CmUC11G209730 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC11G209730
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Photosystem I P700 chlorophyll a apoprotein A2
Location	CmU531Chr11: 6164308 .. 6165049 (-)
RNA-Seq Expression	CmUC11G209730
Synteny	CmUC11G209730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTATCGATGGAGGAGCTGGCAGTAGCTGAACTCTGGGAGAGACTGGAAGAGGCCGTGGAAGGGACTGTCGAGATGGTGTAACAAGTGGTGGTGACCACCCGGTCTTCATTAGCTATTTATGGCAGGAGCTCTTTCGTTTACAAGGGACACAATTTAACATGAGTACAGCTTTCCACCCCCTATTTATGAGTCATTTTTTTCATTTCATTGGTCCTTATTTCTTATTTCAGCATATCGCCTTGAATGGATTGCCTGCCTTTCATAGCTTACTAATAGATACTAGTAGGAACTACAAACAGCTATCAAGACCGGATCAACTAGATGTTCTATGCTTTCAGATCAAATCATCCATTGGTAGCCCCGAAGGAGCAGGAACTGCCATTCTAACCCTTCTCGGGGGATTCCATCCGCAAACGCAAAGTTTATGGAGGAAGAGGCGGGATATGTCGTCAGTGTAGAAAGAGAATCTTCTCATTCTGAAAATGCCCCTTTAGCCCACTCTCTTTTTACATAGCGTGGGAGACAGGGATAAAGATCTTAATGTTTGGTGCCGCGAAACCTTTGATAGAAATGGGTGGATGGTCAGTTATCATACAAAGGTATATCCTTCATTCCTCAAGCGTTGCTAGGTGGTAATAATGCTTCTTGCTTGATAGCTCAGGTGCACCATTGCCTTACCACTTGGCCACGCCCCATTTATATTCAACATTAATAAACACTAATATTGGTAGTGGTTGGTCG

mRNA sequence

GCTATCGATGGAGGAGCTGGCAGTAGCTGAACTCTGGGAGAGACTGGAAGAGGCCGTGGAAGGGACTGTCGAGATGGTGTAACAAGTGGTGGTGACCACCCGGTCTTCATTAGCTATTTATGGCAGGAGCTCTTTCGTTTACAAGGGACACAATTTAACATGAGTACAGCTTTCCACCCCCTATTTATGAGTCATTTTTTTCATTTCATTGGTCCTTATTTCTTATTTCAGCATATCGCCTTGAATGGATTGCCTGCCTTTCATAGCTTACTAATAGATACTAGTAGGAACTACAAACAGCTATCAAGACCGGATCAACTAGATGTTCTATGCTTTCAGATCAAATCATCCATTGGTAGCCCCGAAGGAGCAGGAACTGCCATTCTAACCCTTCTCGGGGGATTCCATCCGCAAACGCAAAGTTTATGGAGGAAGAGGCGGGATATGTCGTCAGTGTAGAAAGAGAATCTTCTCATTCTGAAAATGCCCCTTTAGCCCACTCTCTTTTTACATAGCGTGGGAGACAGGGATAAAGATCTTAATGTTTGGTGCCGCGAAACCTTTGATAGAAATGGGTGGATGGTCAGTTATCATACAAAGGTATATCCTTCATTCCTCAAGCGTTGCTAGGTGGTAATAATGCTTCTTGCTTGATAGCTCAGGTGCACCATTGCCTTACCACTTGGCCACGCCCCATTTATATTCAACATTAATAAACACTAATATTGGTAGTGGTTGGTCG

Coding sequence (CDS)

ATGAGTACAGCTTTCCACCCCCTATTTATGAGTCATTTTTTTCATTTCATTGGTCCTTATTTCTTATTTCAGCATATCGCCTTGAATGGATTGCCTGCCTTTCATAGCTTACTAATAGATACTAGTAGGAACTACAAACAGCTATCAAGACCGGATCAACTAGATGTTCTATGCTTTCAGATCAAATCATCCATTGGTAGCCCCGAAGGAGCAGGAACTGCCATTCTAACCCTTCTCGGGGGATTCCATCCGCAAACGCAAAGTTTATGGAGGAAGAGGCGGGATATGTCGTCAGTGTAG

Protein sequence

MSTAFHPLFMSHFFHFIGPYFLFQHIALNGLPAFHSLLIDTSRNYKQLSRPDQLDVLCFQIKSSIGSPEGAGTAILTLLGGFHPQTQSLWRKRRDMSSV

Homology

[Close]

BLAST of CmUC11G209730 vs. NCBI nr
Match: QRI59917.1 (photosystem I P700 chlorophyll a apoprotein A2 [Derris harrowiana])

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 66  GSPEGAGTAILTLLGGFHPQTQSLW 91
           G+PEGAGTAILTLLGGFHPQTQSLW
Sbjct: 245 GTPEGAGTAILTLLGGFHPQTQSLW 269

[Close]

