CmUC10G193560 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC10G193560
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	RNA polymerase sigma factor sigD
Location	CmU531Chr10: 24687587 .. 24691032 (+)
RNA-Seq Expression	CmUC10G193560
Synteny	CmUC10G193560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACTACCAGCAGCTTATGTTCATTACCGACTCAATCCCCAACTCTCCCATCCATTTCTCTCTCCTCACTTCCATCGCTCAAAACCCATCTTCCCCAACAACCCCATTTCCCCTTTCCCCCTTTCTCCACCAAATTAGGCTCCAACTTCATCAGCAATGACACATTAACCCTTCCACCGCCGCCGGAGGCGGCTGTTCTGGCGGTAGAAGCGGCGAGAGAACATGTTCTGGTGGAAGCAAGAGGGTTTTCTGAAGATTGGAGCTGCAAAAACCTTGAGAGAATGGAGGAGAGTTGTGGAGGTGATGGTACTGTGGCGTGGAAGAAGAAGAGAAGGAAAAGGAGGAAAGAAGTGGGGGTGAAAGCTGAGGAAAATTGGGTTGCCTTGTCCAGTGGTCCCTTGAGACCTGGATATTTGAGCTCAAAAGAAGAAGCAGAGCTTTGTCTTTGTCTAAAGGTGGGTTTTACTAAAGATTTAATGAGTTTTTTTTTGTCCTTGTCTGTGCCACATTGCCACCATTTACTTCTTTAGGGAGCTTAATTGAGGATCACATATATTTGTATGCAAAACACTGCAAAACTCTCTTCCTCTCATCTTTGTTAATACGTGCATGTATATATTTTGATAGGTATGTTAATTGGGATAAGGATACATTAGTAATTAGTTAAAGAGTTTGTTATGCTTGTTGGCGAAGGTTGAGGAATGAAGAAGATAAGCAATATTTTGTGGAATAATTAGGAGATAAGCAATAGATTGGGAAGGTCCAAGTACCTGAATTCATGGTTTATCTTGTCGTTTGGTTACTTTTATCTTTCAACACATTTCTATCCTATTTCTTCTTACAGCTTTTAAGGTGTCCTAGTGGAAGAGGAAAGAAGGATTTCTTCTTATTGGGTTGTGGTTTGCGTTAGTCTTAAATGCTAGAACTTCAAGTACTTCGTTTTGTTCGCCAATTTTTTGTTTACACCTGGTTTGCTTAGATTGTTGTTAAGTATTCACATTGTATGCCAAACTCAATGTAAGTGGCTTAGAATACAAGTTTGTATTCTTGAGAGAGGTCAAAACAAAAATGACAGTGTAGAAGTTGAGGGACCAAGATAAAATCAAGTCTTTTGCACCAATATCCTTTAAGATCATGTAAGATTGTCTGCCATGTTAATATATAAAGGAAAGCTTCTGCATATCATAAACTCTTCACAGGAGGCAGCACAGCTTGAAAAGGCAAAAACTAGAATCATGGAAACTCAAGAGCATGAACCTACAAATAAGCAATTAGCCATTGCCCTGGGCACCAAATTAGGGAGTATAGATAGAATTCTTTGTAGAGCAAGAGAATCAAGAGATCGACTCATTCGATGCTATAGCAAACTAGTCATTTCAATTGCTGCTCCATATCAAGGCAAAGGGTTAAGCCTTCAAGACCTGACTCAGGTAGGTTGTTGCGCATTTTACCTCTTTTGGATTGTTGTTTTCTGTAGTTTGTTTAAACGGTTTGTTTGTTTTCGTAGGAAGGGAACATTGGTCTTCTTAAAGGAGCAGAAAGATTTGAACCAAATAGAGGACATAAGTTATCCACTTATGCTTATTGGTGGATAAGACAAGCTATAATTCGAGCTTTGGATAAAAATTCAAGACTTGTTAGACTGCCGGTAAGATACTGCCTCGATTTCTCATTTGTCAAATTCCAATGCTTTATGCATTTTGCATTCAAAAAGAAGAAAAAAAAATATAATGATCATATAGAAGGTGTAGAGAAGAAGTTTCAAATCATATTTAGTTTTTGAGGCAAAATTTTCATTTGTAGTATTAGCTCTTCTGGATGCATTGAAAATAAGAACACAATCTGTATCCTGTTCGGTTAGAAAGCACTCATCTTAGGCTAGGCTCTCATGTTTATTGGTAGGTTTTAGTGACAAAGCTTTTTTGTGATTACCCATTGGGCCTTTTTACTTGATTGGAGCCCTTTTTGTGGTTGGCCTCCTTTCGTGGACTCTCTTTTTTGTATGCACTTATATTATTTCACTTTTCTCAATGAAAGTTCAGTTGAAAAGAAAAACCAACTTAATGAGCAGCAAACTAAGTTGGATTTATGACTAGACTCATAGAGATCAAGGTGATAAGACCCTTTTGTTATATCACCTTTTCACAAAAATGGGATTAGTAATGATTTTTCAGATCTGTTTTTTGTTTCCATTTCCACAAAGTTTTGTTAGCTGAGGAAATTTTAAGTATGGGAAAGTGTGCCGGTAATAACTGAATGCTTGGGTAGCTCGCTGTGTTCAGGGTCACATGGGTCAGATGGTAGCAAGAATAGCAGAAGCAAATAATCATCTCGGCATAAAGTTATCACGACCGCCCACCCACAAGGAAGTTGCTGAATCTCTTAAAGTCCATGTTTCAACAGTAAGACTGGTTACGGAAAGGAGTAAGCGGCCAATTTCAATCAATCAACCATTCAACGACCGAGGTTGCTTAACCCTGCAGGTACTGTTTACAAAGGTCAAGCTTAGTCTTTTACTAGAGGGGATACCCACTTTTTCATTCTTCTCTATATCTATTGTACAATGACAACATCTGCAAGGAATCTCATGTTTGCAACTAGCTTTTGATCTTTGGGAACTGGGATTCAGGCTCTCTTCCATTTGTTCACAAAACTAGTAATCGATGACATTTCCCACATGGTCATCCATAACTAAAGTAATGCTATGTTCTTATGTCCTCTGTTTAATATCTCCAAATGAGAGGTTGAACCAATAAGTTATCTTTTCAATAAGATTGCTACACTTGGGGTTTGCTTATTTCTAATATCAGAAAGAATTAAGTTATAAAGAAGTCTGAGTAATTTTATTAGACAACTGTCTTAATCCTAGGTAGATAGTTACCACGGGAAATAGTAGCTAACTTGTATGGTTACGTTTTTGTTTCAGTGACTAAGGGTGTGTTTGGAATACATTTTCAAATGTTTAATTTAAAAAATAAGTCATTTTGGAAAAAATTGAAGTGTTTGGTAACTACTAAAAATGAATTTTGAAGTGTATTAAACCGTTTTTATCGAAAGAGTTTAAATAAAAATGAGTTCTTTTAAAAACATTTTTTTCTTAAGTCAATCCAAACGGGCCCTAAGATAAGATGTTGAAGTACTTTTTCTTCTCAATGTTCTGCAGGAGATCATGCCTGGACCGGACAATTTGACTCCAGAGAATATGGTAATGAGAAAACTGATGAAGCAAGAACTGAAGAAGCTTCTTAATACTCTTAGCAAACGAGAAGCACATATATTGAGCTTGTACTTTGGCCTCAATGGAGAGATTCCTCGGTCCTTTGAGGAGATAGGCAAGTCATTGAATCTCTCTCGAGAGACGATTCGAAAAATCAATGTCGCCACATTGTCAAAACTAAAGAAGACCGACATTCTAGACTATCTTAAAGATTATCTAGTGTAG

