLFLWRNKKISAGVLTGATVIWVFFELLECHLLTFVSRSLILSLGLLFVWSNA 132
GGGKPAD+F+W+NKK+S GVL GAT WV FEL+E HLLT + +I+ L +LF+WSNA
Sbjct: 84 LGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNA 143
Query: 133 HTFIYKSPPRIPEVQLPADPFLELASTLRAEINCGFALLRDIATGRDLKKFITAIAGLWV 192
FI KSPP+IPEV +P +P L+LAS LR EIN GF+ LR+IA+GRDLKKF+ AIAGLWV
Sbjct: 144 TMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWV 203
Query: 193 LSIVGSWCNFLTLFYINFVLLHTVPVLYEKYEDKIDPLAEKALIEFKKHYAVFEEKVLSK 249
LSI+G NFLTL YI VLL TVP+ Y+KYEDK+DPL EKA+IE KK YAV +EKVLSK
Sbjct: 204 LSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSK 263
BLAST of CmaCh00G003400 vs. TAIR 10
Match:
AT2G46170.1 (Reticulon family protein )
HSP 1 Score: 295.0 bits (754), Expect = 5.5e-80
Identity = 151/252 (59.92%), Postives = 191/252 (75.79%), Query Frame = 0
Query: 1 MAEHSDNVESKSESLIDKIVEKIHDHDSSSSGSDSETE-----GSLKEKVFRLFGRERPV 60
MAE + ESL++KI EKIH HDSSSS S+SE E ++K K++R+FGRE+PV
Sbjct: 1 MAEEIEKSVPTEESLMEKISEKIHHHDSSSS-SESEYEKPDSPSAVKAKIYRMFGREKPV 60
Query: 61 HHVFGGGKPADLFLWRNKKISAGVLTGATVIWVFFELLECHLLTFVSRSLILSLGLLFVW 120
H V GGGKPAD+FLWR+KK+S VL AT IWV FEL+E HLL+ + IL+LG LF+W
Sbjct: 61 HKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLW 120
Query: 121 SNAHTFIYKSPPRIPEVQLPADPFLELASTLRAEINCGFALLRDIATGRDLKKFITAIAG 180
SNAHT I K+ P+IPE+ +P + FL +AS+LR E+N F +LR IA GRDLKKF+ + G
Sbjct: 121 SNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVG 180
Query: 181 LWVLSIVGSWCNFLTLFYINFVLLHTVPVLYEKYEDKIDPLAEKALIEFKKHYAVFEEKV 240
LW++S+VG+W NFLTL YI FV+LHTVP+LYEK+EDK+DPLAEKA+ E +K Y VF+EKV
Sbjct: 181 LWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKV 240
Query: 241 LSKIPKGPLKGK 248
LSKIP LK K
Sbjct: 241 LSKIPIASLKAK 251
BLAST of CmaCh00G003400 vs. TAIR 10
Match:
AT3G61560.1 (Reticulon family protein )
HSP 1 Score: 295.0 bits (754), Expect = 5.5e-80
Identity = 151/252 (59.92%), Postives = 188/252 (74.60%), Query Frame = 0
Query: 1 MAEHSDNVESKSESLIDKIVEKIHDHDSSSSGSDSETE-----GSLKEKVFRLFGRERPV 60
MAE + K ESL++KI +KIHDHDSSSS SDSE E +LK K++RLFGRE+PV
Sbjct: 1 MAEELEKSMHKEESLMEKIADKIHDHDSSSS-SDSEHEKPESPSALKAKIYRLFGREKPV 60
Query: 61 HHVFGGGKPADLFLWRNKKISAGVLTGATVIWVFFELLECHLLTFVSRSLILSLGLLFVW 120
H V GGG PAD+FLWR+KK+SA VL AT IWV FEL+E H L+ V LI +L LF+
Sbjct: 61 HKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLL 120
Query: 121 SNAHTFIYKSPPRIPEVQLPADPFLELASTLRAEINCGFALLRDIATGRDLKKFITAIAG 180
SNAH F+ K+PP+IPE+ + + FL + S LR E+N F +LR IA GRDLKKF+ + G
Sbjct: 121 SNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFG 180
Query: 181 LWVLSIVGSWCNFLTLFYINFVLLHTVPVLYEKYEDKIDPLAEKALIEFKKHYAVFEEKV 240
LW++S+VG+W NFLTL YI FV+LHTVP+LYEK+EDK+DP+AEK L E KKHY VF+EKV
Sbjct: 181 LWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKV 240