BLAST of CmUC11G209730 vs. NCBI nr
Match: YP_009705506.1 (photosystem I P700 apoprotein A2 [Valeriana officinalis] >QAU08321.1 PsaB, partial [Valeriana flaccidissima] >QAU08322.1 PsaB, partial [Valeriana jatamansi] >QFQ35200.1 photosystem I P700 apoprotein A2 [Valeriana officinalis])

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 66  GSPEGAGTAILTLLGGFHPQTQSLW 91
           G+PEGAGTAILTLLGGFHPQTQSLW
Sbjct: 245 GTPEGAGTAILTLLGGFHPQTQSLW 269

[Close]

BLAST of CmUC11G209730 vs. NCBI nr
Match: QRI60912.1 (photosystem I P700 chlorophyll a apoprotein A2 [Psophocarpus tetragonolobus])

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 66  GSPEGAGTAILTLLGGFHPQTQSLW 91
           G+PEGAGTAILTLLGGFHPQTQSLW
Sbjct: 245 GTPEGAGTAILTLLGGFHPQTQSLW 269

[Close]

BLAST of CmUC11G209730 vs. NCBI nr
Match: YP_009449973.1 (photosystem I P700 apoprotein A2 [Burmannia disticha] >ANK36170.1 photosystem I P700 apoprotein A2 [Burmannia disticha] >AYW12056.1 photosystem I P700 apoprotein A2 [Burmannia disticha])

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 66  GSPEGAGTAILTLLGGFHPQTQSLW 91
           G+PEGAGTAILTLLGGFHPQTQSLW
Sbjct: 245 GTPEGAGTAILTLLGGFHPQTQSLW 269

[Close]

BLAST of CmUC11G209730 vs. NCBI nr
Match: YP_009399338.1 (photosystem I P700 apoprotein A2 [Kapraunia schneideri] >ARW68944.1 photosystem I P700 apoprotein A2 [Kapraunia schneideri])

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-04
Identity = 37/84 (44.05%), Postives = 43/84 (51.19%), Query Frame = 0


Query: 12  HFFHFIGPYFLFQHIALNG----LPAFHSLL-IDTSRNYKQLSRPDQLDVLCFQIKSSIG 71
           H  H   P    QH+  N     LP    L    T R ++  ++PD L       K   G
Sbjct: 193 HLVHIAIPESRGQHVRWNNFTEILPHPEGLTPFFTGRWFEYANKPDTL-------KHIFG 252

Query: 72  SPEGAGTAILTLLGGFHPQTQSLW 91
           S EG+GTAILT LGGFHPQTQSLW
Sbjct: 253 SDEGSGTAILTFLGGFHPQTQSLW 269

[Close]

BLAST of CmUC11G209730 vs. ExPASy Swiss-Prot
Match: A4GG98 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Phaseolus vulgaris OX=3885 GN=psaB PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.3e-07
Identity = 23/25 (92.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 66  GSPEGAGTAILTLLGGFHPQTQSLW 91
           G+P+GAGTAILTLLGGFHPQTQSLW
Sbjct: 245 GTPQGAGTAILTLLGGFHPQTQSLW 269

[Close]

BLAST of CmUC11G209730 vs. ExPASy Swiss-Prot
Match: Q2PMU2 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Glycine max OX=3847 GN=psaB PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.3e-07
Identity = 23/25 (92.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 66  GSPEGAGTAILTLLGGFHPQTQSLW 91
           G+P+GAGTAILTLLGGFHPQTQSLW
Sbjct: 245 GTPQGAGTAILTLLGGFHPQTQSLW 269

[Close]

BLAST of CmUC11G209730 vs. ExPASy Swiss-Prot
Match: Q8S8X5 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Atropa belladonna OX=33113 GN=psaB PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.0e-06
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 66  GSPEGAGTAILTLLGGFHPQTQSLW 91
           G+ EGAGTAILTLLGGFHPQTQSLW
Sbjct: 245 GTAEGAGTAILTLLGGFHPQTQSLW 269

[Close]

BLAST of CmUC11G209730 vs. ExPASy Swiss-Prot
Match: Q4VZN4 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Cucumis sativus OX=3659 GN=psaB PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.0e-06
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 66  GSPEGAGTAILTLLGGFHPQTQSLW 91
           G+ EGAGTAILTLLGGFHPQTQSLW
Sbjct: 245 GTSEGAGTAILTLLGGFHPQTQSLW 269

[Close]

BLAST of CmUC11G209730 vs. ExPASy Swiss-Prot
Match: A6BM24 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Gnetum parvifolium OX=33153 GN=psaB PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.0e-06
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 66  GSPEGAGTAILTLLGGFHPQTQSLW 91
           G+ EGAGTAILTLLGGFHPQTQSLW
Sbjct: 245 GTSEGAGTAILTLLGGFHPQTQSLW 269

[Close]

BLAST of CmUC11G209730 vs. ExPASy TrEMBL
Match: A0A2H4EBQ9 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Burmannia disticha OX=48532 GN=psaB PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.8e-05
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 66  GSPEGAGTAILTLLGGFHPQTQSLW 91
           G+PEGAGTAILTLLGGFHPQTQSLW
Sbjct: 245 GTPEGAGTAILTLLGGFHPQTQSLW 269

[Close]

