CmUC11G208170 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC11G208170
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	glycine-rich RNA-binding protein-like
Location	CmU531Chr11: 4554956 .. 4556158 (-)
RNA-Seq Expression	CmUC11G208170
Synteny	CmUC11G208170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTCCCCATTTCATTCTGCTCTTGTTTAGAGGTTGGGATTTGTGTTGATTCACCTCTTTCTCTCTAAATCTTTTCCTTTTTAGGGTTAGGGTTTTCCGTTCTGATTCAATGGCTTCCTCTTCTGTTGAGTACCGTTGCTTTGTGGGTGGCCTTGCTTGGGCCACTGATAGTAATGCCTTAGAGAAGGCTTTCTCTCCATTTGGCGATATCGTTGAAGCCAAGGTCCGTTTGTCGTCGAGATCTGGATTTGTTCCGAATCGGCTTTCTCCATCCTTAATCTGATCTGTGACTCTGTGACTCTCATCTGTGTTTTGTGTTACTTTACTACTACTACTCTCTTGATATGTGTTACTTTTATTACTCTCCTTTAATCGGTACGTTCACCTTCATCTTTTTTACAGAGACGAAGAACGATCGGTTTCTTTTATTATTATTTTTTTATTTTTTGTTATTGCTGTTGTGACTGTTTTAATTGATGTTGTTTTGTGGCTGATCTCGGTTTTTTCTTGTTGATTCTCCTTCAGATCGTCAACGATCGTGAAACCGGAAGGTCGAGAGGATTTGGTTTCGTTACGTTTGCTGAGGAGGAGGCGATGAGAAGTGCTATTGAAGCAATGAACGGCCAGAATCTTGACGGTCGTAGTATTACCGTCAACGAGGCGCAGCAAAGAGGTGGAGGTGGCGGCGGTGGTTACAGCCGCGGTGGTGGTGGTGGTGGAGGTGGATACGGTGGACGCCGTGAAGGAGGAGGCGGTGGTGGTTACAGCCGTGGAGGCGGTGGTTACGGTGGAGGAGGAGGTGGATACGGAGGAGGTGGTTACGGTGGTGGACGTGACCGTGGCTACGGTGGTGGTGGTGGTGATGGTGGATCTCGTTACTCCAGGGGTGGCGGCGGTGGATCTGAAGGAGGATGGAGAAATTAGGCCGGCTTTTATGAGTTTTTAGCTTTTGGTTTCGAAGTATTAGTGTGGTGAAGGAAAAATCTTAGCAGGATCTCTTTTTCGTTTTCATTTTGTGGCTCTGTTTACTCTGTTCCGTTTGGGTGCTCTCTTTTTTGACCGATTACCGATGGGTTTCGTGTTCCTTATTATCGATCTATGTTACGATGAAAAAAAATTACATAAGAAAATGAAGTACAGCTCTTCGTTCTCGCAAAGTTCTCTTCTTCAAATCTCTATTATCGATTGTTCCGCCATGCCCA

mRNA sequence

TTCTTCCCCATTTCATTCTGCTCTTGTTTAGAGGTTGGGATTTGTGTTGATTCACCTCTTTCTCTCTAAATCTTTTCCTTTTTAGGGTTAGGGTTTTCCGTTCTGATTCAATGGCTTCCTCTTCTGTTGAGTACCGTTGCTTTGTGGGTGGCCTTGCTTGGGCCACTGATAGTAATGCCTTAGAGAAGGCTTTCTCTCCATTTGGCGATATCGTTGAAGCCAAGATCGTCAACGATCGTGAAACCGGAAGGTCGAGAGGATTTGGTTTCGTTACGTTTGCTGAGGAGGAGGCGATGAGAAGTGCTATTGAAGCAATGAACGGCCAGAATCTTGACGGTCGTAGTATTACCGTCAACGAGGCGCAGCAAAGAGGTGGAGGTGGCGGCGGTGGTTACAGCCGCGGTGGTGGTGGTGGTGGAGGTGGATACGGTGGACGCCGTGAAGGAGGAGGCGGTGGTGGTTACAGCCGTGGAGGCGGTGGTTACGGTGGAGGAGGAGGTGGATACGGAGGAGGTGGTTACGGTGGTGGACGTGACCGTGGCTACGGTGGTGGTGGTGGTGATGGTGGATCTCGTTACTCCAGGGGTGGCGGCGGTGGATCTGAAGGAGGATGGAGAAATTAGGCCGGCTTTTATGAGTTTTTAGCTTTTGGTTTCGAAGTATTAGTGTGGTGAAGGAAAAATCTTAGCAGGATCTCTTTTTCGTTTTCATTTTGTGGCTCTGTTTACTCTGTTCCGTTTGGGTGCTCTCTTTTTTGACCGATTACCGATGGGTTTCGTGTTCCTTATTATCGATCTATGTTACGATGAAAAAAAATTACATAAGAAAATGAAGTACAGCTCTTCGTTCTCGCAAAGTTCTCTTCTTCAAATCTCTATTATCGATTGTTCCGCCATGCCCA

