CmUC11G219840 (gene) Watermelon (USVL531) v1

Overview
NameCmUC11G219840
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionPhotosystem II 10 kDa polypeptide, chloroplastic
LocationCmU531Chr11: 28242816 .. 28247211 (+)
RNA-Seq ExpressionCmUC11G219840
SyntenyCmUC11G219840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACCTCCGTCATCGCTTCTTCTCTCACCCTCAAACCATCTAATTTCGCCGTCCAGAGATGCCGCCGTGATCTAATTCCTTCACTTGCAAGGACTTCTTCTTCCTTCAGAGTCGAGGCCAGCGGCGGCAAGAAAATCAAGACCGATAAACCTTACGGTTCGTATCTATTTGCGATTCGGTCGTTCGATTTCGGTTGACTGTTACAGTCGAGTAATTTCTTTGGCCGGATGTTTGACAGGAATCGGCGGCGGCATGAACTTGAGGAACGGCGTTGATGCGTCCGGGAGGAAGCCGACGGTGAGATTTCGAAACGCCGATCCTCTCTGTAGAATTTTCTTTTCTTAAATTGTAATTTGCTTACCTCTTTCCATGAAAGGTATCTGGATTTCATTGGAATCTTCTTCCCCATGCTTCTAAACTTCTTCACCTTAACACGATTTTGATTTTATTTCACGTCAAAAAAATTTTTTAAAAATAATTACATCTATCTATCTGTTCAACACACTAAATTCTCCGATAATTTTATGATTCATACCAAAATTTTCTTACTTTTTCTTCGATTATATTTTTATATATGTGATGAGTGTCTTGGGATGCACTACCTATTGTTCTAAAAGAATGAACTTATAGCTTGAAATCGGAAGATAAAAGACGACTAAGAAAACAACCAAAGAAAATATAATATCTAATGTGAAATACTAAATTCATCCAAATTCTTTTACTTTTTGATGAATTTTTTCCATTTTGAGATTTCAAATCCAAATTTTGGTTACACTTCGATGAAATCGTAGGAAATATTTTACTCTATGCTTTTAATCATTATCATGAGCCTTCTTTTGATGGACTTATGTGTGTTTTAGACCTTTTACATGGATGAATTTAAATTTTGCTATATTTAGCAATAGTTTTAGATTTTTCTAATTGTATTGTTAATTTGATCCATGAGCCCTAAAACAAAATTGTCCTCCACAGTACACCTTTATCTTTATGCATCACTTTTATCATAAACAAAAATAATTGTGATTGAACAATTTGATGAGATGCACTTAATTATTTTTCTTCCATAAAAGTTTTACTTTAATTTGTATTATTATTTTAAATATTGTCACATCAACATGGAGTTAAGTTAATGAAAAATATCCAAATGAGCATTTTTCGAAAGTATAATTGTTCCAATAGTTGTCTAACAATCTAACCAAACACAACTTTGATTTAGGGCAAAGGAGTGTACCAATATGTGGACAAGTACGGTGCCAATGTTGACGGATACAGGTGAAATCTACTATTCACTTTGGCAAATTATAACTCTTTAATTACCGATTTGTAATTTAACCATCTTATATGATGATGATGATAACAATAATTAAAACCCTTTAAAAAAAAAAAAAAAAAGTTAAAACCCTTTGTGTTAGCCCTCGTTTCTTCTTTCCATTAGTATGGAATAATTTTGCCAGCAAATAACATATTATATATTTATTATCTATTATGCTTTACCTTAGTGATTATTTGAATTTTGCAGTCCTATCTACAACACTGATGAATGGTCTCCAACCGGTGATGTATATGCTGGGGGTAACAAATTCTAACCAAAATTTCTTCGTTTATAAATTTCATCTCTATGATATAATTAATATTTAGTCCATAACCATAAAAAATAGTCCCTACAATAAGAACTACGTGTGAGAATTTTATCTAATTATAAAGATTGTTTGTGAAATTGTATCAAACTATAAAGACTAAACTCTAACTTACTCAAACTGCAAGGGGCCAAATTTGTAATTTAAGGTAAGGAATGTGAATTTACCCATTTATGGGCTGAGATGAATAATATTGAACTGCAGGTATAACTGGGCTGGCTATTTGGGCCGTGACCCTTCTGGGCCTGCTTGCTGGTGGGGCCCTTTTAGTCTACAACACAAGTGCTCTGGCCCAGTAATCTCATCTAGCCCATTTCTGTTTCTTCCAATTGGAACCTGATTTTATTTTAATATACTCTTATTATGTTCTACGAATAAATTGATAGTACTTTTCAGACTGTACTTTGTGTTCATCATTTCCTATCGTACTTGGTATAAGCAAAAATTACCAATATTAATTTAGCCTTTAGGTAATTTTTGTCTATGGGTACTTTTAACTTCGGATTTGGTTCAGTTTTGGTTCATTTTATTAATTTGCTTTCAAAGCGAATTTGATCCTAATAATTTCAAGATATTCATTATTATTCATTTCCGTCCTTAAAATTTAAGAATGTCCAACTTAGTTCCTTCTTCTTCTTCATTTTTTTTTTTTAAATAAATTCTAGTTTTCCTATCATATAGCACTTCAATTTCTTAAAATGTAGCCAAACTTAAAAACTTTTTCATTGCGTATAATGTTCTTGCTTGAACTTTACAAACAAGGACCATATTGTTCACTAATTAACCATATAAAGATCAAAATGACCAAAAGCACCAAAATTGTATTTAAGCCTAAAAAAATGTATTGAAAGCATTCAACTTACTCTTCTTTTAAGTCCGATGATGCCATTTTCGTTTAGGTAAGAAATTTTGAAGTTCAAATTTCTAGAGGATACCTTTCATTTTCAATGAAGTCCACATGCAGCTTAATGCAAACATCGCAAGATTATGAGGATCCAACAAGTTAAAAAATTCTCAATTTGCATGCAATTGAAGGTCATTAGGACATTTGATGGCCACTAATAGCTGCTGCAGAGCAAGAGGTATCAGTAGATAGGCTAAAAATTTCATGCACATTGTTCTCTTTAAGAACACTTCAACAATCTTATAGAGAATAATGAACACCAAAGCAACCGATCACAAACCATTTCGAATGAAATAAAACATGGGGAATATTCTTTTCTGGAAATTTTCCGAAGACTAGTAAACAGTAAGAGTAGGAGTGGAGTTAGTGGAGTTATTAACACCTCTTTTTTTGGCGCAAGAAATTTCTAAGCACATTGTGTGCCCCAACTAAAAAACATCAATTATACAACTTATTAACTTCTTCCATTGGACTCCAAAGCAAAATTTCATAGACTTAACAACTCCACCCCTCCCCCAAACTCAAAAGCTCAAGTTCACCATCCAAACATAATTTTTTTTTATGTTTAAAAACACAACATTATTTTAAGAAGTTGACAATCTCAAGTTCACTAAGGAAGGCAGGACCAATCAATAACTGTTTCAAGGACTTCTAAAAACACCCAAAACCACCCTCTACAAAAATCTTTAACAAAATGTGTCTTTGAAAGTTCTACTTGGATGAAGTATGTCCTCCAAGACACTTGGCTATGAAAGGAAATAAAAATGAACCTAGTTCTTTCATCCTAACCAAAATGATTTAAAAATTCAAGACATAGTCTAATAACTACCCATACTTTGACCCCTTTTTTTTCTATTTTTAAAAGTTAAGCTTATAAATACTACATTCACCACTTCAATTTTTTTAAAAATTATTACAATCCACATCCTACCAATATTTTAAGAAACAACGCAAGAATTGAAAACTAGAAAATTTAATTCCCATCTGGTTTTAAAAATGTATTTGTTTTCTTACAACTCCTTTACCATGATTTCCATTTTTTCTAACCAAACAGTTAGAGAATTTTTTGCCAAGTTTCTAAAAGCTACCTTTTCTTAGTTTTCAAAATTTGGATTGATGTTAAAAATATTGATTAAAAAATGTTTATATATATATATATATATATATATATATATATATATAGTTTAAAACAATAAATAAATAAATAATAAAAAATCCCTTATTGGTGTAAGTAATGTTTAGATTAAATTACAAATTTGGTCCCTATGATTTGGAGATAGTTAAAATTTTGTCCCTATGAGGGTTTTTTTTATCACCGTAGGAACTAAATTTTAACTTTCTCCAAACCATAGAGACAATTTTGCAATTCAACCTTGTGTTTTATAAACTTAACTTTCAAAAACCAAATAGTTAACCGACAAAGCTTAAGAAAATAAAGAACAAAATTGTTACCAAATTAAACCGAACTACTAACCCTTCTTGTGCAACTAATACGGAAGGTTTAAGACAAGAAACCATATCTGCTTGAATTCCATCATCCTCCTATAATAAAATGCACCTGGGAGCTGGCTGGATGGCAAGCAATCATTATATAATGTTATACACCAAGTACAAATGTGAATATGATACCTGATGAGTTGCAGTAAAAATTACACCTGTAACTTCAGACCAACTTCTCAAGATTTGGTTTCAAATTATACCAGCTTAGCGAGACCGAAGGACTTCAATGATTTCAAGGATGATCCAAAACGTTGTCTTCAGAGATCGGAAGCAAAGAAGCCAGTTCTTACTGTCTTCATCACATCTAGCTCGCGCCTAACTAACGAAAAAGGCGGAATTGTTTGCTTCTAA

