CmUC11G211460 (gene) Watermelon (USVL531) v1

Overview
NameCmUC11G211460
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionDNA-directed RNA polymerase
LocationCmU531Chr11: 7798485 .. 7805024 (+)
RNA-Seq ExpressionCmUC11G211460
SyntenyCmUC11G211460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTTTTAGGTCCAATTCCATCAATTTTGGTTGAGGCAATTCTGACTTGTCGAAATTATTGTACGTCAAATAACATCAAAAGTGTTGGTTTCAGAGGATGGAATGTCGAATGTTTTTTCACCTGGAGAACTCATTGGATTGTTGCGAGCGGAACGAACAGGGCGTGCTTTGGAAGAAGCGATCTGTTACCGAGCCGTATTATTGGGAATAACGGACTCAATGAAAGGACATCAATTCAAATCCTGGATTTTCGAATTGAGAGAGATCAAGAATTCTCACTATTTCTTAGATTCATGGACCCAATTCAATTCAGTGGGATCTTTCATTCACATTTTTTTCCATCAAGAACGTTTTATAAAACTCTTAGACTCTAAAAAAGGGTATCCTGAGCAATTTCAATAATCGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAATCATACTCAATTCGATGGAAGAGAAAGCCTAAGAGAAGACCATGCTACCAGTCCTAGCTAGCACCGAAGCCAAGGGAAAGCATTTGAATAAGAGGAATGAAAGGCTTGACTTTAGAGTTCGATCTGGTTTTCATCATTTTCGCTTAAATAACAAAAAAGGAAAGAAGGGAGTGTTTTAATTTCTTACCTATCGAGCTTGAGCACAACTTTAACCCGTCAATTTTGGATCCAATTCGGAATTTTCCTTGGGAGGTATCGGGAAGGAATTGGAAGATATGCTTTTTTCTTTTCTAATCTGTTTAGGGGGGGGAAGGAGGAGAGGCACGGAAACAGGATGTGACGGGGATCTCCCTAGTCCCAGAGTGGGAGTGCCGATGAACCCCACTTGGGAGTAGTGGGTCTTCTCCCATAGGCTCTGAAGAGGGTCAATACGATCCCTTTAAGATAAGAAAGAACAAAAAATTCGACTATCAGAGCCTTTTAAAGAGGTATAGGGGTGTGGGTGTACTTTAAGGGTGATTTTTACTTCGAAAGCCATGAGCCGGCTCTGTGAGAAGGGCGGTGGACAGAAATGGCCTTGTTGTACCTCACTCTCGTCTTCAATGGGGTCTGCTCTTTTTTTTTTTGGGGAGTATGCCAATATGATCTTAATGAGGTGCGGGGCTTTGCATCTGACATTCGTTGGGCTTCCCTCTTCGGGGGCCTGCGTCCCGGCGTTTTTGTGCAATAAACCCCTCCGGCCGAAGACTAGTGGTAGGTGGTCCCGCGGAGCTTTCGGAGAAGGGTAGCCTAGTGTGTAAGCACAGCAATGAACCGCGGCGAACCCTCAGACGACCTATCTAAGATTAGGGGGGAGATCCGAAGTAGTGGTGACCCTTTCACGAGTCCACAATCACTACACGAGATGAACCTTGGTTTGGTGAATTGAAGTTGGCCTTAGGTGTAATAGGACTCCCAGTTACTGCGCACGATCGTATACTGAGGTGCTCCCCGCCGGTTGTTGGAACGACGCGCAAATCAATAACTAGAATGAAAAAAATGGGAATACCAACGCATCCGGGAATAAACGATTGATCTCGATTAATAGACCCGCTAACGCCCTGAACCATATAGTACTTACTACCGGTGCCACGGAGAGATATGTTTTTAGATCTCGCATTTAAAACCCTCCTACTTTATACTTTCTCCAGACCTCCGGGAAAAGCATGAAAAAAAAAGGCTCGAATGGTACGATCCCTCCGTCACCCCAAAATGAAAGGGGCGATCTCGTAGTTCTTGGTCTGTGAAGATACGTTGTTAGGTGCTCCGTTTTATTTTCCCATTGAGGCCTGTTTCCGAGATCGATATAGCCCTCTCGAAACCTAGCTGTTAGAGTCGCATTTCCGGGCTAATATTCCACTTAATCCCCGAATGGGTACTTTAACCCTTCTCCTGCAAGGTATAGAACAATTAAGGTGTGGGCCCCGCCAGGTTGTCTCTTGCCTGCCCATGGATTCAACAGCAGTTTGAAAGGTTGACCTATTCGGGAATCTCCGGATCTACGCTTATTTTCAACTCCCCGAAGCATTTCGTCACTTACTACGCCCTTCCATTATTTTAACAACTGATCATTAAGGGCCTCTTGAATCGTCTATAACGTACAAATATATATGAAAATATAGCCAAAATATCTGAATCAATCGCTTACCAAAATATCATTAAGCGGGGATCCCCCTTAAGATTAGGGGGAAACAGGAGCTTTTGGTTTGGATGCTTCGGTGGGTTCGGATGAAACAGAAAAATCTTACTCCTCAGTGGATGATTCGGCATCCTCGGGTGCTTATGTGTATGCTTTTTCTGTTTAGGAAATGGTAGAACCATAAATACTATCCGAAATAGTGAAGGGTGCTTGATAATATTCCATTCCTTGAAAGCTTGTGAATACTAGAGCCAGTGAAACGGTAGCTACTAAAGCGTAAACTGCTCGTTTTTCCTTCCCCGCGAGTATAGCATGATGAGCCCAAGTTACGGCACGGGATTTCGAAAAGGTACTCTTGGAACACCAATAGGCATTAAAGCAAAGAAAAAAGAATTAATTACTATAGCTAACTTTGATGTGGAAGCGTAAGAACGGGTTTATTGTCTTAATAAATAAGATCGTCCTTTATCAGATTTTATCTTTTAGCATATTTTATACATAGATTTAATAAGTTCATAAAAAAGAAGATCAGCCTGGAGTTGGAGGAGGCTGAATAGAAACAGATTCTTGCGGATCCCTGCTTCCCTTATGTTGTTGAAAGGCATTCTTCACGTCAAGTTGATTGAAATAAGGGCAATTTTTTTATTGCAGCCAAGGCTGCAACAAAACCGCTCATACCGGGCAATGCAAGGGAAGCCATCGATAAGATACTGAAAGTCGTAAAGATTTTTGGAATTGGGATAGCCAGTCCTCCCATTTCATCGAGATAAACCAGACGTATTCTATCATAACTTGTTCCCGCCAAGAAAAAAAGCGCAGCACCGCCTATGGCATAGTCTGACGCATCCGTGTGTACTTCAAATGGCTTAGTGTAATCTGGCAACTGCAATACGGAGTCATCAATCACTGCCTGCTTGTTGTCCTCAAAAGCTCTTTGACACTTTTCCGATCAGTGAAATGTAATGAGTAGTGTGTTTCAAAAGAATTTTGTTTTTTGTAATCAATTAATCGGTTTTTTTCATATGAATAAAATTGGTTAAAATCTTTATTTTTACGATCTTGCTTGACTCTATTTCGCCATTTTTGGGGGAGTAATTTTGCCCATCTAATCGGATCTAAATCGTTCTAGCTCGACATTAGGAGCACGGGGGCTCGAGATATCTAAAGGAGGTACGGACCCCTCCCATCGTACGGTACGATGCAGTTGAAAAACGTAAGCCCAGCCTATACAAACCAAACAAGGGCTTACGTTTTCTTGCTTTTCTTTGTTGAACCCTCTACGGTCTACCCTCTTAAGTAACATAGCGCAACTCAACGAAAGGAAATGAAAATGTTTGCGTATTCAGATGTGAAATGAACGGAATGATCAGTGAGTTGGAGATGTTTTTTAGATTGTTAGATCAAAACTACAAACTGAATCAAAATGAGCTGCCCGCTCTAAAGGCTTTCCAAGAACTTCCTTGGGTGGGAAAGTCTAGACTAGAGCCGACGACTCGTGAAGAGATAAACCGCCAGAAGCAGGCAAGAAAAAGTCCCTCCCCTTTTTGTTTGCAAGTAGAGCACTAAAAGCACCAAAGCTATGTTCGCATCCCCCGACTCAACATCGAAGTGGTCTCGTGCGCGGCCATCATGTTGTCGGGTCTGAGCTGCCTGCGGTTACAGAATCGCCTGCGGAAGCCCCCTTGACTCTCTCTCTATAAAAAAAAGCTTTCTGCATCATCAGCGGCGCTGGCGCAGGAGTCCAGCAAATATCGTAGTTTTCTCCTTAAGAGCAAGAGGTTCAAACTGAGATGTTGAAGCACGCACCCTTTATCTTATGCTATGGGTAAAGAATCAAAGGCAACGAGCCAAACCCAGTTCTTTTTAGGAAGCAACCTCGAAAACAGCAGATGGAACTTACCTACAACAAGACCTTTCTTCTTTCTTTTTCTTTCCGCATAGTAGGAAGTAAGAAGATAGGGTTCTTTGGATTCATTTTACAGTCTATTGAAACGAGACGAAGAAAGAGAAAAAGAGTTTAGTTAATCAAGTCTACTTAAGAAAGGAAAGATTAGCTTAGTAATTACCTTAGCCCAATACACAAATGTATAACTCCTCAGGAATTTCAATTGCGCTTATATTCATCACTGTAGGAATTGGGTTCAAGCTTTCCCCAGCCCCTTCTCATCAATGGACTCCTGACGTATACGAAGGAGTGCGATTCGTTCGATAAATTCGGTCTTATTATTCCTACATGGTACTAACACTCCTTTGATACTTCCAAGAGTTTCTCTGCTTCTTTTATTTATTTGTGCTTAATTTTTTCGATGATACTAGAAATCATATAATAACTTGGTATAATTCGATTTTTTGTATTGTTTCATCTGCTCTCTCTTTCCGGCTTAGCCTATCGCTCCATGGGCTTCTATCCCCCTGGTCGTATTCAAAGGATCTCTCAAGACCTTCTTCTGGCATCACAGCCTATTCTATCCTCCTCAACCTCTTCCTACTGAGGGGTTCAATCCATTGCGGTGTAGCGGATTCCATTCATTGGAAGTTCCCTTGGATGTGGGACGAGGTGTACTATCTTAGAGTGAAGCCCCTGAAATTGCAGTATTAAAGAAAGCAAGTTTTTCCCGCAGGAGGGGGATAGTCAATCTCACCTATTTCCTTCCTAATCCGACTAGGTTGAAAGGTTACGTTTCAGGAAGGATTCGACATAGTTTTATCCATATACTAGGTCATAGAGAGTCAAACTTTCAGTAAGTTGTTACGATTCAACCAGAACCAAAGGGCGTATAATTTAGAGACTACGAAACAAAGGATTAGGTGAAGTAGTCTTTTCACGGGCAATATTCTTTTTTTGTAGGGATACAATTCGAAATAGAAAATTTAAAGAAACTTATTTTCTTCCAATAAGTAGATTCGGAATTAAGGTAAGGAATGACAAATATGAAAATAAGGGCCTCCATTCGGAAAATTTGTAGATTGGATGCAGTTACTAATTCATGATCTGGCATGTACAGAATGAAAACTTCATTCTCGATTCTACGAGAATTTTTATGAAAGCCTTTCATTTGCTTCTCTTCGATGGAAGTTTTATTTTCCCAGAATTCTAAAAAAAAGAAGGGCAAGGGGATTAGATTAGTCACAGATATTTGATTGTTTTTCTAATCTTCTTCACCCCTTCCCAAATCAATAACTAGAATGAAAAAAATGGGAATACCAACGCATCCGGGAATAAACGATTGATCTCGATTAATAGACCCGCTAACGCCCCGAACCCCGGATATTCGAAAGAAACGATTGCTTAATTACAGTATTGATTTTGGGATCTGTATATTTTGTGGTAACTGCGTTGAATATTGTCCAACAAATTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGATCGTCACGAATTGAATTATAATCAAATTTCTTTGGTTTTTGTTGTTTTTGATGTTGAAACGGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTAAGGGTATCCGTCTTTATAGAAGCTTTAATTTTCGTGCTTATCCTAATTGTCGGGTTAGTTTATGCATGGCGAAAAGGAGTAAGAACCCTTGGATTATCACTTATTCAATGCTTATTGAATGACGGAATATAATGAAAAAAAGACAAAGAAACGTTTATCCTTTAAACCAAAATAAGTATAAACTCAGTTAGGATTTATTTGACTTAGCAGCCTTAGCTTTAGACTAGCCCTTCTGGAAAGAGATTCAATAGCACCGGTCAAAGAGCTAGCAATGACTTTCTTCCCACCCGGAGTGATGGTTAGGCCATGGCCAAGAGAACCCTTCAGATACCGTAAGATGCGCCAACGGAAAAGAGGATTTAGAGACAACGCGTAAAGCCGAGTTACCCCAACCGTCAGCAAGAGCCCCCTAGTAGTCAAGTTGCAAGCGTAGGCTTCAAAGGGGGGGAGTTTCACCGACTAGTATATATTATATGAATTCTGGTCGAACAAAGAGCCAAGCCGTTATTAATGGCTTCAAAACGGGATATCGCTGCTTCAAAGGAAGGCAAGGCAGACCGAACTACAAGAGCATTTGGCAACTATCGCTAGAAAGAAGAAGCCAAAGTCAAAAGGTAAGTTACTCGACTCGCTACAACAGCTCCACCAACTAAACTAGCATGTAATGTTGCCGGGAGGCCTGAAAAAAGAAAGCGCTTTCTTTGGGTGGCACAGCATGGGATTGCCTTAGTTGAGTCTCTCGAACGGGAAGAAAAGGATTCCGTTCCATTTCCTTTTTTAAGGAAAAGAGGCCGTAGCCCGCATGGGGATCAGATCAGATACTATCTTTGATGCATTTTCACAACAGCAATAAGTAGCAAGGGCCCTTTTCATCGACCTTGTCGACCAAGCTTGTAGGGCCGCCACGTGA