Coding sequence (CDS)

ATGGCTTCCTCTTCTGTTGAGTACCGTTGCTTTGTGGGTGGCCTTGCTTGGGCCACTGATAGTAATGCCTTAGAGAAGGCTTTCTCTCCATTTGGCGATATCGTTGAAGCCAAGATCGTCAACGATCGTGAAACCGGAAGGTCGAGAGGATTTGGTTTCGTTACGTTTGCTGAGGAGGAGGCGATGAGAAGTGCTATTGAAGCAATGAACGGCCAGAATCTTGACGGTCGTAGTATTACCGTCAACGAGGCGCAGCAAAGAGGTGGAGGTGGCGGCGGTGGTTACAGCCGCGGTGGTGGTGGTGGTGGAGGTGGATACGGTGGACGCCGTGAAGGAGGAGGCGGTGGTGGTTACAGCCGTGGAGGCGGTGGTTACGGTGGAGGAGGAGGTGGATACGGAGGAGGTGGTTACGGTGGTGGACGTGACCGTGGCTACGGTGGTGGTGGTGGTGATGGTGGATCTCGTTACTCCAGGGGTGGCGGCGGTGGATCTGAAGGAGGATGGAGAAATTAG

Protein sequence

MASSSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEEAMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGGGGGGGGYGGRREGGGGGGYSRGGGGYGGGGGGYGGGGYGGGRDRGYGGGGGDGGSRYSRGGGGGSEGGWRN

Homology

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BLAST of CmUC11G208170 vs. NCBI nr
Match: XP_022943401.1 (glycine-rich RNA-binding protein-like [Cucurbita moschata])

HSP 1 Score: 246.1 bits (627), Expect = 2.1e-61
Identity = 159/174 (91.38%), Postives = 167/174 (95.98%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MASSSVEYRCFVGGLAWATD++ALEKAFS FG+IVEAKIVNDRETGRSRGFGFVTF EE+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGGGGGGGGYGGRREGGGGGGYSR 120
           +MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGY+RGGGGGGGGYGGRREGGGGGGY+R
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNR 120

Query: 121 GGGGYGGGGGGYGGGGYGGGRDRGYGGGGGDGGSRYSR----GGGGGSEGGWRN 171
           GGGGYGGGGGGYGGGGYGGGRDRGY GGGGDGGSRY+R    GGGGGSEGGWRN
Sbjct: 121 GGGGYGGGGGGYGGGGYGGGRDRGY-GGGGDGGSRYNRGGGGGGGGGSEGGWRN 173

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BLAST of CmUC11G208170 vs. NCBI nr
Match: KAG6571119.1 (hypothetical protein SDJN03_30034, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 242.3 bits (617), Expect = 3.1e-60
Identity = 159/173 (91.91%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MASSSVEYRCFVGGLAWATD++ALEKAFS FG+IVEAKIVNDRETGRSRGFGFVTF EE+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGGGGGGGGYGGRRE-GGGGGGYS 120
           +MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGY+RGGGGGGGGYGGRRE GGGGGGY+
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGGYN 120

Query: 121 RGGGGYGGGGGGYGGGGYGGGRDRGYGGGGGDGGSRYSR--GGGGGSEGGWRN 171
           RGGGGYGGGGGGYGGGGYGGGRDRGY GGGGDGGSRY+R  GGGGGSEGGWRN
Sbjct: 121 RGGGGYGGGGGGYGGGGYGGGRDRGY-GGGGDGGSRYNRGGGGGGGSEGGWRN 172