mRNA sequence

ATGGCCACTACCAGCAGCTTATGTTCATTACCGACTCAATCCCCAACTCTCCCATCCATTTCTCTCTCCTCACTTCCATCGCTCAAAACCCATCTTCCCCAACAACCCCATTTCCCCTTTCCCCCTTTCTCCACCAAATTAGGCTCCAACTTCATCAGCAATGACACATTAACCCTTCCACCGCCGCCGGAGGCGGCTGTTCTGGCGGTAGAAGCGGCGAGAGAACATGTTCTGGTGGAAGCAAGAGGGTTTTCTGAAGATTGGAGCTGCAAAAACCTTGAGAGAATGGAGGAGAGTTGTGGAGGTGATGGTACTGTGGCGTGGAAGAAGAAGAGAAGGAAAAGGAGGAAAGAAGTGGGGGTGAAAGCTGAGGAAAATTGGGTTGCCTTGTCCAGTGGTCCCTTGAGACCTGGATATTTGAGCTCAAAAGAAGAAGCAGAGCTTTGTCTTTGTCTAAAGGAGGCAGCACAGCTTGAAAAGGCAAAAACTAGAATCATGGAAACTCAAGAGCATGAACCTACAAATAAGCAATTAGCCATTGCCCTGGGCACCAAATTAGGGAGTATAGATAGAATTCTTTGTAGAGCAAGAGAATCAAGAGATCGACTCATTCGATGCTATAGCAAACTAGTCATTTCAATTGCTGCTCCATATCAAGGCAAAGGGTTAAGCCTTCAAGACCTGACTCAGGAAGGGAACATTGGTCTTCTTAAAGGAGCAGAAAGATTTGAACCAAATAGAGGACATAAGTTATCCACTTATGCTTATTGGTGGATAAGACAAGCTATAATTCGAGCTTTGGATAAAAATTCAAGACTTGTTAGACTGCCGGGTCACATGGGTCAGATGGTAGCAAGAATAGCAGAAGCAAATAATCATCTCGGCATAAAGTTATCACGACCGCCCACCCACAAGGAAGTTGCTGAATCTCTTAAAGTCCATGTTTCAACAGTAAGACTGGTTACGGAAAGGAGTAAGCGGCCAATTTCAATCAATCAACCATTCAACGACCGAGGTTGCTTAACCCTGCAGGAGATCATGCCTGGACCGGACAATTTGACTCCAGAGAATATGGTAATGAGAAAACTGATGAAGCAAGAACTGAAGAAGCTTCTTAATACTCTTAGCAAACGAGAAGCACATATATTGAGCTTGTACTTTGGCCTCAATGGAGAGATTCCTCGGTCCTTTGAGGAGATAGGCAAGTCATTGAATCTCTCTCGAGAGACGATTCGAAAAATCAATGTCGCCACATTGTCAAAACTAAAGAAGACCGACATTCTAGACTATCTTAAAGATTATCTAGTGTAG

Coding sequence (CDS)