mRNA sequence

ATGGCAACCTCCGTCATCGCTTCTTCTCTCACCCTCAAACCATCTAATTTCGCCGTCCAGAGATGCCGCCGTGATCTAATTCCTTCACTTGCAAGGACTTCTTCTTCCTTCAGAGTCGAGGCCAGCGGCGGCAAGAAAATCAAGACCGATAAACCTTACGGAATCGGCGGCGGCATGAACTTGAGGAACGGCGTTGATGCGTCCGGGAGGAAGCCGACGGGCAAAGGAGTGTACCAATATGTGGACAAGTACGGTGCCAATGTTGACGGATACAGTCCTATCTACAACACTGATGAATGGTCTCCAACCGGTGATGTATATGCTGGGGGTATAACTGGGCTGGCTATTTGGGCCGTGACCCTTCTGGGCCTGCTTGCTGGTGGGGCCCTTTTAGTCTACAACACAAGTGCTCTGGCCCACTTAGCGAGACCGAAGGACTTCAATGATTTCAAGGATGATCCAAAACGTTGTCTTCAGAGATCGGAAGCAAAGAAGCCAGTTCTTACTGTCTTCATCACATCTAGCTCGCGCCTAACTAACGAAAAAGGCGGAATTGTTTGCTTCTAA

Coding sequence (CDS)

ATGGCAACCTCCGTCATCGCTTCTTCTCTCACCCTCAAACCATCTAATTTCGCCGTCCAGAGATGCCGCCGTGATCTAATTCCTTCACTTGCAAGGACTTCTTCTTCCTTCAGAGTCGAGGCCAGCGGCGGCAAGAAAATCAAGACCGATAAACCTTACGGAATCGGCGGCGGCATGAACTTGAGGAACGGCGTTGATGCGTCCGGGAGGAAGCCGACGGGCAAAGGAGTGTACCAATATGTGGACAAGTACGGTGCCAATGTTGACGGATACAGTCCTATCTACAACACTGATGAATGGTCTCCAACCGGTGATGTATATGCTGGGGGTATAACTGGGCTGGCTATTTGGGCCGTGACCCTTCTGGGCCTGCTTGCTGGTGGGGCCCTTTTAGTCTACAACACAAGTGCTCTGGCCCACTTAGCGAGACCGAAGGACTTCAATGATTTCAAGGATGATCCAAAACGTTGTCTTCAGAGATCGGAAGCAAAGAAGCCAGTTCTTACTGTCTTCATCACATCTAGCTCGCGCCTAACTAACGAAAAAGGCGGAATTGTTTGCTTCTAA

