CmaCh00G003320 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh00G003320
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionubiquitin-conjugating enzyme E2-17 kDa-like
LocationCma_Chr00: 27471822 .. 27475605 (+)
RNA-Seq ExpressionCmaCh00G003320
SyntenyCmaCh00G003320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGTCCTTTGTTTCCCTGCATACCACATTTCGATTGTTTTCTTCCTCAGTTTTCTCGTCGGAGAGGCCTCTCTCGGCTACCGTCCATGGCGTCGAAACGGATCCTGAAGGAGCTCAATGATCTCCAGAAAGATCCTTCTACTTCCTGCAGCGGTGGTTTAGTATTCTTTCTACTCTTGTTCCTTTTTACTATCTCTATATTTTTTTTTTAACTTTCTAATATTGGTCTAGTGATTACGTTTTTCATCGGTTATTGGAGACTCCGAGCAACTTCATTGTTGTTATTTTATTTGGAAATTAAGTGGATCGAAATGTTTGTTTGTGGATTGCGTGAAAAAGTAACAACTCTGAAATTCAATTATCATATTTTGTAATTATCTAAGTAGGCGGAGGTCTACGAAAGTCGATTTTGGAGTTCTTAGCACTAACTTGCATTCTCAATTTAGGGAATGATGTTGGAGGAAAGTTTTCCATCCCCTAGGGATGATCATGGATTTTTATTGAGGAATACTATCTTCATTGATATGAAATTTTTTTGGGGAAGCACAAATCAAAGCCATGAGAGCTTATGTTCAAAGTAGAATATCATACCAGGAGAGTCGTGTTCATCTAACATGGTATCAGAGCCATACCCTAAACTTAGCTATGTCAATAGAATCTTCAAATGTCGAACAAAAGTATTGTGAGCCTTGAAGGCATTGTAAAAAATGACTAAGACTCCAAAAGAAAAAGTAGTCGAGCCTCGATTAATGGGAGGCGTACTTTGTTTGAGGGGAGGTGTTGGATGAAAGTCTCCCATATTGGCTAATTTAGGGAATGATCACGGGTTTATAATCAAGGAATACTATCTCTGTTGGTATGAGGTCTTTTGGGAAGTTCAAAGCAAAGCCATGAGAACTTATGCTCAAAGTGGAAAATATCATACCATTATGGAGAGTCGTGTTCATGTTATAATGTTATAATTAGCTGATTATGCGAATGTCTAGAAAATCGGTTTTGGAGTTCTTAGCATTGACTTGCATTCTCAATTTTGTGGTTTACGCGTAGGATATGGTTTAATTTGGCTCTTCTCTAAACAATTCATCGTATTCCGGAATGGAATTCGGTAATATGGAAACTGAATCGTGTATTAGAGTTTGATTTATTTGTATATGTTAAGCTTATTGAAGCAAGGTTCTATTGAGTCGAAAACTATAGATACCGGTGCATTTTGGCTTATGGATCTTTTTGACTTTAGTTCTCTATACTATAAAGAATTGATTCTATGAATTTTCACGTTTTAAATCATAGTTGTTTTTTAATTGAGCTAGACTCAGAACAGTATAACAGCTTAAGATTTGAGTAGTCAACACTTTCAATTCACTTGGACTTCGTAAATTTCTATAGCCCGTTACCATATGTGGTTCTTGTTTTATTAATTATTCTAATGCCTGTAATATATGTGTTTGTCACTGTTTTTATTACTTATTTGATTAATAACTCAGTAAGTCAGTGCTAGAAGTTATTTTCACACTTCCTGAGCTAAACAGTTCAGTTATGACCACCTAAAGGCCATAAAGTGTTTGACTGGGAAAATAGTATAACATTTGGTATCCAAAAATTATATTTTTTGGTAGATGTATTGACCATCTAAAGGCCACATTTTACGCATCCAAAAAAGCTCATATTTTAATACTTAAGGTATAAACCACACATCACATTGGATGTTATTGATAATTTTCTGCACATTTTTCATGTAAATTGTTTTAGATGTTATCGTTGTCAAATAGGCTTACTGCCTATTTTACCATAGTAGCACTATCTTTAACTAAATGTGAAAACTAGATTTGGGGAAAATAAGTGTAGTGACTTGATTAAGGTGAAAATTTAACTTAACCAGAGATATGTCTTCTTAGGTTCTTTGACACCCATTGGTGGATGGAGCTCCCTTGTTCTTGATTTTGGAATGCTATAGTGTAAATCTTGGGAGTTTATCTCTTAATTTCAGGAATTTTATAATATTTCAATTTCCAGGTAGCTTTCGACTGGGCAGCAAATATTTTATTCTCGTGTGGGGAGGTTATCCATTTAAAAGAACGACCGACTATCAAGGTCACTTCAGGGGTAGATGGGGTTTTTAATGCAATGTTGAGATCGTATTTCTTATGTTGTTTCTTCTAGGAATGGTTTTGATTGGGTTGTGTGCTAATTGGAGACTGTTTTTGCATCCGTCATTGGCTATCGTGGGGGATGGAGTCTTTTCTTTCTCTTCTCTTCTGTTTTCCTTCTTCCTTGATAAATTTTTTAGTTTTGTGAGATTGTATGATTATTGCTATGTATCATTTATTATGTCACGGGAGTCCTTACCTACAACTTTTTACGTTGCTTCAGTTTATCATTTGTCTAGGTTGCTTTCAGGACAAAGGTTTTTCACCCAAACATTAACAGTAACGGTAGTATTTGCTTGGACATCTTGAAGGAGCAATGGAGTCCAGCTTTGACTATATCAAGGGTTTTGACTTCTCAATGACAATTTTAACATTCAACTCCTAGATGTTTGAATTTTATATATGTGCCTCTTTTACACGATGGCTTTGGTTCAAATTCTTTGAGTTGCCTGTTGATCAACATTTACAATTTTATTGCTTAACTAGGGAATCAAGGCACTAAGATGATATGCATAAAGAGAAAAAAAAAAAAAACCCATTATGTTGATATAATTTCGTTCATGGTACTCAGTCATACTGATGTAGTAATGTGATGGCAATTATACTTTAGTGTTCAACCCTCTGAACAGTTGTCACATTTCATGTCATCTTTATTTTATGACAATATTTCTCTAATTATAGTAATAGTCATCAATCCAAATTATAGTGAAGCCATCAGGACATAAAAAATTTAAATCCAAGAACGTGTTATGTGAAAACACTGCTAAGCAAACAACTTAGACCAACTGCTGAGAAAGTATTATTGCAACCATATATGGAGCATATAAAATGCACACATGTTGCTCTTGGGTGACAGCATGATATCCTGGTTAGATTTCATTTTTATGAAATTTTTACTGTAAACTTATGAGGGTTACTTATCATTTGAGTAGTGCAATGGGTATCAAGGGGTCACTGGCCAATGTTGACACAGGGACACCATGGTGTGTTTTCTGAGAAAGTCTATTGTCCTCCGCCAAAAATCCAGCCATTTTCTAATGATATATAGTGTAATGCAACTTATTCTAGAATATTGAATCGTTGTCTGCTCTTCAGCATCTTTGGCTAACATTATTGAGAATACATAGTGATTGTCAATCATTTTCTGCATATCCATTTCACTTTTTTCCTAGCTTCGATTAATTATTCAGTTTTTAAATGGTTGGGAAGGGTTTCTGTTTCATATTCAGGTGTTACTTTCTACTTGCTCCCTTTCGACAGATGCCAACCCAGATGATCTACTAGAGCCAGAAATTTCTCATCTATACAAGACCGATAGGGCCAAGAATGAGACAACTACAAGGAGCTGGACTAAAAAAATATGCGATGGGCTCGTTTGTATTATGGGAAGGGTACGAGGGATGTCACTGTTGGTTCTCATGTATAAATGAAAAGTTTCTGTACTATATACTATTATGAGTGATCTAAATAATTCTATGTCGTTCAATTTAAAATCAACATGATGCTTTAAGTTCATATTCGACTAATACATATCAATTATATGGATTTGATTTCGTACAGCTCCATGACCTGTGGATCTTAATCCTAGATTTCAAGCCAGTGAAGAAACTATCTCGCATCATGGCTTCTTATGGATGA

mRNA sequence

GCGTCCTTTGTTTCCCTGCATACCACATTTCGATTGTTTTCTTCCTCAGTTTTCTCGTCGGAGAGGCCTCTCTCGGCTACCGTCCATGGCGTCGAAACGGATCCTGAAGGAGCTCAATGATCTCCAGAAAGATCCTTCTACTTCCTGCAGCGGTGGTTGCTTTCAGGACAAAGGTTTTTCACCCAAACATTAACAGTAACGGTAGTATTTGCTTGGACATCTTGAAGGAGCAATGGAGTCCAGCTTTGACTATATCAAGGATGCCAACCCAGATGATCTACTAGAGCCAGAAATTTCTCATCTATACAAGACCGATAGGGCCAAGAATGAGACAACTACAAGGAGCTGGACTAAAAAAATATGCGATGGGCTCGTTTGTATTATGGGAAGGCTCCATGACCTGTGGATCTTAATCCTAGATTTCAAGCCAGTGAAGAAACTATCTCGCATCATGGCTTCTTATGGATGA

Coding sequence (CDS)

ATGGAGTCCAGCTTTGACTATATCAAGGATGCCAACCCAGATGATCTACTAGAGCCAGAAATTTCTCATCTATACAAGACCGATAGGGCCAAGAATGAGACAACTACAAGGAGCTGGACTAAAAAAATATGCGATGGGCTCGTTTGTATTATGGGAAGGCTCCATGACCTGTGGATCTTAATCCTAGATTTCAAGCCAGTGAAGAAACTATCTCGCATCATGGCTTCTTATGGATGA

