Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTCCGACGTCGAGATCTCCTCCTCTGCATCATGGTTTTGACGTTAATGGCGAAATCCAATGCTGGGATGATAGCTATTTATTGGGGTCAAAATGGAAATGAAGGCACTTTGGCAGACACCTGCGCCACCGGAAACTACCAGATTGTTATCCTTGCTTTTCTATCCGTCTTCGGCAACGGACAGACGCCGCAGATCAACCTCGCCGGCCACTGCGACCCCTTTAGTAATGGATGCATTAAATTGAGCTCCGACGTCAAGTCGTGCCAAGCTAGAGGCATCAAGGTGATTATATTTTATTATTGAATTAGGTTTATTTAATCACTTCAGACTCGGTGGTCAAACTTGACTTGAATAGATACGAGATTTCCCATTTAGACATAAACTACTTTGTTTTGGGCTTTCTCTCTTTCATTTATAAACTTACGATCTTCCAATAAATTAATCAATGTGGGATTCACTCTCAATATTGACTCAGGATCTTCCACTAAATTAACTAACGTGAGACTCACTCCCAATAATTCTCAATACTAATTTCATAATAGGTTATACTTTCCATCGGAGGCGGCGTGGGAAGCTACTTCCTCCCATCGCCCGAAGACGCCAAAAAAGTTGCAGACTACCTATGGAACAACTATTTAGGAGGACATTCCCCGTCCTCACCTCGTCCGCTCGGCAATGTCGTGCTCGATGGTGTCGACTTCGACATCGAAGGTGGGACAAACAAGCATTGGGACGAGCTTGCAAGGGCTCTTTTGGACTTCGGCAACCGAAGCGGCAAGAAGATGTTCATCACGGCAGCTCCACAGTGCCCTTTCCCCGACGCCTGGCTCGGCGACGCGCTGATGACCGGTCTTTTCGACTTCGTTTGGGTTCAATTCTACAACAACCCACCATGTCAATTTTCAGGAGACGGCACCAATCTTTTTGATGCTTGGAAAGTATGGACTTCCAAAATTCCTCATGCACAAATCTTCTTGGGCCTCCCGGCGGCTCCGGCGGCTGCCGGCTCTGGGTTCATTCCGGCCGATGCTCTCAAATCAGTGGTGCTACCAGTCGTCAAACGCTCACCTGAGTACGGCGGCGTTATGCTGTGGTCGAAGTTTTATGATGATCAAACTGGCTATAGCTCTTCCATTAAACAAGTTGTTTGA
mRNA sequence
ATGGAGTTCCGACGTCGAGATCTCCTCCTCTGCATCATGGTTTTGACGTTAATGGCGAAATCCAATGCTGGGATGATAGCTATTTATTGGGGTCAAAATGGAAATGAAGGCACTTTGGCAGACACCTGCGCCACCGGAAACTACCAGATTGTTATCCTTGCTTTTCTATCCGTCTTCGGCAACGGACAGACGCCGCAGATCAACCTCGCCGGCCACTGCGACCCCTTTAGTAATGGATGCATTAAATTGAGCTCCGACGTCAAGTCGTGCCAAGCTAGAGGCATCAAGGTTATACTTTCCATCGGAGGCGGCGTGGGAAGCTACTTCCTCCCATCGCCCGAAGACGCCAAAAAAGTTGCAGACTACCTATGGAACAACTATTTAGGAGGACATTCCCCGTCCTCACCTCGTCCGCTCGGCAATGTCGTGCTCGATGGTGTCGACTTCGACATCGAAGGTGGGACAAACAAGCATTGGGACGAGCTTGCAAGGGCTCTTTTGGACTTCGGCAACCGAAGCGGCAAGAAGATGTTCATCACGGCAGCTCCACAGTGCCCTTTCCCCGACGCCTGGCTCGGCGACGCGCTGATGACCGGTCTTTTCGACTTCGTTTGGGTTCAATTCTACAACAACCCACCATGTCAATTTTCAGGAGACGGCACCAATCTTTTTGATGCTTGGAAAGTATGGACTTCCAAAATTCCTCATGCACAAATCTTCTTGGGCCTCCCGGCGGCTCCGGCGGCTGCCGGCTCTGGGTTCATTCCGGCCGATGCTCTCAAATCAGTGGTGCTACCAGTCGTCAAACGCTCACCTGAGTACGGCGGCGTTATGCTGTGGTCGAAGTTTTATGATGATCAAACTGGCTATAGCTCTTCCATTAAACAAGTTGTTTGA