Protein sequence

MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGITGLAIWAVTLLGLLAGGALLVYNTSALAHLARPKDFNDFKDDPKRCLQRSEAKKPVLTVFITSSSRLTNEKGGIVCF
Homology
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BLAST of CmUC11G219840 vs. NCBI nr
Match: XP_038899014.1 (photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 245.0 bits (624), Expect = 5.3e-61
Identity = 130/145 (89.66%), Postives = 133/145 (91.72%), Query Frame = 0 

Query: 1   MATSVI-ASSLTLKPSNFAVQRCRRDL-----IPSLARTSSSFRVEASGGKKIKTDKPYG 60
           MA SV+ ASSL+LKPSNFAVQR   DL     IPSLARTSSSF+VEASGGKKIKTDKPYG
Sbjct: 1   MAISVVAASSLSLKPSNFAVQRSAADLRRHVPIPSLARTSSSFKVEASGGKKIKTDKPYG 60

Query: 61  IGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGITGL 120
           IGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYA G TGL
Sbjct: 61  IGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAAGTTGL 120

Query: 121 AIWAVTLLGLLAGGALLVYNTSALA 140
           AIWAVTLLGLLAGGALLVYNTSALA
Sbjct: 121 AIWAVTLLGLLAGGALLVYNTSALA 145

[Close]
BLAST of CmUC11G219840 vs. NCBI nr
Match: NP_001295724.1 (photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas] >ADB93062.1 chloroplast photosystem II 10 kDa polypeptide [Jatropha curcas] >KDP43406.1 hypothetical protein JCGZ_26561 [Jatropha curcas])

HSP 1 Score: 218.8 bits (556), Expect = 4.0e-53
Identity = 114/139 (82.01%), Postives = 125/139 (89.93%), Query Frame = 0 

Query: 1   MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMN 60
           MATSV+A S++LKPS F+VQ+     +P L+R   +F+VEA GGKKIKTDKPYGIGGGMN
Sbjct: 1   MATSVMA-SVSLKPSPFSVQKSSVRGLPKLSR--RAFKVEAGGGKKIKTDKPYGIGGGMN 60

Query: 61  LRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGITGLAIWAVT 120
           LRNG+DASGRK TGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGG TGLAIWAVT
Sbjct: 61  LRNGLDASGRKATGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGTTGLAIWAVT 120

Query: 121 LLGLLAGGALLVYNTSALA 140
           LLG+LAGGALLVYNTSALA
Sbjct: 121 LLGILAGGALLVYNTSALA 136

[Close]
BLAST of CmUC11G219840 vs. NCBI nr
Match: VVA34501.1 (PREDICTED: photosystem II [Prunus dulcis])

HSP 1 Score: 217.6 bits (553), Expect = 9.0e-53
Identity = 111/139 (79.86%), Postives = 125/139 (89.93%), Query Frame = 0 

Query: 1   MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMN 60
           MA SV+A S++LKPS F V++     +PSLARTSSSF+V+ASGGKKIKTD PYG GGGMN
Sbjct: 36  MAASVMA-SVSLKPSPFTVEKSAVRGLPSLARTSSSFKVQASGGKKIKTDTPYGTGGGMN 95

Query: 61  LRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGITGLAIWAVT 120
           L++G DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEWSP+GDVYAGG TGLAIWAVT
Sbjct: 96  LKDGKDASGRKPTGKGVYQFVDKYGANVDGYSPIYNRDEWSPSGDVYAGGATGLAIWAVT 155