mRNA sequence

ATGGCTTTTTTAGGTCCAATTCCATCAATTTTGGTTGAGGCAATTCTGACTTGTCGAAATTATTGTACGTCAAATAACATCAAAAGTGTTGGTTTCAGAGGATGGAATGTCGAATGTTTTTTCACCTGGAGAACTCATTGGATTGTTGCGAGCGGAACGAACAGGGCGTGCTTTGGAAGAAGCGATCTGTTACCGAGCCGATGTGACGGGGATCTCCCTAGTCCCAGAGTGGGAGTGCCGATGAACCCCACTTGGGAGGTGATTTTTACTTCGAAAGCCATGAGCCGGCTCTGTGAGAAGGGCGGTGGACAGAAATGGCCTTGTTGTACCTCACTCTCGTCTTCAATGGGGTGTAATAGGACTCCCAGTTACTGCGCACGATCGTATACTGAGCTGTTAGAGTCGCATTTCCGGGCTAATATTCCACTTAATCCCCGAATGGGTACTTTAACCCTTCTCCTGCAAGGAGCTTTTGGTTTGGATGCTTCGGTGGGTTCGGATGAAACAGAAAAATCTTACTCCTCAGTGGATGATTCGGCATCCTCGGGTGCTTATGTGTATGCTTTTTCTCTTGTGAATACTAGAGCCAGTGAAACGGTAGCTACTAAAGCATGTGAAATGAACGGAATGATCAGTGAGTTGGAGATGTTTTTTAGATTGTTAGATCAAAACTACAAACTGAATCAAAATGAGCTGCCCGCTCTAAAGGCTTTCCAAGAACTTCCTTGGGTGGGAAAGTCTAGACTAGAGCCGACGACTCGTGAAGAGATAAACCGCCAGAAGCAGGCAAGAAAAAGTCCCTCCCCTTTTTGTTTGCAACTTTCTGCATCATCAGCGGCGCTGGCGCAGGAGTCCAGCAAATATCGTAGTTTTCTCCTTAAGAGCAAGAGCAGCCTTAGCTTTAGACTAGCCCTTCTGGAAAGAGATTCAATAGCACCGGTCAAAGAGCTAGCAATGACTTTCTTCCCACCCGGAGTGATGGTTAGGCCATGGCCAAGAGAACCCTTCAGATACCGTAAGATGCGCCAACGGAAAAGAGGATTTAGAGACAACGCGTAAAGCCGAGTTACCCCAACCGTCAGCAAGAGCCCCCTAGTAGTCAAGTTGCAAGCGTAGGCTTCAAAGGGGGGGAGTTTCACCGACTAGTATATATTATATGAATTCTGGTCGAACAAAGAGCCAAGCCGTTATTAATGGCTTCAAAACGGGATATCGCTGCTTCAAAGGAAGGCAAGGCAGACCGAACTACAAGAGCATTTGGCAACTATCGCTAGAAAGAAGAAGCCAAAGTCAAAAGGTAAGTTACTCGACTCGCTACAACAGCTCCACCAACTAAACTAGCATGTAATGTTGCCGGGAGGCCTGAAAAAAGAAAGCGCTTTCTTTGGGTGGCACAGCATGGGATTGCCTTAGTTGAGTCTCTCGAACGGGAAGAAAAGGATTCCGTTCCATTTCCTTTTTTAAGGAAAAGAGGCCGTAGCCCGCATGGGGATCAGATCAGATACTATCTTTGATGCATTTTCACAACAGCAATAAGTAGCAAGGGCCCTTTTCATCGACCTTGTCGACCAAGCTTGTAGGGCCGCCACGTGA

Coding sequence (CDS)

ATGGCTTTTTTAGGTCCAATTCCATCAATTTTGGTTGAGGCAATTCTGACTTGTCGAAATTATTGTACGTCAAATAACATCAAAAGTGTTGGTTTCAGAGGATGGAATGTCGAATGTTTTTTCACCTGGAGAACTCATTGGATTGTTGCGAGCGGAACGAACAGGGCGTGCTTTGGAAGAAGCGATCTGTTACCGAGCCGATGTGACGGGGATCTCCCTAGTCCCAGAGTGGGAGTGCCGATGAACCCCACTTGGGAGGTGATTTTTACTTCGAAAGCCATGAGCCGGCTCTGTGAGAAGGGCGGTGGACAGAAATGGCCTTGTTGTACCTCACTCTCGTCTTCAATGGGGTGTAATAGGACTCCCAGTTACTGCGCACGATCGTATACTGAGCTGTTAGAGTCGCATTTCCGGGCTAATATTCCACTTAATCCCCGAATGGGTACTTTAACCCTTCTCCTGCAAGGAGCTTTTGGTTTGGATGCTTCGGTGGGTTCGGATGAAACAGAAAAATCTTACTCCTCAGTGGATGATTCGGCATCCTCGGGTGCTTATGTGTATGCTTTTTCTCTTGTGAATACTAGAGCCAGTGAAACGGTAGCTACTAAAGCATGTGAAATGAACGGAATGATCAGTGAGTTGGAGATGTTTTTTAGATTGTTAGATCAAAACTACAAACTGAATCAAAATGAGCTGCCCGCTCTAAAGGCTTTCCAAGAACTTCCTTGGGTGGGAAAGTCTAGACTAGAGCCGACGACTCGTGAAGAGATAAACCGCCAGAAGCAGGCAAGAAAAAGTCCCTCCCCTTTTTGTTTGCAACTTTCTGCATCATCAGCGGCGCTGGCGCAGGAGTCCAGCAAATATCGTAGTTTTCTCCTTAAGAGCAAGAGCAGCCTTAGCTTTAGACTAGCCCTTCTGGAAAGAGATTCAATAGCACCGGTCAAAGAGCTAGCAATGACTTTCTTCCCACCCGGAGTGATGGTTAGGCCATGGCCAAGAGAACCCTTCAGATACCGTAAGATGCGCCAACGGAAAAGAGGATTTAGAGACAACGCGTAA

