CmUC11G211580 (gene) Watermelon (USVL531) v1

Overview
NameCmUC11G211580
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionATP synthase subunit beta, chloroplastic
LocationCmU531Chr11: 7836310 .. 7838683 (-)
RNA-Seq ExpressionCmUC11G211580
SyntenyCmUC11G211580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTAATATTTACAACGCTTTGATAGTTAAAGGTCAAGATACTGCCGGTCAAGAAATTAATGTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCACAAAAAAGAGATTATTATTTTATTTCAATAGCTGCGGAAAAAGCCCTTCTTTGAACTTCCTCCCAGATACACGGCTTACATACCCGGCTCAACATTCTTGGAAAACAATCGAATCGAGGGTCCGGAGGAAAATTAGCTTTGGTTTAGCTTCCAACTAAGGCTCAGGGAGTTCTTTCCCCGGGATTGAGTGAACGATCTCATAACCCTCCACCCGTAGCCCACAAAAGCGCTTATTTATATCAAAAAATTGTGTACGATACCGCTTTCAAGCTCAAGCTTCTCGGGCTAACTTCTCAGGGCTTAATCGTTCATCGATCTTTTCTTCTTTCTTCAACCGGTCATATCTGATCTGTAGCTGGTAGCGACATGAGAAAAAGGTCCGGAATGGTGTATTTGATTTGCTAAATTGCGAGTTTAAGGGGTCGGATGGGTCAAGTACGGCCTCTAAAAACATGCGAGTTTCGGCTCTACCATTGAGTTAGCAACGCCAAAAATATTAAAAATTTTTCTGTGTAGATACAATCGGAATCAAAATAACAAAAGAAATGAAATTAGACGACGTAATCAAAATATTCCAATAAAAAAAAACTTCTTATATCACACAAAAGTAATTTTATTTTTTGTATCACAGAAAATCACATCGAAAGGAATTAACTTATCGACTCCCCGAACAGTACTATAAGAATCGGTACTGAACATCCCTCCTGTAATTGTACATGCTCCCATAGCAATAACATATTTTGGTTCAGGCATTTGCTCATATAATCTTACTAAAGAAGGAGCCATTTTCATTGTTACCGTACCAGCTGTTAAAATTAAGGGTTCGAAACAAGTGGGATTTTTTTGGAGATTGGATGCAGTTACTAATTCATGATCTGGCATGTACAGAATGAAAACTTCATTCTCGATTCTACGAGAATTTTTATGAAAGCCTTTCATTTGCTTCTCTTCGATGGAAGTTTTATTTTCCCAGAATGTAGCCATACATAGATCTAGTCAAAATTTATGAATCATAGAATAATTATTCGATTCTTTTTGCTCTTTGTATCATAATTCAATCAAAAAACTTCTAGAATTACCCCAATCTGTAAGATAAATAAAATTCTTTTTTATGTAATGCGACTTTACTCTTGTTTTCTTTATTATTGATAGGAATTCTCTTGTTAAGACCCTATGAATCAATTAAAACCTTAGATTCAGACTAAAACCACGATGATTCAATAAAAAAATCCTCCGCAGTATTGGGTTTTGGCGGTATTTATCATGCACTTCTGGGACCCGAGACCCTTGTATGAGTTGAGAAAGCACTTTTTCTAGTGGAGATATGTGAGATGATCGATAGAGGTTCCCTATATTGGAGAGTGGAAGGGGAAGTCTATGTCTTTATCCTAAGGGCTATAGAACTATCTCTGGCAAGCATTAAGCCGTCGAACTGCCGACTCTAGTTGCTTCTACGTGCTATATTCTCTTCGCCTAACACATTCAACTACCTTTTCTTGCAACGAGTTCGGCTGAGGTGAACAAGAATTGGACGTAGAAAGGGAATTTCTTTGTCTTTAGGACAGATCGGGGCCTCACTTCTTTCTCTCCAACAGCTTCCATTCCTCTGCCAAGCAAGAGAAAGCTGCGGGCATTCCTCAGATAAGATTCTTTACTCAAAGCTCAATTTGTGGAAAGCCTTCGATGGCTTCCTTATGAAAACATCAATTTTTATTTGGGTATAGACGGTATCTCTTTATTCTTCGTGATATTGACCACATTTCTGATCCCTATTTGCATTTTAGTGGGTTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCGGGTCAGAGCGTAAGCTAGTGATGCTTTCGGCTACTGGACTCTCGCCATCTAGGGTGCAGCACTCCACCGCTTCGCCTAGCAGCACGACGCTTGTATTGCTCTCCCACAACCCCGTTTTCACGGTTTAGGCTGCTCCCATTTCGCTCGCCGCTACTACGGGAATCGCTTTTGCTTTCTTTTCCTCTTGCTACTAAGATGTTTCAGTTCGCCAGCTTAGTCTCATTGCCCGCAGGGAAACAAGCCATTGGCTGCAAGTAGATTTACAAGATCAAGCATAAAGCATATGGCTCGCGTCAGAGATACAAAGCTAGCCATGCATTTTATAGTGCCGTGCAGGGGCGATAGGCGCGCCGCAGTCATGCATTCGAGTAAGAGCTTTTGCCTTTCATCTTCTGAAACCAACACTTTTGATGTTATTTGA