Query: 121 LLGLLAGGALLVYNTSALA 140
           LLG+LAGGALLVYNTSAL+
Sbjct: 156 LLGILAGGALLVYNTSALS 173

[Close]
BLAST of CmUC11G219840 vs. NCBI nr
Match: CAB4277098.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 217.6 bits (553), Expect = 9.0e-53
Identity = 111/139 (79.86%), Postives = 125/139 (89.93%), Query Frame = 0 

Query: 1   MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMN 60
           MA SV+A S++LKPS F V++     +PSLARTSSSF+V+ASGGKKIKTD PYG GGGMN
Sbjct: 1   MAASVMA-SVSLKPSPFTVEKSAVRGLPSLARTSSSFKVQASGGKKIKTDTPYGTGGGMN 60

Query: 61  LRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGITGLAIWAVT 120
           L++G DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEWSP+GDVYAGG TGLAIWAVT
Sbjct: 61  LKDGKDASGRKPTGKGVYQFVDKYGANVDGYSPIYNRDEWSPSGDVYAGGTTGLAIWAVT 120

Query: 121 LLGLLAGGALLVYNTSALA 140
           LLG+LAGGALLVYNTSAL+
Sbjct: 121 LLGILAGGALLVYNTSALS 138

[Close]
BLAST of CmUC11G219840 vs. NCBI nr
Match: XP_007212214.1 (photosystem II 10 kDa polypeptide, chloroplastic [Prunus persica] >XP_034212001.1 photosystem II 10 kDa polypeptide, chloroplastic [Prunus dulcis] >ONI12091.1 hypothetical protein PRUPE_4G143700 [Prunus persica])

HSP 1 Score: 217.6 bits (553), Expect = 9.0e-53
Identity = 111/139 (79.86%), Postives = 125/139 (89.93%), Query Frame = 0 

Query: 1   MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMN 60
           MA SV+A S++LKPS F V++     +PSLARTSSSF+V+ASGGKKIKTD PYG GGGMN
Sbjct: 1   MAASVMA-SVSLKPSPFTVEKSAVRGLPSLARTSSSFKVQASGGKKIKTDTPYGTGGGMN 60

Query: 61  LRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGITGLAIWAVT 120
           L++G DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEWSP+GDVYAGG TGLAIWAVT
Sbjct: 61  LKDGKDASGRKPTGKGVYQFVDKYGANVDGYSPIYNRDEWSPSGDVYAGGATGLAIWAVT 120

Query: 121 LLGLLAGGALLVYNTSALA 140
           LLG+LAGGALLVYNTSAL+
Sbjct: 121 LLGILAGGALLVYNTSALS 138

[Close]
BLAST of CmUC11G219840 vs. ExPASy Swiss-Prot
Match: P06183 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum OX=4113 GN=PSBR PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.6e-52
Identity = 105/136 (77.21%), Postives = 119/136 (87.50%), Query Frame = 0 

Query: 4   SVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRN 63
           S + SSL+LKP+ F +++     +PSLAR+SSSF+V ASG KK+KTDKPYGI G M LR+
Sbjct: 3   STVMSSLSLKPT-FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRD 62

Query: 64  GVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGITGLAIWAVTLLG 123
           GVDASGRKP GKGVYQYVDKYGANVDGYSPIYNTDEWSP+GDVY GG TGLAIWAVTL+G
Sbjct: 63  GVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVG 122

Query: 124 LLAGGALLVYNTSALA 140
           +LAGGALLVYNTSALA
Sbjct: 123 ILAGGALLVYNTSALA 137

[Close]
BLAST of CmUC11G219840 vs. ExPASy Swiss-Prot
Match: Q40163 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PSBR PE=2 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 4.6e-52
Identity = 105/136 (77.21%), Postives = 118/136 (86.76%), Query Frame = 0 

Query: 4   SVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRN 63
           S + SSL+LKP+ F +++     +PSL R+SSSF+V ASG KK+KTDKPYGI G M LR+
Sbjct: 3   STVMSSLSLKPT-FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRD 62

