CmUC11G213420 (gene) Watermelon (USVL531) v1

Overview
NameCmUC11G213420
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionCCHC-type domain-containing protein
LocationCmU531Chr11: 15026248 .. 15028603 (-)
RNA-Seq ExpressionCmUC11G213420
SyntenyCmUC11G213420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAATCCATACCTCGGTTTTTCGTTAAAGATTTCGGCAATACCTGGTGTGTTGTTAAAGATTTTGACGACAAGGTTGCTCTTCATTCAGGAACAACCTAAGGTAGTCAAGACAACCAGAGTAGTGATGAGTTCTAAAAGGTTTGCAATATGGAGGTATTCTGAAGGATTCAATGGGGTATTGGAAGGTTTGAGATGAAAGGTGGGTGGTGGGAGAGTTTGTGTTGAATATGGAAGGTTGAAGATCGGAGGGTGGTGTGGTGTATTGAAGGCTTTCTTCATATAATTTAATCATCTTTTTAATTCAATAGGTAGAATTTAATTTGATTGGGATAATTAGAGGTTAGATTTAAAAATTTGAAGATTGGAATAATCCAATTTAAGGGGAATGGGTAGTTAAATTGGGATCTGATGTAATGGAAGATAATTATTAGAATATTATATATATATATATATGGGCTAAATACATTTTTGGTCCCTGAGATTTCAAAACACTTTAGTTCCCAAAGTTTGCAAAATGATTCTAAAGGATCCCGGCTTAACTTTAAACTAACGGAATGCTAACTGGACCGTTAAGTATTGACGTGGATGAGATGACAAGGCTACTTTATTTAACTACATGGTAAAATCTATTTGATTGGTTGGACCATAAATTGAAATTTTAATTTTTTAAAAAATAAACTAATAAGTGAAAATTAAAATTGTTTAAATTATATTAAAAGAATCTAAACCAAACCTAAATTAGATTTTTTTCCAAAGATTTTCTCTTCCTTCTTCTACGTTTTTTCTTTGTCAAAATATGAATCGTTAGTGTGGTCGACTCCACCCAGTTGCTGTCGAGTTCGCCAGCCACAGTTGATCCCTCCGTTTACAAACATTCTGTTCCCCACAATAAGGTATTTTTCTCCAATTTCTATTCCCCACAAGAAAATTTTTAAGAGCAACAATTTGACTTGGTAAATGATAACTTCCCTTTAGAGAAGAATATTTATTATAAAGGATTTGTGGTCAATGAAATTTAGAAAATTTTCAAGAGCAACAATTTGACTTGCTAAATGATAACTTTAGTTTTGGGAAGAATATTTATTATAAAGGATTTGTGGTCGATGAAATCTAGAAAATTTTCAAGAACAACAATTTGACTTGCTAAATGATAACTTAGAGGAGGCAATTTATTATAAAGGCTTTGTGGTCAATGAAATTTTCTTTCTTACAGAAAGCAATAAGGTTTCAAAATACGAAACTTTTTTCCTTCTTCCTTCTTGTTCTTCCAAATATCAAATGTATTATTTTTTAAAATATTATTTATCATTGTCTTCTTCCACAATGTATTTTGCATCACTAGCTTCTTCCACAATGTATTTTTTAATATAAAAGCAGACCATATGAAATTAATTCGGTAAGTAATAGAGTGGTCAATTTGTTGTGTAACACTCACAAAACTACAACAACATCCACACTGCAAGATTTTCAAAATTATTCATATCTTTTCTAACCTTTTGTCTGAATTATATTCAATTTAATCGTATAGTTTTTCTTGTGGTATTGGAGTATGTGATTGGTTTTTAGTGGCAATTATAACAATCGTAGTATGTGATTATTTAGTTCTAAAAGTGCTACAATCTTTTAAAATTTTATTAGCAGAATGGATAGCATAGATCTCATATTCCATTTCAATGGTCGACTTGTTATAGTAGATAGTTATGAGTATGTCGGAGGGACTGAGATTGCTTTGATTGTTGATAGAGACACGTTATCTATAATTGAGTTAAATACACTGAAGTCAGAAGGAAATGTATTTAATGTTCAGTGCTATTGGCATTTGGAACCCAGTTTAGAACTATCTCTTGGTTTACATTTAATTAGTCATGATGGAGACATTTTAATTATGGTAAACCTTGTTAATTGAGATAACACTTTGCACATATATGTTCAACATAACCCAAATGAAGGAGCAATGCATCTAAGTTTGAGTTTGGGCCACACATCTAGTGATAGCTTTTAAGTTTGAAAAGAATGATATAGTTTTAGATGGGTCAAACGATTCATCTATTGATATGAATTTATTGTTGATTTAGACCTTGGAGATCAATGTGAGTCCGCTTATGCTTCATCTTCCAATTTATATTCTCCATATCCATCTAATGAGGATAAAAGAGGTCTGTAGCTATCCGATATTTAGGCATGAGATTGATATGCAGGTCGTCGCATTCCATGTAGGAATGAAGTTTAGCACTAAGGAGGTGTTAAAGGAAGCTATTAAGGAATACGTTGTGAAGGGCTCGTATAATGTGAAAATGGTGACAAATGATAAAAGACGAGTTAGGGCTATCCGTACTAGTGGATGTAAATAG