[Close]

BLAST of CmUC11G208170 vs. NCBI nr
Match: XP_038901242.1 (glycine-rich RNA-binding protein-like [Benincasa hispida])

HSP 1 Score: 238.4 bits (607), Expect = 4.5e-59
Identity = 158/171 (92.40%), Postives = 161/171 (94.15%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MASSSVE+RCFVGGLAWATD+ ALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEE
Sbjct: 1   MASSSVEFRCFVGGLAWATDNIALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGGGGGGGGYGGRREGGGGGGYSR 120
           AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGG    GGGGGGGYGGRREGGGGGGY+R
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGGYNR 120

Query: 121 GGGGYGGGGGGYGGGGYGGGRDRGYGGGGGDGGSRYSR-GGGGGSEGGWRN 171
           G GGY  GGGGYGGGGYGGGRDR YGGGGGDGGSRYSR GGGGGSEGGWRN
Sbjct: 121 GSGGY--GGGGYGGGGYGGGRDRSYGGGGGDGGSRYSRGGGGGGSEGGWRN 169

[Close]

BLAST of CmUC11G208170 vs. NCBI nr
Match: XP_022986624.1 (glycine-rich RNA-binding protein-like [Cucurbita maxima])

HSP 1 Score: 236.1 bits (601), Expect = 2.2e-58
Identity = 157/174 (90.23%), Postives = 165/174 (94.83%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MASSSVEYRCFVGGLAWATD++ALEKAFS FG+IVEAKIVNDRETGRSRGFGFVTF EE+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSR--GGGGGGGGYGGRREGGGGGGY 120
           +MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGY+R  GGGGGGGGYGGRRE GGGGGY
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGGGYGGRRE-GGGGGY 120

Query: 121 SRGGGGY--GGGGGGYGGGGYGGGRDRGYGGGGGDGGSRYSRGGGGGSEGGWRN 171
           +RGGGGY  GGGGGGYGGGGYGGGRDRGY  GGGDGGSRY+RGGGGGSEGGWRN
Sbjct: 121 NRGGGGYGSGGGGGGYGGGGYGGGRDRGY--GGGDGGSRYNRGGGGGSEGGWRN 171

[Close]

BLAST of CmUC11G208170 vs. NCBI nr
Match: XP_023512522.1 (glycine-rich RNA-binding protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233.8 bits (595), Expect = 1.1e-57
Identity = 158/173 (91.33%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MASSSVEYRCFVGGLAWATD++ALEKAFS FG+IVEAKIVNDRETGRSRGFGFVTFAEEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFAEEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGGGGGGGGYGGRREGGGGGGYSR 120
           +MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGY+R GGGGGGGYGGRRE GGGGGY+R
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNR-GGGGGGGYGGRRE-GGGGGYNR 120

Query: 121 GGGGYGGGGGGYGGGGY-GGGRDRGYGGGGGDGGSRYSR--GGGGGSEGGWRN 171
           GGGGYGGGGGGYGGGGY GGGRDRGY  GGGDGGSRY+R  GGGGGSEGGWRN
Sbjct: 121 GGGGYGGGGGGYGGGGYGGGGRDRGY--GGGDGGSRYNRGGGGGGGSEGGWRN 169

[Close]

BLAST of CmUC11G208170 vs. ExPASy Swiss-Prot
Match: Q03878 (Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.9e-38
Identity = 117/160 (73.12%), Postives = 129/160 (80.62%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEEAMR 63
           + VEYRCFVGGLAWAT+  +LE+AFS FGDI ++KI+NDRETGRSRGFGFVTF +E++MR
Sbjct: 2   AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGGG---GGGGGYGGRREGGGGGGY-- 123
            AIE MNGQ LDGR+ITVNEAQ RG GGGGG   GGG   GGGGGYGGRREGGGGGGY  
Sbjct: 62  DAIEGMNGQELDGRNITVNEAQSRGSGGGGGRREGGGGGYGGGGGYGGRREGGGGGGYGG 121

Query: 124 --SRGGGGYGGGGGGYGGGGYGGGRDRGYGGGGGDGGSRY 157
               GGGGYGGGGGGYGG   GG  D GYGGGG  GGSR+
Sbjct: 122 RREGGGGGYGGGGGGYGGRREGG--DGGYGGGG--GGSRW 157