ATGGCCACTACCAGCAGCTTATGTTCATTACCGACTCAATCCCCAACTCTCCCATCCATTTCTCTCTCCTCACTTCCATCGCTCAAAACCCATCTTCCCCAACAACCCCATTTCCCCTTTCCCCCTTTCTCCACCAAATTAGGCTCCAACTTCATCAGCAATGACACATTAACCCTTCCACCGCCGCCGGAGGCGGCTGTTCTGGCGGTAGAAGCGGCGAGAGAACATGTTCTGGTGGAAGCAAGAGGGTTTTCTGAAGATTGGAGCTGCAAAAACCTTGAGAGAATGGAGGAGAGTTGTGGAGGTGATGGTACTGTGGCGTGGAAGAAGAAGAGAAGGAAAAGGAGGAAAGAAGTGGGGGTGAAAGCTGAGGAAAATTGGGTTGCCTTGTCCAGTGGTCCCTTGAGACCTGGATATTTGAGCTCAAAAGAAGAAGCAGAGCTTTGTCTTTGTCTAAAGGAGGCAGCACAGCTTGAAAAGGCAAAAACTAGAATCATGGAAACTCAAGAGCATGAACCTACAAATAAGCAATTAGCCATTGCCCTGGGCACCAAATTAGGGAGTATAGATAGAATTCTTTGTAGAGCAAGAGAATCAAGAGATCGACTCATTCGATGCTATAGCAAACTAGTCATTTCAATTGCTGCTCCATATCAAGGCAAAGGGTTAAGCCTTCAAGACCTGACTCAGGAAGGGAACATTGGTCTTCTTAAAGGAGCAGAAAGATTTGAACCAAATAGAGGACATAAGTTATCCACTTATGCTTATTGGTGGATAAGACAAGCTATAATTCGAGCTTTGGATAAAAATTCAAGACTTGTTAGACTGCCGGGTCACATGGGTCAGATGGTAGCAAGAATAGCAGAAGCAAATAATCATCTCGGCATAAAGTTATCACGACCGCCCACCCACAAGGAAGTTGCTGAATCTCTTAAAGTCCATGTTTCAACAGTAAGACTGGTTACGGAAAGGAGTAAGCGGCCAATTTCAATCAATCAACCATTCAACGACCGAGGTTGCTTAACCCTGCAGGAGATCATGCCTGGACCGGACAATTTGACTCCAGAGAATATGGTAATGAGAAAACTGATGAAGCAAGAACTGAAGAAGCTTCTTAATACTCTTAGCAAACGAGAAGCACATATATTGAGCTTGTACTTTGGCCTCAATGGAGAGATTCCTCGGTCCTTTGAGGAGATAGGCAAGTCATTGAATCTCTCTCGAGAGACGATTCGAAAAATCAATGTCGCCACATTGTCAAAACTAAAGAAGACCGACATTCTAGACTATCTTAAAGATTATCTAGTGTAG

Protein sequence

MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLPPPPEAAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGHMGQMVARIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPENMVMRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPRSFEEIGKSLNLSRETIRKINVATLSKLKKTDILDYLKDYLV

Homology

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BLAST of CmUC10G193560 vs. NCBI nr
Match: XP_038906215.1 (RNA polymerase sigma factor sigD, chloroplastic [Benincasa hispida])

HSP 1 Score: 824.7 bits (2129), Expect = 3.7e-235
Identity = 417/436 (95.64%), Postives = 428/436 (98.17%), Query Frame = 0


Query: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
           MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLG+NFI+NDTLTLP
Sbjct: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGTNFINNDTLTLP 60

Query: 61  PPPEAAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVG 120
           PPPEAAVL VEAAREHVLV+ARGFSEDWSCKNLERME SCGGDGTVAWKKKRRKRRKEVG
Sbjct: 61  PPPEAAVLTVEAAREHVLVDARGFSEDWSCKNLERMEGSCGGDGTVAWKKKRRKRRKEVG 120

Query: 121 VKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAI 180
           +KAEENW ALSSGPLRPGYLS KEEAELCLCLKEAAQLE+AKTRIMETQEHEPTN+QLAI
Sbjct: 121 LKAEENWAALSSGPLRPGYLSPKEEAELCLCLKEAAQLEEAKTRIMETQEHEPTNRQLAI 180

Query: 181 ALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240
           ALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA
Sbjct: 181 ALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240

Query: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGHMGQMVARIAEANNHLGIKLSR 300
           ERFEPNRGHKLSTYAYWWIRQAIIRALDK SRLVRLPGHMGQMVARIAEANNHLG+KLSR
Sbjct: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEANNHLGLKLSR 300

Query: 301 PPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPENMVM 360
           PPTHKEVAESLKV VSTVRLVTERSKRPISINQP NDRGCLTLQEIMPGPDNLTPENMVM
Sbjct: 301 PPTHKEVAESLKVRVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMVM 360

Query: 361 RKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPRSFEEIGKSLNLSRETIRKINVATLS 420
           RKLMKQE+K+LLNTLSKREAHILSLYFGLNGEIPRSFEEIGKSLNLSRETIR+INVATLS
Sbjct: 361 RKLMKQEVKRLLNTLSKREAHILSLYFGLNGEIPRSFEEIGKSLNLSRETIRQINVATLS 420

Query: 421 KLKKTDILDYLKDYLV 437
           KLK TDILDYLK+YLV
Sbjct: 421 KLKNTDILDYLKEYLV 436

[Close]

BLAST of CmUC10G193560 vs. NCBI nr
Match: XP_004149725.1 (RNA polymerase sigma factor sigD, chloroplastic [Cucumis sativus] >KGN58573.1 hypothetical protein Csa_000720 [Cucumis sativus])

HSP 1 Score: 795.4 bits (2053), Expect = 2.4e-226
Identity = 403/436 (92.43%), Postives = 416/436 (95.41%), Query Frame = 0


Query: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
           MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLG N ISNDTLTLP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLP 60

Query: 61  PPPEAAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVG 120
           PPPEAAVLAVEAA EHVLVEA+GFSEDWS KN+E+MEESC GDGTVAWKKKRRKRRKEVG
Sbjct: 61  PPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVGDGTVAWKKKRRKRRKEVG 120