Query: 64  GVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGITGLAIWAVTLLG 123
           GVDASGRKP GKGVYQYVDKYGANVDGYSPIYNTDEWSP+GDVY GG TGLAIWAVTLLG
Sbjct: 63  GVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLG 122

Query: 124 LLAGGALLVYNTSALA 140
           +LAGGALLVYNTSALA
Sbjct: 123 ILAGGALLVYNTSALA 137

[Close]
BLAST of CmUC11G219840 vs. ExPASy Swiss-Prot
Match: P10690 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBR PE=2 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-51
Identity = 108/140 (77.14%), Postives = 121/140 (86.43%), Query Frame = 0 

Query: 1   MATSVIASSLTLKPSNFAVQ-RCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGM 60
           MATSV+ SSL+LKPS+F V  +     +PSL+R+S+SF V ASG KKIK DKP GIGGGM
Sbjct: 1   MATSVM-SSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGM 60

Query: 61  NLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGITGLAIWAV 120
            LR+GVD+SGRKPTGKGVYQ+VDKYGANVDGYSPIYN +EW+PTGDVYAGG TGL IWAV
Sbjct: 61  KLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAV 120

Query: 121 TLLGLLAGGALLVYNTSALA 140
           TL GLLAGGALLVYNTSALA
Sbjct: 121 TLAGLLAGGALLVYNTSALA 139

[Close]
BLAST of CmUC11G219840 vs. ExPASy Swiss-Prot
Match: Q40519 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum OX=4097 GN=PSBR PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.1e-51
Identity = 99/130 (76.15%), Postives = 117/130 (90.00%), Query Frame = 0 

Query: 10  LTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMNLRNGVDASG 69
           ++LKP+ F+V++     +PSLAR+SSSFRV+ASG KK+KTDKPYGI G M+LR+GVDASG
Sbjct: 6   MSLKPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASG 65

Query: 70  RKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGITGLAIWAVTLLGLLAGGA 129
           RK  GKGVYQ+VDKYGANVDGYSPIYNTD+WSP+GDVY GG TGLAIWAVTL+G+LAGGA
Sbjct: 66  RKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGA 125

Query: 130 LLVYNTSALA 140
           LLV+NTSALA
Sbjct: 126 LLVFNTSALA 135

[Close]
BLAST of CmUC11G219840 vs. ExPASy Swiss-Prot
Match: P49108 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris OX=3711 GN=PSBR PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.8e-49
Identity = 101/140 (72.14%), Postives = 117/140 (83.57%), Query Frame = 0 

Query: 1   MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTS-SSFRVEASGGKKIKTDKPYGIGGGM 60
           MA SV+ SS+TLKP+ F V++     +PSL R S SSFR+ ASG KKIKTDKP+G+ G M
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSM 60

Query: 61  NLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGITGLAIWAV 120
           +LR+GVDASGRK  G GVY++VDKYGANVDGYSPIYN DEWS +GDVY GG+TGLAIWAV
Sbjct: 61  DLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAV 120

Query: 121 TLLGLLAGGALLVYNTSALA 140
           TL G+LAGGALLVYNTSALA
Sbjct: 121 TLAGILAGGALLVYNTSALA 140

[Close]
BLAST of CmUC11G219840 vs. ExPASy TrEMBL
Match: D6BRD6 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Jatropha curcas OX=180498 GN=JCGZ_26561 PE=2 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 2.0e-53
Identity = 114/139 (82.01%), Postives = 125/139 (89.93%), Query Frame = 0 

Query: 1   MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMN 60
           MATSV+A S++LKPS F+VQ+     +P L+R   +F+VEA GGKKIKTDKPYGIGGGMN
Sbjct: 1   MATSVMA-SVSLKPSPFSVQKSSVRGLPKLSR--RAFKVEAGGGKKIKTDKPYGIGGGMN 60

Query: 61  LRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGITGLAIWAVT 120
           LRNG+DASGRK TGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGG TGLAIWAVT
Sbjct: 61  LRNGLDASGRKATGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGTTGLAIWAVT 120