mRNA sequence

ATGAAAAATCCATACCTCGGTTTTTCGTTAAAGATTTCGGCAATACCTGGTGTGTTGTTAAAGATTTTGACGACAAGGTTGCTCTTCATTCAGGAACAACCTAAGGTAGTCAAGACAACCAGAGTAGTGATGAGTTCTAAAAGGTTTGCAATATGGAGGTATTCTGAAGGATTCAATGGGGTATTGGAAGTGTGGTCGACTCCACCCAGTTGCTGTCGAGTTCGCCAGCCACAGTTGATCCCTCCGTTTACAAACATTCTGTTCCCCACAATAAGAATGGATAGCATAGATCTCATATTCCATTTCAATGGTCGACTTGTTATAGTAGATAGTTATGAGTATGTCGGAGGGACTGAGATTGCTTTGATTGTTGATAGAGACACGTTATCTATAATTGAGTTAAATACACTGAAGTCAGAAGGAAATGTATTTAATGTTCAGTGCTATTGGCATTTGGAACCCAGTTTAGAACTATCTCTTGGTTTACATTTAATTAGTCATGATGGAGACATTTTAATTATGACCTTGGAGATCAATGTGAGTCCGCTTATGCTTCATCTTCCAATTTATATTCTCCATATCCATCTAATGAGGATAAAAGAGGTCTGTAGCTATCCGATATTTAGGCATGAGATTGATATGCAGGTCGTCGCATTCCATGTAGGAATGAAGTTTAGCACTAAGGAGGTGTTAAAGGAAGCTATTAAGGAATACGTTGTGAAGGGCTCGTATAATGTGAAAATGGTGACAAATGATAAAAGACGAGTTAGGGCTATCCGTACTAGTGGATGTAAATAG

Coding sequence (CDS)

ATGAAAAATCCATACCTCGGTTTTTCGTTAAAGATTTCGGCAATACCTGGTGTGTTGTTAAAGATTTTGACGACAAGGTTGCTCTTCATTCAGGAACAACCTAAGGTAGTCAAGACAACCAGAGTAGTGATGAGTTCTAAAAGGTTTGCAATATGGAGGTATTCTGAAGGATTCAATGGGGTATTGGAAGTGTGGTCGACTCCACCCAGTTGCTGTCGAGTTCGCCAGCCACAGTTGATCCCTCCGTTTACAAACATTCTGTTCCCCACAATAAGAATGGATAGCATAGATCTCATATTCCATTTCAATGGTCGACTTGTTATAGTAGATAGTTATGAGTATGTCGGAGGGACTGAGATTGCTTTGATTGTTGATAGAGACACGTTATCTATAATTGAGTTAAATACACTGAAGTCAGAAGGAAATGTATTTAATGTTCAGTGCTATTGGCATTTGGAACCCAGTTTAGAACTATCTCTTGGTTTACATTTAATTAGTCATGATGGAGACATTTTAATTATGACCTTGGAGATCAATGTGAGTCCGCTTATGCTTCATCTTCCAATTTATATTCTCCATATCCATCTAATGAGGATAAAAGAGGTCTGTAGCTATCCGATATTTAGGCATGAGATTGATATGCAGGTCGTCGCATTCCATGTAGGAATGAAGTTTAGCACTAAGGAGGTGTTAAAGGAAGCTATTAAGGAATACGTTGTGAAGGGCTCGTATAATGTGAAAATGGTGACAAATGATAAAAGACGAGTTAGGGCTATCCGTACTAGTGGATGTAAATAG