Query: 121 VKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAI 180
           VKAEENW+ALSSGPLRPGYLS KEEAELCLCLKEA  LE  KTRIMETQEHEPTNKQLAI
Sbjct: 121 VKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLENVKTRIMETQEHEPTNKQLAI 180

Query: 181 ALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240
           A+GTK G IDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA
Sbjct: 181 AMGTKSGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240

Query: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGHMGQMVARIAEANNHLGIKLSR 300
           ERFEPNRGHKLSTYAYWWIRQAIIRALDK SRLVRLPGHMGQMVARIAE NNHLGIKLSR
Sbjct: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSR 300

Query: 301 PPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPENMVM 360
           PPT+KEVAESLKVH+ST+RLV ERSKRPISINQP NDR CLTLQEIMPGPDNLTPENMVM
Sbjct: 301 PPTNKEVAESLKVHLSTIRLVMERSKRPISINQPVNDRSCLTLQEIMPGPDNLTPENMVM 360

Query: 361 RKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPRSFEEIGKSLNLSRETIRKINVATLS 420
           RKLMKQELK+LLNTLSKREA ILSLYFGLNGEIP+SFEEIGKSLNLSRETIR+ N+ATLS
Sbjct: 361 RKLMKQELKRLLNTLSKREARILSLYFGLNGEIPQSFEEIGKSLNLSRETIRQTNIATLS 420

Query: 421 KLKKTDILDYLKDYLV 437
           KLKKTD+LDYLKDYLV
Sbjct: 421 KLKKTDVLDYLKDYLV 436

[Close]

BLAST of CmUC10G193560 vs. NCBI nr
Match: KAA0048391.1 (RNA polymerase sigma factor sigD [Cucumis melo var. makuwa] >TYJ99868.1 RNA polymerase sigma factor sigD [Cucumis melo var. makuwa])

HSP 1 Score: 791.6 bits (2043), Expect = 3.5e-225
Identity = 402/436 (92.20%), Postives = 418/436 (95.87%), Query Frame = 0


Query: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
           MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHFPFPPFS+KLG NFIS DTLTLP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSSKLGPNFISYDTLTLP 60

Query: 61  PPPEAAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVG 120
           PPPEAAVLAVEAA EHVLVEARGFSEDWS KN+ERMEESC GDGTVAWKKKRRKRRKEVG
Sbjct: 61  PPPEAAVLAVEAAGEHVLVEARGFSEDWSSKNVERMEESCVGDGTVAWKKKRRKRRKEVG 120

Query: 121 VKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAI 180
           VKAEENW+ALSSGPLRPGYLS KEEAELCLCLKEA  LEK K+RIMETQEHEPTNKQLAI
Sbjct: 121 VKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLEKVKSRIMETQEHEPTNKQLAI 180

Query: 181 ALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240
           A+GTK G IDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA
Sbjct: 181 AMGTKPGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240

Query: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGHMGQMVARIAEANNHLGIKLSR 300
           ERFEP+RGHKLSTYAYWWIRQAIIRALDK SRLVRLPGHMGQMVARIAE NNHLGIKLSR
Sbjct: 241 ERFEPSRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSR 300

Query: 301 PPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPENMVM 360
           PPT++EVAESLKV VSTVRLV ERSKRPISINQP NDR CLTLQEI+PGPDNLTPENMVM
Sbjct: 301 PPTNEEVAESLKVRVSTVRLVMERSKRPISINQPVNDRSCLTLQEIIPGPDNLTPENMVM 360

Query: 361 RKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPRSFEEIGKSLNLSRETIRKINVATLS 420
           RKLMKQELK+LLNTLSKREAHILSLYFGLNGEIP+SFEEIGKSLNLSRETIR+IN+ATLS
Sbjct: 361 RKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLS 420

Query: 421 KLKKTDILDYLKDYLV 437
           KLKKT++LDY+KDYLV
Sbjct: 421 KLKKTNVLDYIKDYLV 436

[Close]

BLAST of CmUC10G193560 vs. NCBI nr
Match: XP_008461821.1 (PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Cucumis melo])

HSP 1 Score: 771.2 bits (1990), Expect = 4.9e-219
Identity = 390/423 (92.20%), Postives = 406/423 (95.98%), Query Frame = 0


Query: 14  SPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLPPPPEAAVLAVEAA 73
           SPTLPSISLSSLPSLKTHLPQQPHFPFPPFS+KLG NFIS DTLTLPPPPEAAVLAVEAA
Sbjct: 51  SPTLPSISLSSLPSLKTHLPQQPHFPFPPFSSKLGPNFISYDTLTLPPPPEAAVLAVEAA 110

Query: 74  REHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSG 133
            EHVLVEARGFSEDWS KN+ERMEESC GDGTVAWKKKRRKRRKEVGVKAEENW+ALSSG
Sbjct: 111 GEHVLVEARGFSEDWSSKNVERMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSG 170

Query: 134 PLRPGYLSSKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRIL 193
           PLRPGYLS KEEAELCLCLKEA  LEK K+RIMETQEHEPTNKQLAIA+GTK G IDRIL
Sbjct: 171 PLRPGYLSPKEEAELCLCLKEAVLLEKVKSRIMETQEHEPTNKQLAIAMGTKPGCIDRIL 230

Query: 194 CRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLST 253
           CRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEP+RGHKLST
Sbjct: 231 CRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPSRGHKLST 290

Query: 254 YAYWWIRQAIIRALDKNSRLVRLPGHMGQMVARIAEANNHLGIKLSRPPTHKEVAESLKV 313
           YAYWWIRQAIIRALDK SRLVRLPGHMGQMVARIAE NNHLGIKLSRPPT++EVAESLKV
Sbjct: 291 YAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNEEVAESLKV 350