Coding sequence (CDS)
ATGGAGTTCCGACGTCGAGATCTCCTCCTCTGCATCATGGTTTTGACGTTAATGGCGAAATCCAATGCTGGGATGATAGCTATTTATTGGGGTCAAAATGGAAATGAAGGCACTTTGGCAGACACCTGCGCCACCGGAAACTACCAGATTGTTATCCTTGCTTTTCTATCCGTCTTCGGCAACGGACAGACGCCGCAGATCAACCTCGCCGGCCACTGCGACCCCTTTAGTAATGGATGCATTAAATTGAGCTCCGACGTCAAGTCGTGCCAAGCTAGAGGCATCAAGGTTATACTTTCCATCGGAGGCGGCGTGGGAAGCTACTTCCTCCCATCGCCCGAAGACGCCAAAAAAGTTGCAGACTACCTATGGAACAACTATTTAGGAGGACATTCCCCGTCCTCACCTCGTCCGCTCGGCAATGTCGTGCTCGATGGTGTCGACTTCGACATCGAAGGTGGGACAAACAAGCATTGGGACGAGCTTGCAAGGGCTCTTTTGGACTTCGGCAACCGAAGCGGCAAGAAGATGTTCATCACGGCAGCTCCACAGTGCCCTTTCCCCGACGCCTGGCTCGGCGACGCGCTGATGACCGGTCTTTTCGACTTCGTTTGGGTTCAATTCTACAACAACCCACCATGTCAATTTTCAGGAGACGGCACCAATCTTTTTGATGCTTGGAAAGTATGGACTTCCAAAATTCCTCATGCACAAATCTTCTTGGGCCTCCCGGCGGCTCCGGCGGCTGCCGGCTCTGGGTTCATTCCGGCCGATGCTCTCAAATCAGTGGTGCTACCAGTCGTCAAACGCTCACCTGAGTACGGCGGCGTTATGCTGTGGTCGAAGTTTTATGATGATCAAACTGGCTATAGCTCTTCCATTAAACAAGTTGTTTGA
Protein sequence
MEFRRRDLLLCIMVLTLMAKSNAGMIAIYWGQNGNEGTLADTCATGNYQIVILAFLSVFGNGQTPQINLAGHCDPFSNGCIKLSSDVKSCQARGIKVILSIGGGVGSYFLPSPEDAKKVADYLWNNYLGGHSPSSPRPLGNVVLDGVDFDIEGGTNKHWDELARALLDFGNRSGKKMFITAAPQCPFPDAWLGDALMTGLFDFVWVQFYNNPPCQFSGDGTNLFDAWKVWTSKIPHAQIFLGLPAAPAAAGSGFIPADALKSVVLPVVKRSPEYGGVMLWSKFYDDQTGYSSSIKQVV
Homology
BLAST of CmaCh00G003390 vs. ExPASy Swiss-Prot
Match:
P51614 (Acidic endochitinase OS=Vitis vinifera OX=29760 GN=CHIT3 PE=2 SV=1)
HSP 1 Score: 404.4 bits (1038), Expect = 1.1e-111
Identity = 191/294 (64.97%), Postives = 230/294 (78.23%), Query Frame = 0
Query: 8 LLLCIMVLTLMAKSNAGMIAIYWGQNGNEGTLADTCATGNYQIVILAFLSVFGNGQTPQI 67
LL+ + VL L+ S AG IAIYWGQNGNEGTL TC TG Y V +AFL+ FGNGQTP+I
Sbjct: 10 LLISLSVLALLQTSYAGGIAIYWGQNGNEGTLTQTCNTGKYSYVNIAFLNKFGNGQTPEI 69