mRNA sequence

ATGCCTAATATTTACAACGCTTTGATAGTTAAAGGTCAAGATACTGCCGGTCAAGAAATTAATGCATTTGCTCATATAATCTTACTAAAGAAGGAGCCATTTTCATTGTTACCGTACCAGCTGTTAAAATTAAGGGTTCGAAACAAGTGGGATTTTTTTGGAGATTGGATGCAGTTACTAATTCATGATCTGGCATGTACAGAATGAAAACTTCATTCTCGATTCTACGAGAATTTTTATGAAAGCCTTTCATTTGCTTCTCTTCGATGGAAGTTTTATTTTCCCAGAATGTAGCCATACATAGATCTAGTCAAAATTTATGAATCATAGAATAATTATTCGATTCTTTTTGCTCTTTGTATCATAATTCAATCAAAAAACTTCTAGAATTACCCCAATCTGTAAGATAAATAAAATTCTTTTTTATGTAATGCGACTTTACTCTTGTTTTCTTTATTATTGATAGGAATTCTCTTGTTAAGACCCTATGAATCAATTAAAACCTTAGATTCAGACTAAAACCACGATGATTCAATAAAAAAATCCTCCGCAGTATTGGGTTTTGGCGGTATTTATCATGCACTTCTGGGACCCGAGACCCTTGTATGAGTTGAGAAAGCACTTTTTCTAGTGGAGATATGTGAGATGATCGATAGAGGTTCCCTATATTGGAGAGTGGAAGGGGAAGTCTATGTCTTTATCCTAAGGGCTATAGAACTATCTCTGGCAAGCATTAAGCCGTCGAACTGCCGACTCTAGTTGCTTCTACGTGCTATATTCTCTTCGCCTAACACATTCAACTACCTTTTCTTGCAACGAGTTCGGCTGAGGTGAACAAGAATTGGACGTAGAAAGGGAATTTCTTTGTCTTTAGGACAGATCGGGGCCTCACTTCTTTCTCTCCAACAGCTTCCATTCCTCTGCCAAGCAAGAGAAAGCTGCGGGCATTCCTCAGATAAGATTCTTTACTCAAAGCTCAATTTGTGGAAAGCCTTCGATGGCTTCCTTATGAAAACATCAATTTTTATTTGGCATATGGCTCGCGTCAGAGATACAAAGCTAGCCATGCATTTTATAGTGCCGTGCAGGGGCGATAGGCGCGCCGCAGTCATGCATTCGAGTAAGAGCTTTTGCCTTTCATCTTCTGAAACCAACACTTTTGATGTTATTTGA

Coding sequence (CDS)

ATGCCTAATATTTACAACGCTTTGATAGTTAAAGGTCAAGATACTGCCGGTCAAGAAATTAATGCATTTGCTCATATAATCTTACTAAAGAAGGAGCCATTTTCATTGTTACCGTACCAGCTGTTAAAATTAAGGGTTCGAAACAAGTGGGATTTTTTTGGAGATTGGATGCAGTTACTAATTCATGATCTGGCATGTACAGAATGA