Query: 314 HVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPENMVMRKLMKQELKKLLN 373
            VSTVRLV ERSKRPISINQP NDR CLTLQEI+PGPDNLTPENMVMRKLMKQELK+LLN
Sbjct: 351 RVSTVRLVMERSKRPISINQPVNDRSCLTLQEIIPGPDNLTPENMVMRKLMKQELKRLLN 410

Query: 374 TLSKREAHILSLYFGLNGEIPRSFEEIGKSLNLSRETIRKINVATLSKLKKTDILDYLKD 433
           TLSKREAHILSLYFGLNGEIP+SFEEIGKSLNLSRETIR+IN+ATLSKLKKT++LDY+KD
Sbjct: 411 TLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKD 470

Query: 434 YLV 437
           YLV
Sbjct: 471 YLV 473

[Close]

BLAST of CmUC10G193560 vs. NCBI nr
Match: XP_023528248.1 (RNA polymerase sigma factor sigD, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 759.6 bits (1960), Expect = 1.5e-215
Identity = 388/437 (88.79%), Postives = 411/437 (94.05%), Query Frame = 0


Query: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
           MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHF   PFSTKL  NFI+NDTLT P
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60

Query: 61  PPPE-AAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEV 120
           PP E AAVLAVEAAREHVLVEA   S+DW CKNLE+ME+SCGGDG VAWKK+RRKRRKEV
Sbjct: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV 120

Query: 121 GVKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLA 180
           G  AEENWVALS+GPLRPG+LSSKEEAELCLCLKEAAQ+EK KTRIMETQ+HEPTNKQLA
Sbjct: 121 GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKIKTRIMETQDHEPTNKQLA 180

Query: 181 IALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKG 240
           IA+GTKLG IDR+L RARESRDRLIRCYSKLVISIAAPYQGKG+SLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
           AERFEPNRGHKLSTYAYWWIRQ II+ALDK SRLVRLPGHMGQMVARIAEANNHLGIKLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300

Query: 301 RPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPENMV 360
           R PTHKEVA+ LKV VSTVRLVTERSKRPISINQP NDRGCLTLQEIMPGPDNLTPENMV
Sbjct: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360

Query: 361 MRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPRSFEEIGKSLNLSRETIRKINVATL 420
           +RKLMKQELKKLLNTLSKREAHIL+LYFGLNG+IP+SFEEIGKSLNLSRETIR+ N+ATL
Sbjct: 361 IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420

Query: 421 SKLKKTDILDYLKDYLV 437
           +KLKK++ILDYLKDYLV
Sbjct: 421 AKLKKSNILDYLKDYLV 437

[Close]

BLAST of CmUC10G193560 vs. ExPASy Swiss-Prot
Match: Q9ZSL6 (RNA polymerase sigma factor sigD, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGD PE=2 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 1.3e-86
Identity = 193/435 (44.37%), Postives = 271/435 (62.30%), Query Frame = 0


Query: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
           MATT    +  T  P+ P  ++S L    TH  Q       PFS KL +  +  DT T+ 
Sbjct: 1   MATTIPTTATATMCPSPPVPTISPL-LRTTHQCQPSPSLSSPFSIKLSTALVCGDT-TVD 60

Query: 61  PPPEAAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVG 120
              +++V+        +  E  G   +   K   R          V +++   +  +  G
Sbjct: 61  RVVDSSVM--------IKPEKWGIQSEKRRKRRRRRR--------VGYERLEPEEEENAG 120

Query: 121 VKAEENWVALS-SGPLRPGYLSSKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLA 180
           V+AE   +++   G  R G+LS  EE +LCL LKE A+LE   T +   +E+E  +  LA
Sbjct: 121 VEAEAETISVPVVGASRSGFLSRLEEVQLCLYLKEGAKLENLGTSV---EENEMVSVLLA 180

Query: 181 IALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKG 240
              G K  S + ILCR +E+R+++ RCY +LV+SIA  YQGKGL+LQDL QEG+IGLL+G
Sbjct: 181 SGRGKKKRSANEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
           AERF+P+RG+KLSTY YWWI+QAI+RA+   SRLV+LPG M ++ A++AEA+N L  KL 
Sbjct: 241 AERFDPDRGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLR 300

Query: 301 RPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPENMV 360
           R P+ +E+AE L ++VS VRL  ERS+ P+S+++  +  G +TLQEI+ GPD   PE MV
Sbjct: 301 RQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMV 360

Query: 361 MRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPRSFEEIGKSLNLSRETIRKINVATL 420
            R+ MK E+++LL +L+ RE+ +L LYFGLNGE P SFEEIGKSL LSRE +R+IN   L
Sbjct: 361 KREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIAL 414

Query: 421 SKLKKTDILDYLKDY 435
            KL+    ++ LK Y
Sbjct: 421 KKLRNVHNVNDLKIY 414

[Close]

BLAST of CmUC10G193560 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 201.8 bits (512), Expect = 1.6e-50
Identity = 116/340 (34.12%), Postives = 197/340 (57.94%), Query Frame = 0


Query: 97  EESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPL-RPGYLSSKEEAELCLCLKEA 156
           E+S G D   A K K + R+        E+ + L    + R   L + EE EL   + + 
Sbjct: 65  EDSVGEDEDAAAKAKAKVRKTYT-----EDSIRLYLQEIGRIRLLRADEEIELARQIADL 124

Query: 157 AQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIA 216
             LE+ +  ++E  +  P++ + A A+ + L    R L R R ++D++++   +LV+SIA
Sbjct: 125 LALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIA 184