Protein sequence

MESSFDYIKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDGLVCIMGRLHDLWILILDFKPVKKLSRIMASYG
Homology
BLAST of CmaCh00G003320 vs. ExPASy Swiss-Prot
Match: P35135 (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.8e-08
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 0

Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + D NPDD L PEI+H+YKTDRAK ETT RSWT+K   G
Sbjct: 110 LTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148

BLAST of CmaCh00G003320 vs. ExPASy Swiss-Prot
Match: Q94F47 (Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana OX=3702 GN=UBC28 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-07
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 0

Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + D NPDD L PEI+H+YKTDRAK E+T RSWT+K   G
Sbjct: 110 LTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148

BLAST of CmaCh00G003320 vs. ExPASy Swiss-Prot
Match: Q8S919 (Ubiquitin-conjugating enzyme E2 5B OS=Oryza sativa subsp. japonica OX=39947 GN=UBC5B PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-07
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 0

Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + D NPDD L PEI+H+YKTDRAK E+T RSWT+K   G
Sbjct: 110 LTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148

BLAST of CmaCh00G003320 vs. ExPASy Swiss-Prot
Match: P35134 (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana OX=3702 GN=UBC11 PE=1 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-07
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 0

Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + D NPDD L PEI+H+YKTDR+K E+T RSWT+K   G
Sbjct: 110 LTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148

BLAST of CmaCh00G003320 vs. ExPASy Swiss-Prot
Match: P15731 (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UBC4 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.2e-07
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 0

Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKK 43
           + DANPDD L PEI+H+YKTDR K E T R WTKK
Sbjct: 111 LTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKK 145

BLAST of CmaCh00G003320 vs. TAIR 10
Match: AT1G64230.1 (ubiquitin-conjugating enzyme 28 )

HSP 1 Score: 57.0 bits (136), Expect = 7.9e-09
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 0

Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + D NPDD L PEI+H+YKTDRAK E+T RSWT+K   G
Sbjct: 110 LTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148

BLAST of CmaCh00G003320 vs. TAIR 10
Match: AT1G64230.2 (ubiquitin-conjugating enzyme 28 )

HSP 1 Score: 57.0 bits (136), Expect = 7.9e-09
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 0

Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + D NPDD L PEI+H+YKTDRAK E+T RSWT+K   G
Sbjct: 110 LTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148

BLAST of CmaCh00G003320 vs. TAIR 10
Match: AT1G64230.3 (ubiquitin-conjugating enzyme 28 )

HSP 1 Score: 57.0 bits (136), Expect = 7.9e-09
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 0

Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + D NPDD L PEI+H+YKTDRAK E+T RSWT+K   G
Sbjct: 119 LTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 157

BLAST of CmaCh00G003320 vs. TAIR 10
Match: AT1G64230.4 (ubiquitin-conjugating enzyme 28 )

HSP 1 Score: 57.0 bits (136), Expect = 7.9e-09
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 0

Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + D NPDD L PEI+H+YKTDRAK E+T RSWT+K   G
Sbjct: 152 LTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 190

BLAST of CmaCh00G003320 vs. TAIR 10
Match: AT1G64230.5 (ubiquitin-conjugating enzyme 28 )

HSP 1 Score: 57.0 bits (136), Expect = 7.9e-09
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 0

Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + D NPDD L PEI+H+YKTDRAK E+T RSWT+K   G
Sbjct: 152 LTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 190

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P351353.8e-0866.67Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum OX=4081 PE=2 SV=1[more]
Q94F471.1e-0764.10Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana OX=3702 GN=UBC28 PE=1... [more]
Q8S9191.1e-0764.10Ubiquitin-conjugating enzyme E2 5B OS=Oryza sativa subsp. japonica OX=39947 GN=U... [more]
P351342.5e-0761.54Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana OX=3702 GN=UBC11 PE=1... [more]
P157313.2e-0768.57Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae (strain ATCC 20450... [more]
Match NameE-valueIdentityDescription
AT1G64230.17.9e-0964.10ubiquitin-conjugating enzyme 28 [more]
AT1G64230.27.9e-0964.10ubiquitin-conjugating enzyme 28 [more]
AT1G64230.37.9e-0964.10ubiquitin-conjugating enzyme 28 [more]
AT1G64230.47.9e-0964.10ubiquitin-conjugating enzyme 28 [more]
AT1G64230.57.9e-0964.10ubiquitin-conjugating enzyme 28 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016135Ubiquitin-conjugating enzyme/RWD-likeGENE3D3.10.110.10Ubiquitin Conjugating Enzymecoord: 2..45
e-value: 3.1E-5
score: 25.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G003320.1CmaCh00G003320.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000209 protein polyubiquitination
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0061631 ubiquitin conjugating enzyme activity