Query: 68 NLAGHCDPFSNGCIKLSSDVKSCQARGIKVILSIGGGVGSYFLPSPEDAKKVADYLWNNY 127
NLAGHC+P SNGC +S+ +++CQ RGIKV+LSIGGG GSY L S DA+ VA+YLWNN+
Sbjct: 70 NLAGHCNPASNGCTSVSTGIRNCQNRGIKVMLSIGGGAGSYSLSSSNDAQNVANYLWNNF 129
Query: 128 LGGHSPSSPRPLGNVVLDGVDFDIEGGTNKHWDELARAL--LDFGNRSGKKMFITAAPQC 187
LGG SS RPLG+ VLDG+DFDIE G+ HWD+LARAL ++F G+K+++TAAPQC
Sbjct: 130 LGGQ--SSSRPLGDAVLDGIDFDIELGSTLHWDDLARALSRIEFQQERGRKVYLTAAPQC 189
Query: 188 PFPDAWLGDALMTGLFDFVWVQFYNNPPCQF-SGDGTNLFDAWKVWTSKIPHAQIFLGLP 247
PFPD G AL TGLFD+VWVQFYNNPPCQ+ SG+ NL ++W WTS I F+GLP
Sbjct: 190 PFPDKVPGTALNTGLFDYVWVQFYNNPPCQYSSGNTNNLLNSWNRWTSSINSTGSFMGLP 249
Query: 248 AAPAAAGSGFIPADALKSVVLPVVKRSPEYGGVMLWSKFYDDQTGYSSSIKQVV 299
A+ AAAG GFIPA+ L S +LPV+KRSP+YGGVMLWSK+YDDQ+GYSSSIK V
Sbjct: 250 ASSAAAGRGFIPANVLTSQILPVIKRSPKYGGVMLWSKYYDDQSGYSSSIKSSV 301
BLAST of CmaCh00G003390 vs. ExPASy Swiss-Prot
Match:
P23472 (Hevamine-A OS=Hevea brasiliensis OX=3981 PE=1 SV=2)
HSP 1 Score: 393.3 bits (1009), Expect = 2.5e-108
Identity = 184/298 (61.74%), Postives = 233/298 (78.19%), Query Frame = 0
Query: 1 MEFRRRDLLLCIMVLTLMAKS---NAGMIAIYWGQNGNEGTLADTCATGNYQIVILAFLS 60
M R + +LL ++ ++L+ S + G IAIYWGQNGNEGTL TC+T Y V +AFL+
Sbjct: 1 MAKRTQAILLLLLAISLIMSSSHVDGGGIAIYWGQNGNEGTLTQTCSTRKYSYVNIAFLN 60
Query: 61 VFGNGQTPQINLAGHCDPFSNGCIKLSSDVKSCQARGIKVILSIGGGVGSYFLPSPEDAK 120
FGNGQTPQINLAGHC+P + GC +S+ ++SCQ +GIKV+LS+GGG+GSY L S DAK
Sbjct: 61 KFGNGQTPQINLAGHCNPAAGGCTIVSNGIRSCQIQGIKVMLSLGGGIGSYTLASQADAK 120
Query: 121 KVADYLWNNYLGGHSPSSPRPLGNVVLDGVDFDIEGGTNKHWDELARALLDFGNRSGKKM 180
VADYLWNN+LGG SS RPLG+ VLDG+DFDIE G+ +WD+LAR L + ++ GKK+
Sbjct: 121 NVADYLWNNFLGG--KSSSRPLGDAVLDGIDFDIEHGSTLYWDDLARYLSAY-SKQGKKV 180
Query: 181 FITAAPQCPFPDAWLGDALMTGLFDFVWVQFYNNPPCQF-SGDGTNLFDAWKVWTSKIPH 240
++TAAPQCPFPD +LG AL TGLFD+VWVQFYNNPPCQ+ SG+ N+ ++W WT+ I
Sbjct: 181 YLTAAPQCPFPDRYLGTALNTGLFDYVWVQFYNNPPCQYSSGNINNIINSWNRWTTSINA 240