Query: 217 APYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVR 276
             Y  +GLS QDL QEG++GL++ AE+F+  +G+K STYA WWIRQAI RA+   SR +R
Sbjct: 185 KKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIR 244

Query: 277 LPGHMGQMVARIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPF 336
           LP H+ + ++RI +    L  ++ R PT +E+A  +++ +  +R + + ++ PIS+  P 
Sbjct: 245 LPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 304

Query: 337 NDRGCLTLQEIMPGPDNLTPENMVMRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPR 396
                  L + +   D  TPE+ V + L++++L+ +L+TLS RE  +L L +GL+    +
Sbjct: 305 GKEEDSRLGDFIEA-DGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMK 364

Query: 397 SFEEIGKSLNLSRETIRKINVATLSKLKKTDILDYLKDYL 436
           + EEIG+  N++RE IR+I    L KL+  +    LK+Y+
Sbjct: 365 TLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398

[Close]

BLAST of CmUC10G193560 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.7e-50
Identity = 112/339 (33.04%), Postives = 195/339 (57.52%), Query Frame = 0


Query: 97  EESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAA 156
           +E     G  A  ++R + +K+   +          G +R   L + EE EL   + +  
Sbjct: 54  DEDDAKSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIR--LLRADEEIELARKIADLL 113

Query: 157 QLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAA 216
           +LE+ + R+ E  E +P + + A A+   L +    L   R ++D++++   +LV+SIA 
Sbjct: 114 ELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAK 173

Query: 217 PYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRL 276
            Y  +GLS QDL QEG++GL++ AE+F+  +G+K STYA WWIRQAI RA+   SR +RL
Sbjct: 174 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRL 233

Query: 277 PGHMGQMVARIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFN 336
           P H+ + ++RI +    L  ++ R PT +E+A  +++ +  +R + + ++ PIS+  P  
Sbjct: 234 PVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIG 293

Query: 337 DRGCLTLQEIMPGPDNLTPENMVMRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPRS 396
                 L + +   D  TPE+ V + L++++L+K+L++LS RE  +L L +GL+    ++
Sbjct: 294 KEEDSRLGDFIES-DGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKT 353

Query: 397 FEEIGKSLNLSRETIRKINVATLSKLKKTDILDYLKDYL 436
            EEIG+  N++RE IR+I    L KL+  +    LK+Y+
Sbjct: 354 LEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389

[Close]

BLAST of CmUC10G193560 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 193.4 bits (490), Expect = 5.5e-48
Identity = 112/346 (32.37%), Postives = 197/346 (56.94%), Query Frame = 0


Query: 91  KNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSSKEEAELCL 150
           K LE+         T +  KK+R   +EV       ++ +++   +   L+ +EE EL  
Sbjct: 226 KGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSK--LLTVREEHELSA 285

Query: 151 CLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKL 210
            +++  +LE+ +T + E    +PT  Q A A G    S+ + +      +D++I+   +L
Sbjct: 286 GIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRL 345

Query: 211 VISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKN 270
           VISIA  YQG G++LQDL QEG  GL++GAE+F+  +G K STYA+WWI+QA+ ++L   
Sbjct: 346 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQ 405

Query: 271 SRLVRLPGHMGQMVARIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPIS 330
           SR++RLP HM +   R+ EA   L  +  + P ++E+AE+  + +  +  V    K P S
Sbjct: 406 SRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRS 465

Query: 331 INQPFNDRGCLTLQEIMPGPDNLTPENMVMRKLMKQELKKLLNTLSKREAHILSLYFGLN 390
           ++Q       L   E++  P+ +T E++++++ M+Q+L K+L++L  RE  ++   FG+ 
Sbjct: 466 LDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGME 525

Query: 391 GEIPRSFEEIGKSLNLSRETIRKINVATLSKLKKTDILDYLKDYLV 437
               ++ +EIG+ + +SRE +R+I  +   KLK     ++L+ YLV
Sbjct: 526 DGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]

BLAST of CmUC10G193560 vs. ExPASy Swiss-Prot
Match: Q9LD95 (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.1e-47
Identity = 112/322 (34.78%), Postives = 183/322 (56.83%), Query Frame = 0


Query: 103 DGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLEKAK 162
           +G V  K   +K+ K+ G   ++       GP     L++KEEAEL   ++   +LEK K
Sbjct: 212 EGYVPQKTSAKKKYKQ-GADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVK 271

Query: 163 TRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKG 222
           T++      EPT  + A A+G     +   + R R SR++LI    +LV+ IA  YQ +G
Sbjct: 272 TKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRG 331

Query: 223 LSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGHMGQ 282
           L+ QDL QEG++GL+K  E+F+P  G + +TYAYWWIRQ+I +++ +NSR +RLP ++  
Sbjct: 332 LNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYM 391

Query: 283 MVARIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLT 342
           ++ +++EA      + +  P+ +E+A  + V    +  +   ++ P+S+ QP       T
Sbjct: 392 LLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTT 451

Query: 343 LQEIMPGPDNLTPENMVMRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPRSFEEIGK 402
            QEI P     TP   V ++LM+  ++ LLN LS +E  I+ L FG++G   RS  EIG+
Sbjct: 452 FQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGE 511

Query: 403 SLNLSRETIRKINVATLSKLKK 425
              LS+E +R++    L +LK+
Sbjct: 512 IYGLSKERVRQLESRALYRLKQ 532

[Close]

BLAST of CmUC10G193560 vs. ExPASy TrEMBL
Match: A0A0A0L9T0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G687740 PE=3 SV=1)

HSP 1 Score: 795.4 bits (2053), Expect = 1.2e-226
Identity = 403/436 (92.43%), Postives = 416/436 (95.41%), Query Frame = 0