Protein sequence

MAFLGPIPSILVEAILTCRNYCTSNNIKSVGFRGWNVECFFTWRTHWIVASGTNRACFGRSDLLPSRCDGDLPSPRVGVPMNPTWEVIFTSKAMSRLCEKGGGQKWPCCTSLSSSMGCNRTPSYCARSYTELLESHFRANIPLNPRMGTLTLLLQGAFGLDASVGSDETEKSYSSVDDSASSGAYVYAFSLVNTRASETVATKACEMNGMISELEMFFRLLDQNYKLNQNELPALKAFQELPWVGKSRLEPTTREEINRQKQARKSPSPFCLQLSASSAALAQESSKYRSFLLKSKSSLSFRLALLERDSIAPVKELAMTFFPPGVMVRPWPREPFRYRKMRQRKRGFRDNA
Homology
[Close]
BLAST of CmUC11G211460 vs. NCBI nr
Match: YP_009561505.1 (RNA polymerase betasubunit [Commiphora foliacea] >QAT19593.1 RNA polymerase betasubunit [Commiphora foliacea])

HSP 1 Score: 86.7 bits (213), Expect = 4.5e-13
Identity = 39/53 (73.58%), Postives = 41/53 (77.36%), Query Frame = 0 

Query: 19   RNYCTSNNIKSVGFRGWNVECFFTWRTHWIVASGTNRACFGRSDLLPSRCDGD 72
            RNYCTSNNIKSV FR WNV+CFF  RT WIV SG NRACFGR DLL S   G+
Sbjct: 1225 RNYCTSNNIKSVDFRRWNVKCFFARRTGWIVTSGANRACFGRRDLLSSYLIGN 1277

[Close]
BLAST of CmUC11G211460 vs. ExPASy TrEMBL
Match: A0A410P9V7 (DNA-directed RNA polymerase OS=Commiphora foliacea OX=1173001 GN=rpoC2 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.2e-13
Identity = 39/53 (73.58%), Postives = 41/53 (77.36%), Query Frame = 0 

Query: 19   RNYCTSNNIKSVGFRGWNVECFFTWRTHWIVASGTNRACFGRSDLLPSRCDGD 72
            RNYCTSNNIKSV FR WNV+CFF  RT WIV SG NRACFGR DLL S   G+
Sbjct: 1225 RNYCTSNNIKSVDFRRWNVKCFFARRTGWIVTSGANRACFGRRDLLSSYLIGN 1277

The following BLAST results are available for this feature:
BLAST of CmUC11G211460 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009561505.14.5e-1373.58RNA polymerase betasubunit [Commiphora foliacea] >QAT19593.1 RNA polymerase beta... [more]
BLAST of CmUC11G211460 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC11G211460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A410P9V72.2e-1373.58DNA-directed RNA polymerase OS=Commiphora foliacea OX=1173001 GN=rpoC2 PE=4 SV=1[more]
BLAST of CmUC11G211460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC11G211460.1CmUC11G211460.1mRNA