Protein sequence

MPNIYNALIVKGQDTAGQEINAFAHIILLKKEPFSLLPYQLLKLRVRNKWDFFGDWMQLLIHDLACTE
Homology
[Close]
BLAST of CmUC11G211580 vs. ExPASy Swiss-Prot
Match: A0ZZ42 (ATP synthase subunit beta, chloroplastic OS=Gossypium barbadense OX=3634 GN=atpB PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.7e-04
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 0 

Query: 1  MPNIYNALIVKGQDTAGQEINAFAHI 27
          MPNIYNAL+VKGQDTAGQ+IN    +
Sbjct: 40 MPNIYNALVVKGQDTAGQQINVTCEV 65

[Close]
BLAST of CmUC11G211580 vs. ExPASy Swiss-Prot
Match: Q2L917 (ATP synthase subunit beta, chloroplastic OS=Gossypium hirsutum OX=3635 GN=atpB PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.7e-04
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 0 

Query: 1  MPNIYNALIVKGQDTAGQEINAFAHI 27
          MPNIYNAL+VKGQDTAGQ+IN    +
Sbjct: 40 MPNIYNALVVKGQDTAGQQINVTCEV 65

[Close]
BLAST of CmUC11G211580 vs. ExPASy Swiss-Prot
Match: B1NWF7 (ATP synthase subunit beta, chloroplastic OS=Manihot esculenta OX=3983 GN=atpB PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.2e-04
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 0 

Query: 1  MPNIYNALIVKGQDTAGQEINAFAHI 27
          MPNIYNAL+VKG+DTAGQEIN    +
Sbjct: 42 MPNIYNALVVKGRDTAGQEINVTCEV 67

[Close]
BLAST of CmUC11G211580 vs. ExPASy Swiss-Prot
Match: Q06GQ3 (ATP synthase subunit beta, chloroplastic OS=Piper cenocladum OX=398741 GN=atpB PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 3.8e-04
Identity = 19/26 (73.08%), Postives = 21/26 (80.77%), Query Frame = 0 

Query: 1  MPNIYNALIVKGQDTAGQEINAFAHI 27
          MPNIYNALIVKGQDT GQ+IN    +
Sbjct: 40 MPNIYNALIVKGQDTVGQQINVTCEV 65

[Close]
BLAST of CmUC11G211580 vs. ExPASy Swiss-Prot
Match: Q6QBP2 (ATP synthase subunit beta, chloroplastic OS=Castanea sativa OX=21020 GN=atpB PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 5.0e-04
Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 0 

Query: 1  MPNIYNALIVKGQDTAGQEINAFAHI 27
          MPNIYNAL+VKG+DTAGQ+IN    +
Sbjct: 40 MPNIYNALVVKGRDTAGQQINVTCEV 65

[Close]
BLAST of CmUC11G211580 vs. TAIR 10
Match: ATCG00480.1 (ATP synthase subunit beta )

HSP 1 Score: 43.9 bits (102), Expect = 6.0e-05
Identity = 18/26 (69.23%), Postives = 21/26 (80.77%), Query Frame = 0 

Query: 1  MPNIYNALIVKGQDTAGQEINAFAHI 27
          MPNIYNAL+VKG+DT GQEIN    +
Sbjct: 40 MPNIYNALVVKGRDTLGQEINVTCEV 65

The following BLAST results are available for this feature:
BLAST of CmUC11G211580 vs.
Match NameE-valueIdentityDescription
BLAST of CmUC11G211580 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A0ZZ421.7e-0473.08ATP synthase subunit beta, chloroplastic OS=Gossypium barbadense OX=3634 GN=atpB... [more]
Q2L9171.7e-0473.08ATP synthase subunit beta, chloroplastic OS=Gossypium hirsutum OX=3635 GN=atpB P... [more]
B1NWF72.2e-0473.08ATP synthase subunit beta, chloroplastic OS=Manihot esculenta OX=3983 GN=atpB PE... [more]
Q06GQ33.8e-0473.08ATP synthase subunit beta, chloroplastic OS=Piper cenocladum OX=398741 GN=atpB P... [more]
Q6QBP25.0e-0469.23ATP synthase subunit beta, chloroplastic OS=Castanea sativa OX=21020 GN=atpB PE=... [more]
BLAST of CmUC11G211580 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmUC11G211580 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00480.16.0e-0569.23ATP synthase subunit beta [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC11G211580.1CmUC11G211580.1mRNA