Query: 241 AQIFLGLPAAPAAAGSGFIPADALKSVVLPVVKRSPEYGGVMLWSKFYDDQTGYSSSI 295
+IFLGLPAAP AAGSG++P D L S +LP +K+SP+YGGVMLWSKFYDD+ GYSSSI
Sbjct: 241 GKIFLGLPAAPEAAGSGYVPPDVLISRILPEIKKSPKYGGVMLWSKFYDDKNGYSSSI 295
BLAST of CmaCh00G003390 vs. ExPASy Swiss-Prot
Match:
P29060 (Acidic endochitinase OS=Nicotiana tabacum OX=4097 PE=1 SV=1)
HSP 1 Score: 392.1 bits (1006), Expect = 5.5e-108
Identity = 189/289 (65.40%), Postives = 225/289 (77.85%), Query Frame = 0
Query: 9 LLCIMVLTLMA-KSNAGMIAIYWGQNGNEGTLADTCATGNYQIVILAFLSVFGNGQTPQI 68
LL +VL L A K AG I IYWGQNGNEG+LADTCAT NY IV +AFL VFGNGQ P +
Sbjct: 7 LLTALVLFLRALKLEAGDIVIYWGQNGNEGSLADTCATNNYAIVNIAFLVVFGNGQNPVL 66
Query: 69 NLAGHCDPFSNGCIKLSSDVKSCQARGIKVILSIGGGVGSYFLPSPEDAKKVADYLWNNY 128
NLAGHCDP + C LS+D+++CQ +GIKV+LS+GGG GSYFL S +DA+ VA+YLWNNY
Sbjct: 67 NLAGHCDPNAGACTGLSNDIRACQNQGIKVMLSLGGGAGSYFLSSADDARNVANYLWNNY 126
Query: 129 LGGHSPSSPRPLGNVVLDGVDFDIEGGTNKHWDELARALLDFGNRSGKKMFITAAPQCPF 188
LGG S+ RPLG+ VLDG+DFDIEGGT +HWDELA+ L F + +K+++TAAPQCPF
Sbjct: 127 LGGQ--SNTRPLGDAVLDGIDFDIEGGTTQHWDELAKTLSQFSQQ--RKVYLTAAPQCPF 186
Query: 189 PDAWLGDALMTGLFDFVWVQFYNNPPCQFS-GDGTNLFDAWKVWTSKIPHAQIFLGLPAA 248
PD WL AL TGLFD+VWVQFYNNPPCQ+S G NL + W W + I +IFLGLPAA
Sbjct: 187 PDTWLNGALSTGLFDYVWVQFYNNPPCQYSGGSADNLKNYWNQWNA-IQAGKIFLGLPAA 246
Query: 249 PAAAGSGFIPADALKSVVLPVVKRSPEYGGVMLWSKFYDDQTGYSSSIK 296
AAGSGFIP+D L S VLP++ SP+YGGVMLWSKFYD+ GYSS+IK
Sbjct: 247 QGAAGSGFIPSDVLVSQVLPLINGSPKYGGVMLWSKFYDN--GYSSAIK 288
BLAST of CmaCh00G003390 vs. ExPASy Swiss-Prot
Match:
P19172 (Acidic endochitinase OS=Arabidopsis thaliana OX=3702 GN=CHIB1 PE=2 SV=2)
HSP 1 Score: 379.8 bits (974), Expect = 2.8e-104
Identity = 174/281 (61.92%), Postives = 218/281 (77.58%), Query Frame = 0
Query: 15 LTLMAKSNAGMIAIYWGQNGNEGTLADTCATGNYQIVILAFLSVFGNGQTPQINLAGHCD 74
L+ + ++ G IAIYWGQNGNEG L+ TCATG Y V +AFL FGNGQTP++NLAGHC+
Sbjct: 21 LSKPSDASRGGIAIYWGQNGNEGNLSATCATGRYAYVNVAFLVKFGNGQTPELNLAGHCN 80