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BLAST of CmUC11G208170 vs. ExPASy Swiss-Prot
Match: Q03250 (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.2e-36
Identity = 120/175 (68.57%), Postives = 133/175 (76.00%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MAS  VEYRCFVGGLAWATD  ALE AF+ +GD++++KI+NDRETGRSRGFGFVTF +E+
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGGG-----GGGGGY-GGRREGGG 120
           AM+ AIE MNGQ+LDGRSITVNEAQ RG GGGGG+  GGG     GGGGGY GG    GG
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 GGGYSRGGGGYGGGGGGY-----GGGGYGGGRDRGYGG-GGGDGGSRYSRGGGGG 164
           GGG   GGGGY GGGGGY     GGG YGGGR  G GG GGG+GG     GGGGG
Sbjct: 121 GGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGGGYGGSGGGGG 175

[Close]

BLAST of CmUC11G208170 vs. ExPASy Swiss-Prot
Match: Q43472 (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.7e-34
Identity = 116/167 (69.46%), Postives = 130/167 (77.84%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEEAMR 63
           + VEYRCFVGGL WATD  +L+ AFS +GD++++KI+ DRETGRSRGFGFVTFA +EAMR
Sbjct: 2   ADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGGGGGGGGYGGRREGGGGGGYSRGGG 123
            AIEAMNGQ+LDGR+ITVNEAQ R   GGGG+    GGGGGGYGG+R  GGGGGY  GGG
Sbjct: 62  QAIEAMNGQDLDGRNITVNEAQSRRSDGGGGF----GGGGGGYGGQRREGGGGGYGGGGG 121

Query: 124 GYGGGGGGYGGGGYGGGRDRGYGG-GGGDGGSRYSRGGGGGSEGGWR 170
           GYGGG  G GGGGY G RD G GG GGG GG   SRGG GG  G WR
Sbjct: 122 GYGGGRSG-GGGGY-GSRDGGGGGYGGGGGGYGGSRGGSGG--GNWR 160

[Close]

BLAST of CmUC11G208170 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-33
Identity = 115/178 (64.61%), Postives = 134/178 (75.28%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MA++ VEYRCFVGGLAWAT++  LE+AF+ FG ++++K++ DRETGRSRGFGFVTF+ E+
Sbjct: 1   MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQ 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGGGGGGGGYGGRREGGGGGGYSR 120
           +M  AIE MNG+ LDGR+ITVN+AQ RGGGGGGG   G GGGGGGYGGR     GGGY  
Sbjct: 61  SMLDAIENMNGKELDGRNITVNQAQSRGGGGGGG---GYGGGGGGYGGRE----GGGYGG 120

Query: 121 GGGGYGG---GGGGYGGGGYGGGRDRGYGGGGGDGGSRYSRGGG-----GGSEGGWRN 171
           GGGGYGG   GGGGYGGGGYGGG   G G GG +GG  Y  GGG     G S G WRN
Sbjct: 121 GGGGYGGRREGGGGYGGGGYGGG---GGGYGGREGGGGYGGGGGYGGNRGDSGGNWRN 168

[Close]

BLAST of CmUC11G208170 vs. ExPASy Swiss-Prot
Match: P49310 (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.4e-33
Identity = 118/170 (69.41%), Postives = 130/170 (76.47%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MAS  VEYRCFVGGLAWATD  ALE AFS +G+++++KI+NDRETGRSRGFGFVTF +E+
Sbjct: 1   MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGGGGGGGGYGGRREGGGGGGYSR 120
           +M+ AIE MNGQ+LDGRSITVNEAQ RG GGGGG  RGGGGG    GG   GGGGGGY  
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGG-GRGGGGGYRSGGGGGYGGGGGGYGG 120

Query: 121 GG--GGYGGGGGGY-----GGGGYGGGRDRGYGGGGGDGGSRYSRGGGGG 164
           GG  GGY GGGGGY     GGGGYGGG  R  G GGG GGS    GGGGG
Sbjct: 121 GGREGGYSGGGGGYSSRGGGGGGYGGGGRRDGGEGGGYGGS----GGGGG 165

[Close]