Query: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
           MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLG N ISNDTLTLP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLP 60

Query: 61  PPPEAAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVG 120
           PPPEAAVLAVEAA EHVLVEA+GFSEDWS KN+E+MEESC GDGTVAWKKKRRKRRKEVG
Sbjct: 61  PPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVGDGTVAWKKKRRKRRKEVG 120

Query: 121 VKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAI 180
           VKAEENW+ALSSGPLRPGYLS KEEAELCLCLKEA  LE  KTRIMETQEHEPTNKQLAI
Sbjct: 121 VKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLENVKTRIMETQEHEPTNKQLAI 180

Query: 181 ALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240
           A+GTK G IDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA
Sbjct: 181 AMGTKSGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240

Query: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGHMGQMVARIAEANNHLGIKLSR 300
           ERFEPNRGHKLSTYAYWWIRQAIIRALDK SRLVRLPGHMGQMVARIAE NNHLGIKLSR
Sbjct: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSR 300

Query: 301 PPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPENMVM 360
           PPT+KEVAESLKVH+ST+RLV ERSKRPISINQP NDR CLTLQEIMPGPDNLTPENMVM
Sbjct: 301 PPTNKEVAESLKVHLSTIRLVMERSKRPISINQPVNDRSCLTLQEIMPGPDNLTPENMVM 360

Query: 361 RKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPRSFEEIGKSLNLSRETIRKINVATLS 420
           RKLMKQELK+LLNTLSKREA ILSLYFGLNGEIP+SFEEIGKSLNLSRETIR+ N+ATLS
Sbjct: 361 RKLMKQELKRLLNTLSKREARILSLYFGLNGEIPQSFEEIGKSLNLSRETIRQTNIATLS 420

Query: 421 KLKKTDILDYLKDYLV 437
           KLKKTD+LDYLKDYLV
Sbjct: 421 KLKKTDVLDYLKDYLV 436

[Close]

BLAST of CmUC10G193560 vs. ExPASy TrEMBL
Match: A0A5D3BP27 (RNA polymerase sigma factor sigD OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00100 PE=3 SV=1)

HSP 1 Score: 791.6 bits (2043), Expect = 1.7e-225
Identity = 402/436 (92.20%), Postives = 418/436 (95.87%), Query Frame = 0


Query: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
           MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHFPFPPFS+KLG NFIS DTLTLP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSSKLGPNFISYDTLTLP 60

Query: 61  PPPEAAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVG 120
           PPPEAAVLAVEAA EHVLVEARGFSEDWS KN+ERMEESC GDGTVAWKKKRRKRRKEVG
Sbjct: 61  PPPEAAVLAVEAAGEHVLVEARGFSEDWSSKNVERMEESCVGDGTVAWKKKRRKRRKEVG 120

Query: 121 VKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAI 180
           VKAEENW+ALSSGPLRPGYLS KEEAELCLCLKEA  LEK K+RIMETQEHEPTNKQLAI
Sbjct: 121 VKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLEKVKSRIMETQEHEPTNKQLAI 180

Query: 181 ALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240
           A+GTK G IDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA
Sbjct: 181 AMGTKPGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240

Query: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGHMGQMVARIAEANNHLGIKLSR 300
           ERFEP+RGHKLSTYAYWWIRQAIIRALDK SRLVRLPGHMGQMVARIAE NNHLGIKLSR
Sbjct: 241 ERFEPSRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSR 300

Query: 301 PPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPENMVM 360
           PPT++EVAESLKV VSTVRLV ERSKRPISINQP NDR CLTLQEI+PGPDNLTPENMVM
Sbjct: 301 PPTNEEVAESLKVRVSTVRLVMERSKRPISINQPVNDRSCLTLQEIIPGPDNLTPENMVM 360

Query: 361 RKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPRSFEEIGKSLNLSRETIRKINVATLS 420
           RKLMKQELK+LLNTLSKREAHILSLYFGLNGEIP+SFEEIGKSLNLSRETIR+IN+ATLS
Sbjct: 361 RKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLS 420

Query: 421 KLKKTDILDYLKDYLV 437
           KLKKT++LDY+KDYLV
Sbjct: 421 KLKKTNVLDYIKDYLV 436

[Close]

BLAST of CmUC10G193560 vs. ExPASy TrEMBL
Match: A0A1S3CFL7 (RNA polymerase sigma factor sigD, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500331 PE=3 SV=1)

HSP 1 Score: 771.2 bits (1990), Expect = 2.4e-219
Identity = 390/423 (92.20%), Postives = 406/423 (95.98%), Query Frame = 0


Query: 14  SPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLPPPPEAAVLAVEAA 73
           SPTLPSISLSSLPSLKTHLPQQPHFPFPPFS+KLG NFIS DTLTLPPPPEAAVLAVEAA
Sbjct: 51  SPTLPSISLSSLPSLKTHLPQQPHFPFPPFSSKLGPNFISYDTLTLPPPPEAAVLAVEAA 110

Query: 74  REHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSG 133
            EHVLVEARGFSEDWS KN+ERMEESC GDGTVAWKKKRRKRRKEVGVKAEENW+ALSSG
Sbjct: 111 GEHVLVEARGFSEDWSSKNVERMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSG 170

Query: 134 PLRPGYLSSKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRIL 193
           PLRPGYLS KEEAELCLCLKEA  LEK K+RIMETQEHEPTNKQLAIA+GTK G IDRIL
Sbjct: 171 PLRPGYLSPKEEAELCLCLKEAVLLEKVKSRIMETQEHEPTNKQLAIAMGTKPGCIDRIL 230