Query: 241 LSKIPKGPLKGK 248
LSK+P LK K
Sbjct: 241 LSKLPVASLKAK 251
BLAST of CmaCh00G003400 vs. TAIR 10
Match:
AT4G11220.1 (VIRB2-interacting protein 2 )
HSP 1 Score: 292.7 bits (748), Expect = 2.7e-79
Identity = 149/246 (60.57%), Postives = 185/246 (75.20%), Query Frame = 0
Query: 13 ESLIDKIVEKIHDHDSSSSGSDSETEG----------SLKEKVFRLFGRERPVHHVFGGG 72
ESL++K+ EKIH SSS S S+ E SLK KV+RLFGRERPVH V GGG
Sbjct: 24 ESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLGGG 83
Query: 73 KPADLFLWRNKKISAGVLTGATVIWVFFELLECHLLTFVSRSLILSLGLLFVWSNAHTFI 132
KPAD+F+W++KK+S GV GATV WV FEL+E HLLT + +I++L +LF+WSNA FI
Sbjct: 84 KPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFI 143
Query: 133 YKSPPRIPEVQLPADPFLELASTLRAEINCGFALLRDIATGRDLKKFITAIAGLWVLSIV 192
+KSPP+IPEV +P +P L+LAS LR EIN G + LR+IA+GRD+KKF++AIAGLWVLSI+
Sbjct: 144 HKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSIL 203
Query: 193 GSWCNFLTLFYINFVLLHTVPVLYEKYEDKIDPLAEKALIEFKKHYAVFEEKVLSKIPKG 249
G +FLTL YI VLL TVP+ Y+KYEDK+D EKA+ E KK YAV + KV SKIP+G
Sbjct: 204 GGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSKIPRG 263
BLAST of CmaCh00G003400 vs. TAIR 10
Match:
AT5G41600.1 (VIRB2-interacting protein 3 )
HSP 1 Score: 290.4 bits (742), Expect = 1.3e-78
Identity = 153/248 (61.69%), Postives = 179/248 (72.18%), Query Frame = 0
Query: 13 ESLIDKIVEKIHDHDSSSSGSDSE--------TEGSLKEKVFRLFGRERPVHHVFGGGKP 72
ES+++KIVEKIH H SSS SDS+ + S K K++RLFGRE+PVH V GGGKP
Sbjct: 9 ESILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKP 68
Query: 73 ADLFLWRNKKISAGVLTGATVIWVFFELLECHLLTFVSRSLILSLGLLFVWSNAHTFIYK 132
AD+FLWRNKK+S GVL T WV FEL E HLL F+ I +L LF+WSNA TFI+K
Sbjct: 69 ADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHK 128
Query: 133 SPPRIPEVQLPADPFLELASTLRAEINCGFALLRDIATGRDLKKFITAIAGLWVLSIVGS 192
S P IPEV +P DP L+L S LR EIN G LLR+IA+G+D+KKFI IAGLWVLSI+GS
Sbjct: 129 STPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGS 188
Query: 193 WCNFLTLFYINFVLLHTVPVLYEKYEDKIDPLAEKALIEFKKHYAVFEEKVL----SKIP 249
NFLTLFY VLL T+PVLYEKYEDK+D EKA+ E KK YAV +EKVL SKIP
Sbjct: 189 CYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISKIP 248
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9SUR3 | 4.4e-82 | 64.40 | Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1 | [more] |
O82352 | 7.7e-79 | 59.92 | Reticulon-like protein B5 OS=Arabidopsis thaliana OX=3702 GN=RTNLB5 PE=1 SV=1 | [more] |
Q6DBN4 | 7.7e-79 | 59.92 | Reticulon-like protein B6 OS=Arabidopsis thaliana OX=3702 GN=RTNLB6 PE=1 SV=1 | [more] |
Q9SUT9 | 3.8e-78 | 60.57 | Reticulon-like protein B2 OS=Arabidopsis thaliana OX=3702 GN=RTNLB2 PE=1 SV=1 | [more] |
Q9FFS0 | 1.9e-77 | 61.69 | Reticulon-like protein B4 OS=Arabidopsis thaliana OX=3702 GN=RTNLB4 PE=1 SV=1 | [more] |