Query: 75 PFSNGCIKLSSDVKSCQARGIKVILSIGGGVGSYFLPSPEDAKKVADYLWNNYLGGHSPS 134
P +N C S VK CQ+RGIKV+LS+GGG+G+Y + S EDAK +ADYLWNN+LGG S
Sbjct: 81 PAANTCTHFGSQVKDCQSRGIKVMLSLGGGIGNYSIGSREDAKVIADYLWNNFLGG--KS 140
Query: 135 SPRPLGNVVLDGVDFDIEGGTNKHWDELARALLDFGNRSGKKMFITAAPQCPFPDAWLGD 194
S RPLG+ VLDG+DF+IE G+ +HWD+LAR L F +R G+K+++T APQCPFPD +G
Sbjct: 141 SSRPLGDAVLDGIDFNIELGSPQHWDDLARTLSKFSHR-GRKIYLTGAPQCPFPDRLMGS 200
Query: 195 ALMTGLFDFVWVQFYNNPPCQF-SGDGTNLFDAWKVWTSKIPHAQIFLGLPAAPAAAGSG 254
AL T FD+VW+QFYNNPPC + SG+ NLFD+W WT+ I + FLGLPAAP AAGSG
Sbjct: 201 ALNTKRFDYVWIQFYNNPPCSYSSGNTQNLFDSWNKWTTSIAAQKFFLGLPAAPEAAGSG 260
Query: 255 FIPADALKSVVLPVVKRSPEYGGVMLWSKFYDDQTGYSSSI 295
+IP D L S +LP +K+S +YGGVMLWSKF+DD+ GYSSSI
Sbjct: 261 YIPPDVLTSQILPTLKKSRKYGGVMLWSKFWDDKNGYSSSI 298
BLAST of CmaCh00G003390 vs. ExPASy Swiss-Prot
Match:
P36910 (Acidic endochitinase SE2 OS=Beta vulgaris OX=161934 GN=SE2 PE=1 SV=1)
HSP 1 Score: 367.9 bits (943), Expect = 1.1e-100
Identity = 178/291 (61.17%), Postives = 216/291 (74.23%), Query Frame = 0
Query: 9 LLCIMVLTLMAKSNAGMIAIYWGQNGNEGTLADTCATGNYQIVILAFLSVFGNGQTPQIN 68
L+ +++ S+ I IYWGQNG+EG+LADTC +GNY VILAF++ FGNGQTP +N
Sbjct: 11 LISLLIFASFESSHGSQIVIYWGQNGDEGSLADTCNSGNYGTVILAFVATFGNGQTPALN 70
Query: 69 LAGHCDPFSNGCIKLSSDVKSCQARGIKVILSIGGGVGSYFLPSPEDAKKVADYLWNNYL 128
LAGHCDP +N C LSSD+K+CQ GIKV+LSIGGG G Y L S +DA ADYLWN YL
Sbjct: 71 LAGHCDPATN-CNSLSSDIKTCQQAGIKVLLSIGGGAGGYSLSSTDDANTFADYLWNTYL 130
Query: 129 GGHSPSSPRPLGNVVLDGVDFDIEGGTNKHWDELARALLDFGNRSGKK-MFITAAPQCPF 188
GG SS RPLG+ VLDG+DFDIE G + WD+LARAL G+ +G+K ++++AAPQCP
Sbjct: 131 GGQ--SSTRPLGDAVLDGIDFDIESGDGRFWDDLARALA--GHNNGQKTVYLSAAPQCPL 190
Query: 189 PDAWLGDALMTGLFDFVWVQFYNNPPCQFSGDGTNLFDAWKVWTSKIPHAQIFLGLPAAP 248
PDA L A+ TGLFD+VWVQFYNNPPCQ+ NL +W WT+ + QIFLGLPA+
Sbjct: 191 PDASLSTAIATGLFDYVWVQFYNNPPCQYDTSADNLLSSWNQWTT-VQANQIFLGLPAST 250