Protein sequence

MKNPYLGFSLKISAIPGVLLKILTTRLLFIQEQPKVVKTTRVVMSSKRFAIWRYSEGFNGVLEVWSTPPSCCRVRQPQLIPPFTNILFPTIRMDSIDLIFHFNGRLVIVDSYEYVGGTEIALIVDRDTLSIIELNTLKSEGNVFNVQCYWHLEPSLELSLGLHLISHDGDILIMTLEINVSPLMLHLPIYILHIHLMRIKEVCSYPIFRHEIDMQVVAFHVGMKFSTKEVLKEAIKEYVVKGSYNVKMVTNDKRRVRAIRTSGCK
Homology
[Close]
BLAST of CmUC11G213420 vs. NCBI nr
Match: XP_020080379.1 (uncharacterized protein LOC109704055 [Ananas comosus])

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-05
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 205 YPIFRHEIDMQVVAFHVGMKFSTKEVLKEAIKEYVVKGSYNVKMVTNDKRRVRAIRTSGC 264
           YP FR E DMQ   F +GM F++ +  ++AI+EY +K  YN+K+V N+K +VRA+   GC
Sbjct: 305 YPEFRAETDMQNPQFGIGMLFASMKEFRQAIREYSIKNRYNIKLVKNEKDKVRAVCKEGC 364

[Close]
BLAST of CmUC11G213420 vs. NCBI nr
Match: KAF4370634.1 (hypothetical protein G4B88_013390 [Cannabis sativa])

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-05
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 0 

Query: 205 YPIFRHEIDMQVVAFHVGMKFSTKEVLKEAIKEYVVKGSYNVKMVTNDKRRVRAIRTSGC 264
           YP+F   IDM+   FH+ M F++K+V+KEA++EY +K    ++ V NDKRR+R I    C
Sbjct: 150 YPVFNPTIDMKNPIFHLRMVFASKKVVKEALREYAIKNGRQIRFVKNDKRRIRVICQESC 209

[Close]
BLAST of CmUC11G213420 vs. NCBI nr
Match: KAF4350325.1 (hypothetical protein F8388_010881 [Cannabis sativa])

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-05
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 0 

Query: 205 YPIFRHEIDMQVVAFHVGMKFSTKEVLKEAIKEYVVKGSYNVKMVTNDKRRVRAIRTSGC 264
           YP+F   IDM+   FH+ M F++K+V+KEA++EY +K    ++ V NDKRR+R I    C
Sbjct: 162 YPVFNPTIDMKNPIFHLRMVFASKKVVKEALREYAIKNGRQIRFVKNDKRRIRVICQESC 221

[Close]
BLAST of CmUC11G213420 vs. NCBI nr
Match: XP_030502279.1 (uncharacterized protein LOC115717429 [Cannabis sativa])

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-05
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 0 

Query: 205 YPIFRHEIDMQVVAFHVGMKFSTKEVLKEAIKEYVVKGSYNVKMVTNDKRRVRAIRTSGC 264
           YP+F   IDM+   FH+ M F++K+V+KEA++EY +K    ++ V NDKRR+R I    C
Sbjct: 150 YPVFNPAIDMKNPIFHLRMVFASKKVVKEALREYAIKNGRQIRFVKNDKRRIRVICQESC 209

[Close]
BLAST of CmUC11G213420 vs. NCBI nr
Match: KAF4384689.1 (hypothetical protein F8388_003996, partial [Cannabis sativa])

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-05
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 0 

Query: 205 YPIFRHEIDMQVVAFHVGMKFSTKEVLKEAIKEYVVKGSYNVKMVTNDKRRVRAIRTSGC 264
           YP+F   IDM+   FH+ M F++K+V+KEA++EY +K    ++ V NDKRR+R I    C
Sbjct: 102 YPVFNPAIDMKNPIFHLRMVFASKKVVKEALREYAIKNGRQIRFVKNDKRRIRVICQESC 161