Query: 121 LLGLLAGGALLVYNTSALA 140
           LLG+LAGGALLVYNTSALA
Sbjct: 121 LLGILAGGALLVYNTSALA 136

[Close]
BLAST of CmUC11G219840 vs. ExPASy TrEMBL
Match: M5WVP2 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Prunus persica OX=3760 GN=PRUPE_4G143700 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 4.4e-53
Identity = 111/139 (79.86%), Postives = 125/139 (89.93%), Query Frame = 0 

Query: 1   MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMN 60
           MA SV+A S++LKPS F V++     +PSLARTSSSF+V+ASGGKKIKTD PYG GGGMN
Sbjct: 1   MAASVMA-SVSLKPSPFTVEKSAVRGLPSLARTSSSFKVQASGGKKIKTDTPYGTGGGMN 60

Query: 61  LRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGITGLAIWAVT 120
           L++G DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEWSP+GDVYAGG TGLAIWAVT
Sbjct: 61  LKDGKDASGRKPTGKGVYQFVDKYGANVDGYSPIYNRDEWSPSGDVYAGGATGLAIWAVT 120

Query: 121 LLGLLAGGALLVYNTSALA 140
           LLG+LAGGALLVYNTSAL+
Sbjct: 121 LLGILAGGALLVYNTSALS 138

[Close]
BLAST of CmUC11G219840 vs. ExPASy TrEMBL
Match: A0A5E4G3Z3 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Prunus dulcis OX=3755 GN=ALMOND_2B031350 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 4.4e-53
Identity = 111/139 (79.86%), Postives = 125/139 (89.93%), Query Frame = 0 

Query: 1   MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMN 60
           MA SV+A S++LKPS F V++     +PSLARTSSSF+V+ASGGKKIKTD PYG GGGMN
Sbjct: 36  MAASVMA-SVSLKPSPFTVEKSAVRGLPSLARTSSSFKVQASGGKKIKTDTPYGTGGGMN 95

Query: 61  LRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGITGLAIWAVT 120
           L++G DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEWSP+GDVYAGG TGLAIWAVT
Sbjct: 96  LKDGKDASGRKPTGKGVYQFVDKYGANVDGYSPIYNRDEWSPSGDVYAGGATGLAIWAVT 155

Query: 121 LLGLLAGGALLVYNTSALA 140
           LLG+LAGGALLVYNTSAL+
Sbjct: 156 LLGILAGGALLVYNTSALS 173

[Close]
BLAST of CmUC11G219840 vs. ExPASy TrEMBL
Match: A0A6J5USX5 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS26567 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 4.4e-53
Identity = 111/139 (79.86%), Postives = 125/139 (89.93%), Query Frame = 0 

Query: 1   MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMN 60
           MA SV+A S++LKPS F V++     +PSLARTSSSF+V+ASGGKKIKTD PYG GGGMN
Sbjct: 1   MAASVMA-SVSLKPSPFTVEKSAVRGLPSLARTSSSFKVQASGGKKIKTDTPYGTGGGMN 60

Query: 61  LRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGITGLAIWAVT 120
           L++G DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEWSP+GDVYAGG TGLAIWAVT
Sbjct: 61  LKDGKDASGRKPTGKGVYQFVDKYGANVDGYSPIYNRDEWSPSGDVYAGGTTGLAIWAVT 120

Query: 121 LLGLLAGGALLVYNTSALA 140
           LLG+LAGGALLVYNTSAL+
Sbjct: 121 LLGILAGGALLVYNTSALS 138

[Close]
BLAST of CmUC11G219840 vs. ExPASy TrEMBL
Match: I3SHR8 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.3e-52
Identity = 110/139 (79.14%), Postives = 126/139 (90.65%), Query Frame = 0 

Query: 1   MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMN 60
           MA+SV+A S++LKP+ F++++     +PSL+R+S+SFRV ASGGKKIKTD PYG GGGMN
Sbjct: 1   MASSVMA-SVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMN 60