BLAST of CmUC11G208170 vs. ExPASy TrEMBL
Match: A0A6J1FRL7 (glycine-rich RNA-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448177 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 1.0e-61
Identity = 159/174 (91.38%), Postives = 167/174 (95.98%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MASSSVEYRCFVGGLAWATD++ALEKAFS FG+IVEAKIVNDRETGRSRGFGFVTF EE+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGGGGGGGGYGGRREGGGGGGYSR 120
           +MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGY+RGGGGGGGGYGGRREGGGGGGY+R
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNR 120

Query: 121 GGGGYGGGGGGYGGGGYGGGRDRGYGGGGGDGGSRYSR----GGGGGSEGGWRN 171
           GGGGYGGGGGGYGGGGYGGGRDRGY GGGGDGGSRY+R    GGGGGSEGGWRN
Sbjct: 121 GGGGYGGGGGGYGGGGYGGGRDRGY-GGGGDGGSRYNRGGGGGGGGGSEGGWRN 173

[Close]

BLAST of CmUC11G208170 vs. ExPASy TrEMBL
Match: A0A6J1JGK0 (glycine-rich RNA-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111484309 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.1e-58
Identity = 157/174 (90.23%), Postives = 165/174 (94.83%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MASSSVEYRCFVGGLAWATD++ALEKAFS FG+IVEAKIVNDRETGRSRGFGFVTF EE+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSR--GGGGGGGGYGGRREGGGGGGY 120
           +MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGY+R  GGGGGGGGYGGRRE GGGGGY
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGGGYGGRRE-GGGGGY 120

Query: 121 SRGGGGY--GGGGGGYGGGGYGGGRDRGYGGGGGDGGSRYSRGGGGGSEGGWRN 171
           +RGGGGY  GGGGGGYGGGGYGGGRDRGY  GGGDGGSRY+RGGGGGSEGGWRN
Sbjct: 121 NRGGGGYGSGGGGGGYGGGGYGGGRDRGY--GGGDGGSRYNRGGGGGSEGGWRN 171

[Close]

BLAST of CmUC11G208170 vs. ExPASy TrEMBL
Match: A0A6J1L652 (glycine-rich RNA-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499534 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 3.4e-57
Identity = 157/175 (89.71%), Postives = 163/175 (93.14%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MASSSVEYRCFVGGLAWATD++ALEKAFS FG+IVEAKIVNDRETGRSRGFGFVTF +EE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQR--GGGGGGGYSRGGGGGGGGYGGRREGGGGGGY 120
           AMRSAIEAMNGQNLDGRSITVNEAQQR  GGGGGGGY+R GGGGGGGYGGRREGGGGGGY
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNR-GGGGGGGYGGRREGGGGGGY 120

Query: 121 SRGGGGYGGGGGGY-GGGGYGGGRDRGYGGGGGDGGSRYSR--GGGGGSEGGWRN 171
           +RGGGGYGGGGGGY GGGGYGGGRDRGYGGGGG  G RY R  GGGGGSEGGWRN
Sbjct: 121 NRGGGGYGGGGGGYGGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 174

[Close]

BLAST of CmUC11G208170 vs. ExPASy TrEMBL
Match: A0A6J1G631 (glycine-rich RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451139 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 3.4e-57
Identity = 154/172 (89.53%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MASSSVEYRCFVGGLAWATD++ALEKAFS FG+IVEAKIVNDRETGRSRGFGFVTF +EE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGGGGGGGGYGGRREGGGGGGYSR 120
           AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGG    GGGGGGGYGGRRE GGGGGY+R
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRRE-GGGGGYNR 120

Query: 121 GGGGYGGGGGGYGGGGYGGGRDRGYGGGGGDGGSRYSR--GGGGGSEGGWRN 171
           GGGGYGGGGGGYGGGGYGGGRDRGYGGGGG  G RY R  GGGGGSEGGWRN
Sbjct: 121 GGGGYGGGGGGYGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 171

[Close]

