CmUC10G198320 (gene) Watermelon (USVL531) v1

Overview
NameCmUC10G198320
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr10: 30254086 .. 30254424 (-)
RNA-Seq ExpressionCmUC10G198320
SyntenyCmUC10G198320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGAGAACAGTAGTAGAGAGAAGAATGCAAACAAAGGCAATGTCAGCAACGACGGTGGCGACATACATTCTCCGGCGGTGTCGTTGCTGTCGGAGGAGATATCGAGAGGGGAAAATGAAGTTTTTCTGAAGATGAAAAAGAGAAAGAGATCAGAGAGTGAAGAAGAAAGTCCAAGATTCAGAAAAGAAACCAAAAAGATTGAAAAAGAAGAAAATAAATCAGAAATGGAGTGGGTCCCAGGGATGAACATTCCAGGACCAATACCTAATCTTTTTGCCATTATTCAAGAGCAATTCAATCTTCATACTATCTTGGATGATCCACGTCTTCATTGA

mRNA sequence

ATGAATGAGAACAGTAGTAGAGAGAAGAATGCAAACAAAGGCAATGTCAGCAACGACGGTGGCGACATACATTCTCCGGCGGTGTCGTTGCTGTCGGAGGAGATATCGAGAGGGGAAAATGAAGTTTTTCTGAAGATGAAAAAGAGAAAGAGATCAGAGAGTGAAGAAGAAAGTCCAAGATTCAGAAAAGAAACCAAAAAGATTGAAAAAGAAGAAAATAAATCAGAAATGGAGTGGGTCCCAGGGATGAACATTCCAGGACCAATACCTAATCTTTTTGCCATTATTCAAGAGCAATTCAATCTTCATACTATCTTGGATGATCCACGTCTTCATTGA

Coding sequence (CDS)

ATGAATGAGAACAGTAGTAGAGAGAAGAATGCAAACAAAGGCAATGTCAGCAACGACGGTGGCGACATACATTCTCCGGCGGTGTCGTTGCTGTCGGAGGAGATATCGAGAGGGGAAAATGAAGTTTTTCTGAAGATGAAAAAGAGAAAGAGATCAGAGAGTGAAGAAGAAAGTCCAAGATTCAGAAAAGAAACCAAAAAGATTGAAAAAGAAGAAAATAAATCAGAAATGGAGTGGGTCCCAGGGATGAACATTCCAGGACCAATACCTAATCTTTTTGCCATTATTCAAGAGCAATTCAATCTTCATACTATCTTGGATGATCCACGTCTTCATTGA

Protein sequence

MNENSSREKNANKGNVSNDGGDIHSPAVSLLSEEISRGENEVFLKMKKRKRSESEEESPRFRKETKKIEKEENKSEMEWVPGMNIPGPIPNLFAIIQEQFNLHTILDDPRLH
Homology
[Close]
BLAST of CmUC10G198320 vs. NCBI nr
Match: KGN59339.1 (hypothetical protein Csa_002297 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 2.5e-18
Identity = 63/117 (53.85%), Postives = 82/117 (70.09%), Query Frame = 0 

Query: 8   EKNANKGNVSNDGGDIHSPAVSLLSEE--ISRGENEVFLKMKKRKRSESEEESPR----F 67
           +K+AN GN+ ND GD++SP +S LSEE  +S GEN+V  KM+KR +SE ++ESPR     
Sbjct: 125 KKSANNGNIGND-GDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSE-DQESPRIIISI 184

Query: 68  RKETKKIEKEENKSEME-------WVPGMNIPGPIPNLFAIIQEQFNLHTILDDPRL 112
            +  KK EKEE K  +E       W+PG+ IPGPIP++  IIQ+QFNLHTILDDP L
Sbjct: 185 TESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFL 239

[Close]
BLAST of CmUC10G198320 vs. NCBI nr
Match: TYK25435.1 (hypothetical protein E5676_scaffold352G005790 [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 6.2e-17
Identity = 63/122 (51.64%), Postives = 82/122 (67.21%), Query Frame = 0 

Query: 1   MNENSSREKNANKGNVSNDGGDIHSPAVSLLSEE-ISRGENEVFLKMKKRKRSESEEESP 60
           + ++ +++ + NKG+VSND  D+ SP +S LSE  IS GEN+V  KM+KR  SE ++ESP
Sbjct: 179 LGKDITKKISTNKGHVSNDAKDVDSPTLSSLSEVLISEGENDVLQKMQKRLESE-DQESP 238

Query: 61  R---FRKETKKIEKEENKSEME-------WVPGMNIPGPIPNLFAIIQEQFNLHTILDDP 112
           R     +  KK EKEE K  +E       WVPG+ IPGPIP+L  II +QFNLHTILDDP
Sbjct: 239 RIITISESKKKSEKEETKESLENNSEIMGWVPGIEIPGPIPDLDPIIHQQFNLHTILDDP 298

[Close]
BLAST of CmUC10G198320 vs. ExPASy TrEMBL
Match: A0A0A0LEJ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G812110 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.2e-18
Identity = 63/117 (53.85%), Postives = 82/117 (70.09%), Query Frame = 0 

Query: 8   EKNANKGNVSNDGGDIHSPAVSLLSEE--ISRGENEVFLKMKKRKRSESEEESPR----F 67
           +K+AN GN+ ND GD++SP +S LSEE  +S GEN+V  KM+KR +SE ++ESPR     
Sbjct: 125 KKSANNGNIGND-GDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSE-DQESPRIIISI 184

Query: 68  RKETKKIEKEENKSEME-------WVPGMNIPGPIPNLFAIIQEQFNLHTILDDPRL 112
            +  KK EKEE K  +E       W+PG+ IPGPIP++  IIQ+QFNLHTILDDP L
Sbjct: 185 TESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFL 239

[Close]
BLAST of CmUC10G198320 vs. ExPASy TrEMBL
Match: A0A5D3DPL9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005790 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.0e-17
Identity = 63/122 (51.64%), Postives = 82/122 (67.21%), Query Frame = 0 

Query: 1   MNENSSREKNANKGNVSNDGGDIHSPAVSLLSEE-ISRGENEVFLKMKKRKRSESEEESP 60
           + ++ +++ + NKG+VSND  D+ SP +S LSE  IS GEN+V  KM+KR  SE ++ESP
Sbjct: 179 LGKDITKKISTNKGHVSNDAKDVDSPTLSSLSEVLISEGENDVLQKMQKRLESE-DQESP 238

Query: 61  R---FRKETKKIEKEENKSEME-------WVPGMNIPGPIPNLFAIIQEQFNLHTILDDP 112
           R     +  KK EKEE K  +E       WVPG+ IPGPIP+L  II +QFNLHTILDDP
Sbjct: 239 RIITISESKKKSEKEETKESLENNSEIMGWVPGIEIPGPIPDLDPIIHQQFNLHTILDDP 298

The following BLAST results are available for this feature:
BLAST of CmUC10G198320 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59339.12.5e-1853.85hypothetical protein Csa_002297 [Cucumis sativus][more]
TYK25435.16.2e-1751.64hypothetical protein E5676_scaffold352G005790 [Cucumis melo var. makuwa][more]
BLAST of CmUC10G198320 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC10G198320 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LEJ71.2e-1853.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G812110 PE=4 SV=1[more]
A0A5D3DPL93.0e-1751.64Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CmUC10G198320 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC10G198320.1CmUC10G198320.1mRNA