BLAST of CmUC11G209730 vs. ExPASy TrEMBL
Match: A0A5P8FX94 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Valeriana officinalis OX=19953 GN=psaB PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.8e-05
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 66  GSPEGAGTAILTLLGGFHPQTQSLW 91
           G+PEGAGTAILTLLGGFHPQTQSLW
Sbjct: 245 GTPEGAGTAILTLLGGFHPQTQSLW 269

[Close]

BLAST of CmUC11G209730 vs. ExPASy TrEMBL
Match: A0A6B7EPS9 (Photosystem I (Fragment) OS=Valeriana flaccidissima OX=300905 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.8e-05
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 66  GSPEGAGTAILTLLGGFHPQTQSLW 91
           G+PEGAGTAILTLLGGFHPQTQSLW
Sbjct: 245 GTPEGAGTAILTLLGGFHPQTQSLW 269

[Close]

BLAST of CmUC11G209730 vs. ExPASy TrEMBL
Match: A0A6B7EKY9 (Photosystem I (Fragment) OS=Valeriana jatamansi OX=59170 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.8e-05
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 66  GSPEGAGTAILTLLGGFHPQTQSLW 91
           G+PEGAGTAILTLLGGFHPQTQSLW
Sbjct: 245 GTPEGAGTAILTLLGGFHPQTQSLW 269

[Close]

BLAST of CmUC11G209730 vs. ExPASy TrEMBL
Match: A0A1Z1MTA9 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Kapraunia schneideri OX=717899 GN=psaB PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-04
Identity = 37/84 (44.05%), Postives = 43/84 (51.19%), Query Frame = 0


Query: 12  HFFHFIGPYFLFQHIALNG----LPAFHSLL-IDTSRNYKQLSRPDQLDVLCFQIKSSIG 71
           H  H   P    QH+  N     LP    L    T R ++  ++PD L       K   G
Sbjct: 193 HLVHIAIPESRGQHVRWNNFTEILPHPEGLTPFFTGRWFEYANKPDTL-------KHIFG 252

Query: 72  SPEGAGTAILTLLGGFHPQTQSLW 91
           S EG+GTAILT LGGFHPQTQSLW
Sbjct: 253 SDEGSGTAILTFLGGFHPQTQSLW 269

[Close]

BLAST of CmUC11G209730 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 50.8 bits (120), Expect = 7.2e-07
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 66  GSPEGAGTAILTLLGGFHPQTQSLW 91
           G+ +G+GTAILTLLGGFHPQTQSLW
Sbjct: 245 GTSQGSGTAILTLLGGFHPQTQSLW 269

The following BLAST results are available for this feature:

BLAST of CmUC11G209730 vs. NCBI nr


Match Name	E-value	Identity	Description
QRI59917.1	1.8e-04	96.00	photosystem I P700 chlorophyll a apoprotein A2 [Derris harrowiana]	[more]
YP_009705506.1	1.8e-04	96.00	photosystem I P700 apoprotein A2 [Valeriana officinalis] >QAU08321.1 PsaB, parti...	[more]
QRI60912.1	1.8e-04	96.00	photosystem I P700 chlorophyll a apoprotein A2 [Psophocarpus tetragonolobus]	[more]
YP_009449973.1	1.8e-04	96.00	photosystem I P700 apoprotein A2 [Burmannia disticha] >ANK36170.1 photosystem I ...	[more]
YP_009399338.1	2.4e-04	44.05	photosystem I P700 apoprotein A2 [Kapraunia schneideri] >ARW68944.1 photosystem ...	[more]

BLAST of CmUC11G209730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4GG98	5.3e-07	92.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=Phaseolus vulgaris OX=3885 GN=...	[more]
Q2PMU2	5.3e-07	92.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=Glycine max OX=3847 GN=psaB PE...	[more]
Q8S8X5	2.0e-06	92.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=Atropa belladonna OX=33113 GN=...	[more]
Q4VZN4	2.0e-06	92.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=Cucumis sativus OX=3659 GN=psa...	[more]
A6BM24	2.0e-06	92.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=Gnetum parvifolium OX=33153 GN...	[more]

BLAST of CmUC11G209730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2H4EBQ9	8.8e-05	96.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=Burmannia disticha OX=48532 GN...	[more]
A0A5P8FX94	8.8e-05	96.00	Photosystem I P700 chlorophyll a apoprotein A2 OS=Valeriana officinalis OX=19953...	[more]
A0A6B7EPS9	8.8e-05	96.00	Photosystem I (Fragment) OS=Valeriana flaccidissima OX=300905 PE=3 SV=1	[more]
A0A6B7EKY9	8.8e-05	96.00	Photosystem I (Fragment) OS=Valeriana jatamansi OX=59170 PE=3 SV=1	[more]
A0A1Z1MTA9	1.2e-04	44.05	Photosystem I P700 chlorophyll a apoprotein A2 OS=Kapraunia schneideri OX=717899...	[more]

BLAST of CmUC11G209730 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00340.1	7.2e-07	84.00	Photosystem I, PsaA/PsaB protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC11G209730.1	CmUC11G209730.1	mRNA