BLAST of CmUC11G208170 vs. ExPASy TrEMBL
Match: A0A1S3CE16 (glycine-rich RNA-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103499671 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.2e-54
Identity = 155/174 (89.08%), Postives = 162/174 (93.10%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MASSSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIV+DRETGRSRGFGFVTF+EE+
Sbjct: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVSDRETGRSRGFGFVTFSEED 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGG--GGGGGGYGGRREGGGGGGY 120
           AMRSAIEAMNG  LDGR+ITVNEAQQRGGGGGGG   GG  GGGGGGYGGRR+GGGGGG+
Sbjct: 61  AMRSAIEAMNGHILDGRNITVNEAQQRGGGGGGG---GGYRGGGGGGYGGRRDGGGGGGF 120

Query: 121 SRGGGGYGGGGGGY-GGGGYGGGRDRGYGGGGGDGGSRYSR-GGGGGSEGGWRN 171
           SRGGGGYGGGGGGY GGGGYGGGRDRGYGGGGG GG R +R GGGGGSEGGWRN
Sbjct: 121 SRGGGGYGGGGGGYGGGGGYGGGRDRGYGGGGGYGGGRDNRGGGGGGSEGGWRN 171

[Close]

BLAST of CmUC11G208170 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 152.5 bits (384), Expect = 3.0e-37
Identity = 120/175 (68.57%), Postives = 133/175 (76.00%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MAS  VEYRCFVGGLAWATD  ALE AF+ +GD++++KI+NDRETGRSRGFGFVTF +E+
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGGG-----GGGGGY-GGRREGGG 120
           AM+ AIE MNGQ+LDGRSITVNEAQ RG GGGGG+  GGG     GGGGGY GG    GG
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 GGGYSRGGGGYGGGGGGY-----GGGGYGGGRDRGYGG-GGGDGGSRYSRGGGGG 164
           GGG   GGGGY GGGGGY     GGG YGGGR  G GG GGG+GG     GGGGG
Sbjct: 121 GGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGGGYGGSGGGGG 175

[Close]

BLAST of CmUC11G208170 vs. TAIR 10
Match: AT2G21660.2 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-36
Identity = 118/164 (71.95%), Postives = 131/164 (79.88%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MAS  VEYRCFVGGLAWATD  ALE AF+ +GD++++KI+NDRETGRSRGFGFVTF +E+
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGGGGGGGGYGGRREGGGGGGYSR 120
           AM+ AIE MNGQ+LDGRSITVNEAQ RG GGGGG+ RGGG  GGG GGRRE  GGGGYS 
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGH-RGGGSYGGG-GGRRE--GGGGYSG 120

Query: 121 GGGGYGGGGGGYGGGGYGGGRDRGYGG-GGGDGGSRYSRGGGGG 164
           GGGGY   GG  GGG YGGGR  G GG GGG+GG     GGGGG
Sbjct: 121 GGGGYSSRGG--GGGSYGGGRREGGGGYGGGEGGGYGGSGGGGG 158

[Close]

BLAST of CmUC11G208170 vs. TAIR 10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 136.7 bits (343), Expect = 1.7e-32
Identity = 112/168 (66.67%), Postives = 124/168 (73.81%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEEAMR 63
           S VEYRCFVGGLAWAT+   L++ FS FGD++++KI+NDRE+GRSRGFGFVTF +E+AMR
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRG--------GGGGGGYSRGGGGG-GGGYGGRREGGG 123
            AIE MNG+ LDGR ITVNEAQ RG        GG GGGY  GGGGG  GG GG   GGG
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGG 121

Query: 124 GGGYSRGGGGYGGGGGGYGGGGYGGGRDRGYGGGGGDGGSRYSRGGGG 163
           GGGY R  GGYG GGGG G G  GGGR  G G GGGDGGS Y  GGGG
Sbjct: 122 GGGYERRSGGYGSGGGGGGRGYGGGGRREGGGYGGGDGGS-YGGGGGG 168

[Close]

BLAST of CmUC11G208170 vs. TAIR 10
Match: AT4G39260.2 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 132.1 bits (331), Expect = 4.2e-31
Identity = 93/137 (67.88%), Postives = 105/137 (76.64%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEEAMR 63
           S VEYRCFVGGLAWAT+   L++ FS FGD++++KI+NDRE+GRSRGFGFVTF +E+AMR
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGGGGGGGGYGGRREGGGGGGYSRGGG 123
            AIE MNG+ LDGR ITVNEAQ RG GGGGG   G GG GGGY      GGGGGYS    
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGGGGG---GRGGSGGGY----RSGGGGGYS---- 121