Query: 249 AAAGSGFIPADALKSVVLPVVKRSPEYGGVMLWSKFYDDQTGYSSSIKQVV 299
AAGSGFIPADAL S VLP +K S +YGGVMLWSK YD +GYSS+IK V
Sbjct: 251 DAAGSGFIPADALTSQVLPTIKGSAKYGGVMLWSKAYD--SGYSSAIKSSV 293
BLAST of CmaCh00G003390 vs. TAIR 10
Match:
AT5G24090.1 (chitinase A )
HSP 1 Score: 379.8 bits (974), Expect = 2.0e-105
Identity = 174/281 (61.92%), Postives = 218/281 (77.58%), Query Frame = 0
Query: 15 LTLMAKSNAGMIAIYWGQNGNEGTLADTCATGNYQIVILAFLSVFGNGQTPQINLAGHCD 74
L+ + ++ G IAIYWGQNGNEG L+ TCATG Y V +AFL FGNGQTP++NLAGHC+
Sbjct: 21 LSKPSDASRGGIAIYWGQNGNEGNLSATCATGRYAYVNVAFLVKFGNGQTPELNLAGHCN 80
Query: 75 PFSNGCIKLSSDVKSCQARGIKVILSIGGGVGSYFLPSPEDAKKVADYLWNNYLGGHSPS 134
P +N C S VK CQ+RGIKV+LS+GGG+G+Y + S EDAK +ADYLWNN+LGG S
Sbjct: 81 PAANTCTHFGSQVKDCQSRGIKVMLSLGGGIGNYSIGSREDAKVIADYLWNNFLGG--KS 140
Query: 135 SPRPLGNVVLDGVDFDIEGGTNKHWDELARALLDFGNRSGKKMFITAAPQCPFPDAWLGD 194
S RPLG+ VLDG+DF+IE G+ +HWD+LAR L F +R G+K+++T APQCPFPD +G
Sbjct: 141 SSRPLGDAVLDGIDFNIELGSPQHWDDLARTLSKFSHR-GRKIYLTGAPQCPFPDRLMGS 200
Query: 195 ALMTGLFDFVWVQFYNNPPCQF-SGDGTNLFDAWKVWTSKIPHAQIFLGLPAAPAAAGSG 254
AL T FD+VW+QFYNNPPC + SG+ NLFD+W WT+ I + FLGLPAAP AAGSG
Sbjct: 201 ALNTKRFDYVWIQFYNNPPCSYSSGNTQNLFDSWNKWTTSIAAQKFFLGLPAAPEAAGSG 260
Query: 255 FIPADALKSVVLPVVKRSPEYGGVMLWSKFYDDQTGYSSSI 295
+IP D L S +LP +K+S +YGGVMLWSKF+DD+ GYSSSI
Sbjct: 261 YIPPDVLTSQILPTLKKSRKYGGVMLWSKFWDDKNGYSSSI 298
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P51614 | 1.1e-111 | 64.97 | Acidic endochitinase OS=Vitis vinifera OX=29760 GN=CHIT3 PE=2 SV=1 | [more] |
P23472 | 2.5e-108 | 61.74 | Hevamine-A OS=Hevea brasiliensis OX=3981 PE=1 SV=2 | [more] |
P29060 | 5.5e-108 | 65.40 | Acidic endochitinase OS=Nicotiana tabacum OX=4097 PE=1 SV=1 | [more] |
P19172 | 2.8e-104 | 61.92 | Acidic endochitinase OS=Arabidopsis thaliana OX=3702 GN=CHIB1 PE=2 SV=2 | [more] |
P36910 | 1.1e-100 | 61.17 | Acidic endochitinase SE2 OS=Beta vulgaris OX=161934 GN=SE2 PE=1 SV=1 | [more] |