[Close]
BLAST of CmUC11G213420 vs. ExPASy TrEMBL
Match: A0A6P5EAS5 (uncharacterized protein LOC109704055 OS=Ananas comosus OX=4615 GN=LOC109704055 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.4e-06
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 205 YPIFRHEIDMQVVAFHVGMKFSTKEVLKEAIKEYVVKGSYNVKMVTNDKRRVRAIRTSGC 264
           YP FR E DMQ   F +GM F++ +  ++AI+EY +K  YN+K+V N+K +VRA+   GC
Sbjct: 305 YPEFRAETDMQNPQFGIGMLFASMKEFRQAIREYSIKNRYNIKLVKNEKDKVRAVCKEGC 364

[Close]
BLAST of CmUC11G213420 vs. ExPASy TrEMBL
Match: A0A803NF79 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.4e-06
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 0 

Query: 205 YPIFRHEIDMQVVAFHVGMKFSTKEVLKEAIKEYVVKGSYNVKMVTNDKRRVRAIRTSGC 264
           YP+F   IDM+   FH+ M F++K+V+KEA++EY +K    ++ V NDKRR+R I    C
Sbjct: 297 YPVFNPAIDMKNPIFHLRMVFASKKVVKEALREYAIKNGRQIRFVKNDKRRIRVICQESC 356

[Close]
BLAST of CmUC11G213420 vs. ExPASy TrEMBL
Match: A0A7J6GRK2 (CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_003996 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.4e-06
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 0 

Query: 205 YPIFRHEIDMQVVAFHVGMKFSTKEVLKEAIKEYVVKGSYNVKMVTNDKRRVRAIRTSGC 264
           YP+F   IDM+   FH+ M F++K+V+KEA++EY +K    ++ V NDKRR+R I    C
Sbjct: 102 YPVFNPAIDMKNPIFHLRMVFASKKVVKEALREYAIKNGRQIRFVKNDKRRIRVICQESC 161

[Close]
BLAST of CmUC11G213420 vs. ExPASy TrEMBL
Match: A0A7J6FIU3 (CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_013390 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.4e-06
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 0 

Query: 205 YPIFRHEIDMQVVAFHVGMKFSTKEVLKEAIKEYVVKGSYNVKMVTNDKRRVRAIRTSGC 264
           YP+F   IDM+   FH+ M F++K+V+KEA++EY +K    ++ V NDKRR+R I    C
Sbjct: 150 YPVFNPTIDMKNPIFHLRMVFASKKVVKEALREYAIKNGRQIRFVKNDKRRIRVICQESC 209

[Close]
BLAST of CmUC11G213420 vs. ExPASy TrEMBL
Match: A0A7J6EG62 (CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_009647 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.4e-06
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 0 

Query: 205 YPIFRHEIDMQVVAFHVGMKFSTKEVLKEAIKEYVVKGSYNVKMVTNDKRRVRAIRTSGC 264
           YP+F   IDM+   FH+ M F++K+V+KEA++EY +K    ++ V NDKRR+R I    C
Sbjct: 150 YPVFNPAIDMKNPIFHLRMVFASKKVVKEALREYAIKNGRQIRFVKNDKRRIRVICQESC 209

The following BLAST results are available for this feature:
BLAST of CmUC11G213420 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_020080379.11.5e-0546.67uncharacterized protein LOC109704055 [Ananas comosus][more]
KAF4370634.11.5e-0545.00hypothetical protein G4B88_013390 [Cannabis sativa][more]
KAF4350325.11.5e-0545.00hypothetical protein F8388_010881 [Cannabis sativa][more]
XP_030502279.11.5e-0545.00uncharacterized protein LOC115717429 [Cannabis sativa][more]
KAF4384689.11.5e-0545.00hypothetical protein F8388_003996, partial [Cannabis sativa][more]
BLAST of CmUC11G213420 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC11G213420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6P5EAS57.4e-0646.67uncharacterized protein LOC109704055 OS=Ananas comosus OX=4615 GN=LOC109704055 P... [more]
A0A803NF797.4e-0645.00Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A7J6GRK27.4e-0645.00CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_003996 P... [more]
A0A7J6FIU37.4e-0645.00CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_013390 P... [more]
A0A7J6EG627.4e-0645.00CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_009647 P... [more]
BLAST of CmUC11G213420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC11G213420.1CmUC11G213420.1mRNA