Query: 124 GYGGGGGGYGGGGYGGG 141
             GGGGGGY GGG GGG
Sbjct: 122 --GGGGGGYSGGGGGGG 125

[Close]

BLAST of CmUC11G208170 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 89.0 bits (219), Expect = 4.1e-18
Identity = 90/171 (52.63%), Postives = 113/171 (66.08%), Query Frame = 0


Query: 9   RCFVGGLAWATDSNALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEEAMRSAIEA 68
           + F+GG+A++ D ++L +AF+ +G++V+ +++ DRETGRSRGFGFVTF   EA  SAI+A
Sbjct: 41  KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100

Query: 69  MNGQNLDGRSITVNEAQQR---GGGGGGGYSRGGGGGGGGYGGRREGGGGGGYSRGGGGY 128
           ++G++L GR + VN A  R   GG GGGGY    GGGGGGYGG    GGG G   G GGY
Sbjct: 101 LDGRDLHGRVVKVNYANDRTSGGGFGGGGY----GGGGGGYGGSGGYGGGAGGYGGSGGY 160

Query: 129 GGGGGGYG---GGGYGGGRDRGYGGG-----GGDGGSRYSRGGGGGSEGGW 169
           GGG GGYG   GGGYGG    GYGG      GGD       GGG GS GG+
Sbjct: 161 GGGAGGYGGNSGGGYGGNAAGGYGGSGAGGYGGDATGHGGAGGGYGSSGGF 207

The following BLAST results are available for this feature:

BLAST of CmUC11G208170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943401.1	2.1e-61	91.38	glycine-rich RNA-binding protein-like [Cucurbita moschata]	[more]
KAG6571119.1	3.1e-60	91.91	hypothetical protein SDJN03_30034, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038901242.1	4.5e-59	92.40	glycine-rich RNA-binding protein-like [Benincasa hispida]	[more]
XP_022986624.1	2.2e-58	90.23	glycine-rich RNA-binding protein-like [Cucurbita maxima]	[more]
XP_023512522.1	1.1e-57	91.33	glycine-rich RNA-binding protein 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmUC11G208170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q03878	5.9e-38	73.13	Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1	[more]
Q03250	4.2e-36	68.57	Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 ...	[more]
Q43472	6.7e-34	69.46	Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=...	[more]
Q99070	1.1e-33	64.61	Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1	[more]
P49310	4.4e-33	69.41	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]

BLAST of CmUC11G208170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FRL7	1.0e-61	91.38	glycine-rich RNA-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448...	[more]
A0A6J1JGK0	1.1e-58	90.23	glycine-rich RNA-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC11148430...	[more]
A0A6J1L652	3.4e-57	89.71	glycine-rich RNA-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1G631	3.4e-57	89.53	glycine-rich RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A1S3CE16	1.2e-54	89.08	glycine-rich RNA-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103499671 ...	[more]

BLAST of CmUC11G208170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21660.1	3.0e-37	68.57	cold, circadian rhythm, and rna binding 2	[more]
AT2G21660.2	1.1e-36	71.95	cold, circadian rhythm, and rna binding 2	[more]
AT4G39260.1	1.7e-32	66.67	cold, circadian rhythm, and RNA binding 1	[more]
AT4G39260.2	4.2e-31	67.88	cold, circadian rhythm, and RNA binding 1	[more]
AT5G61030.1	4.1e-18	52.63	glycine-rich RNA-binding protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..82 e-value: 9.0E-29 score: 111.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 11..79 e-value: 1.3E-23 score: 82.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..86 score: 19.80888
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..107 e-value: 2.9E-31 score: 110.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..170
None	No IPR available	PANTHER	PTHR48024:SF22	RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED	coord: 1..170
None	No IPR available	PANTHER	PTHR48024	GEO13361P1-RELATED	coord: 1..170
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC11G208170.1	CmUC11G208170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0006858	extracellular transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:1990428	miRNA transport
biological_process	GO:0050688	regulation of defense response to virus
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005615	extracellular space
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0030126	COPI vesicle coat
molecular_function	GO:0035198	miRNA binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0035197	siRNA binding
molecular_function	GO:0005198	structural molecule activity
molecular_function	GO:0003676	nucleic acid binding