Query: 61  LRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGITGLAIWAVT 120
           LRNGVDASGRKP GKGVYQYVDKYGANVDGYSPIY+T +WSPTGDVYAGG TGLAIWAVT
Sbjct: 61  LRNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVT 120

Query: 121 LLGLLAGGALLVYNTSALA 140
           LLGLLAGGALLVYNTSAL+
Sbjct: 121 LLGLLAGGALLVYNTSALS 138

[Close]
BLAST of CmUC11G219840 vs. TAIR 10
Match: AT1G79040.1 (photosystem II subunit R )

HSP 1 Score: 196.1 bits (497), Expect = 2.6e-50
Identity = 99/139 (71.22%), Postives = 115/139 (82.73%), Query Frame = 0 

Query: 1   MATSVIASSLTLKPSNFAVQRCRRDLIPSLARTSSSFRVEASGGKKIKTDKPYGIGGGMN 60
           MA SV+ SS+TLKP+ F V++     +PSL R   SF++ ASG KKIKTDKP+GI G M+
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMD 60

Query: 61  LRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGITGLAIWAVT 120
           LR+GVDASGRK  G GVY+YVDKYGANVDGYSPIYN +EWS +GDVY GG+TGLAIWAVT
Sbjct: 61  LRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120

Query: 121 LLGLLAGGALLVYNTSALA 140
           L G+LAGGALLVYNTSALA
Sbjct: 121 LAGILAGGALLVYNTSALA 139

The following BLAST results are available for this feature:
BLAST of CmUC11G219840 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038899014.15.3e-6189.66photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida][more]
NP_001295724.14.0e-5382.01photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas] >ADB93062.1 c... [more]
VVA34501.19.0e-5379.86PREDICTED: photosystem II [Prunus dulcis][more]
CAB4277098.19.0e-5379.86unnamed protein product [Prunus armeniaca][more]
XP_007212214.19.0e-5379.86photosystem II 10 kDa polypeptide, chloroplastic [Prunus persica] >XP_034212001.... [more]
BLAST of CmUC11G219840 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P061833.6e-5277.21Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum OX=4113 GN... [more]
Q401634.6e-5277.21Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum OX=4081... [more]
P106901.4e-5177.14Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea OX=3562 GN... [more]
Q405195.1e-5176.15Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum OX=4097 GN... [more]
P491082.8e-4972.14Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris OX=3711 ... [more]
BLAST of CmUC11G219840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
D6BRD62.0e-5382.01Photosystem II 10 kDa polypeptide, chloroplastic OS=Jatropha curcas OX=180498 GN... [more]
M5WVP24.4e-5379.86Photosystem II 10 kDa polypeptide, chloroplastic OS=Prunus persica OX=3760 GN=PR... [more]
A0A5E4G3Z34.4e-5379.86Photosystem II 10 kDa polypeptide, chloroplastic OS=Prunus dulcis OX=3755 GN=ALM... [more]
A0A6J5USX54.4e-5379.86Photosystem II 10 kDa polypeptide, chloroplastic OS=Prunus armeniaca OX=36596 GN... [more]
I3SHR81.3e-5279.14Photosystem II 10 kDa polypeptide, chloroplastic OS=Lotus japonicus OX=34305 PE=... [more]
BLAST of CmUC11G219840 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G79040.12.6e-5071.22photosystem II subunit R [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006814Photosystem II PsbRPFAMPF04725PsbRcoord: 42..139
e-value: 3.7E-49
score: 165.1
IPR006814Photosystem II PsbRPANTHERPTHR34369PHOTOSYSTEM II 10 KDA POLYPEPTIDE, CHLOROPLASTICcoord: 1..140
NoneNo IPR availablePANTHERPTHR34369:SF7OS07G0147550 PROTEINcoord: 1..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC11G219840.1CmUC11G219840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0009523 photosystem II
cellular_component GO:0042651 thylakoid membrane