Query: 194 CRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLST 253
           CRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEP+RGHKLST
Sbjct: 231 CRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPSRGHKLST 290

Query: 254 YAYWWIRQAIIRALDKNSRLVRLPGHMGQMVARIAEANNHLGIKLSRPPTHKEVAESLKV 313
           YAYWWIRQAIIRALDK SRLVRLPGHMGQMVARIAE NNHLGIKLSRPPT++EVAESLKV
Sbjct: 291 YAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNEEVAESLKV 350

Query: 314 HVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPENMVMRKLMKQELKKLLN 373
            VSTVRLV ERSKRPISINQP NDR CLTLQEI+PGPDNLTPENMVMRKLMKQELK+LLN
Sbjct: 351 RVSTVRLVMERSKRPISINQPVNDRSCLTLQEIIPGPDNLTPENMVMRKLMKQELKRLLN 410

Query: 374 TLSKREAHILSLYFGLNGEIPRSFEEIGKSLNLSRETIRKINVATLSKLKKTDILDYLKD 433
           TLSKREAHILSLYFGLNGEIP+SFEEIGKSLNLSRETIR+IN+ATLSKLKKT++LDY+KD
Sbjct: 411 TLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKD 470

Query: 434 YLV 437
           YLV
Sbjct: 471 YLV 473

[Close]

BLAST of CmUC10G193560 vs. ExPASy TrEMBL
Match: A0A6J1J3P0 (RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481519 PE=3 SV=1)

HSP 1 Score: 757.7 bits (1955), Expect = 2.7e-215
Identity = 387/437 (88.56%), Postives = 411/437 (94.05%), Query Frame = 0


Query: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
           MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHF   PFSTKL  NFISNDTLT P
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFISNDTLTHP 60

Query: 61  PPPE-AAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEV 120
           PP E AAVLAVEAAREHVLVEA   S+DW CKNLE+ME+SCGGDG VAWKK+RRKRRKEV
Sbjct: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV 120

Query: 121 GVKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLA 180
           G  AEENWVALSSGPLRPG+LSSKEEAELCLCLKEAAQ+EK KTRIMETQ+HEPTNKQLA
Sbjct: 121 GETAEENWVALSSGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDHEPTNKQLA 180

Query: 181 IALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKG 240
           IA+GTKLG IDR+L RARESRDRLIRCYSKLVISIAAPYQGKG+SLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
           AERFEPNRGHKLSTYAYWWIRQ II+ALDK SRLVRLPGHMGQMVARIAEANNHLGIKLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300

Query: 301 RPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPENMV 360
           R PTHKEVA+ LKV VSTVRLVTERSKRPISIN+P NDRGCLTLQEIMPGPDNLTPENMV
Sbjct: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPVNDRGCLTLQEIMPGPDNLTPENMV 360

Query: 361 MRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPRSFEEIGKSLNLSRETIRKINVATL 420
           +RKLMKQELK+LL+TLSKREAHIL+LYFGLNG+IP+SFEEIGKSLNLSRETIR+ N+ATL
Sbjct: 361 IRKLMKQELKRLLSTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420

Query: 421 SKLKKTDILDYLKDYLV 437
           +KLKK++ILDYLKDYLV
Sbjct: 421 AKLKKSNILDYLKDYLV 437

[Close]

BLAST of CmUC10G193560 vs. ExPASy TrEMBL
Match: A0A6J1FAN3 (RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111442316 PE=3 SV=1)

HSP 1 Score: 757.3 bits (1954), Expect = 3.5e-215
Identity = 387/437 (88.56%), Postives = 411/437 (94.05%), Query Frame = 0


Query: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
           MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHF   PFSTKL  NFI+NDTLT P
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60

Query: 61  PPPE-AAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEV 120
           PP E AAVLAVEAAREHVLVEA   S+DWSCKNLE+ME+SCGG G VAWKK+RRKRRKEV
Sbjct: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWSCKNLEKMEQSCGGAGNVAWKKRRRKRRKEV 120

Query: 121 GVKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLA 180
           G  AEENWVALS+GPLRPG+LSSKEEAELCLCLKEAAQ+EK KTRIMETQEHEPTNKQLA
Sbjct: 121 GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKIKTRIMETQEHEPTNKQLA 180

Query: 181 IALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKG 240
           IA+GTKLG IDR+L RARESRDRLIRCYSKLVISIAAPYQGKG+SLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
           AERFEPNRGHKLSTYAYWWIRQ II+ALDK SRLVRLPGHMGQMVA+IAEANNHLGIKLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVAKIAEANNHLGIKLS 300

Query: 301 RPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPENMV 360
           R PTHKEVA+ LKV VSTVRLVTER+KRPISINQP NDRGCLTLQEIMPGPDNLTPENMV
Sbjct: 301 RVPTHKEVAKYLKVPVSTVRLVTERNKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360

Query: 361 MRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPRSFEEIGKSLNLSRETIRKINVATL 420
           +RKLMKQELKKLLNTLSKREAHIL+LYFGLNG+IP+SFEEIGKSLNLSRETIR+ N+ATL
Sbjct: 361 IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420

Query: 421 SKLKKTDILDYLKDYLV 437
           +KLKK++ILDYLKDYLV
Sbjct: 421 AKLKKSNILDYLKDYLV 437

[Close]

BLAST of CmUC10G193560 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 321.6 bits (823), Expect = 9.6e-88
Identity = 193/435 (44.37%), Postives = 271/435 (62.30%), Query Frame = 0


Query: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
           MATT    +  T  P+ P  ++S L    TH  Q       PFS KL +  +  DT T+ 
Sbjct: 1   MATTIPTTATATMCPSPPVPTISPL-LRTTHQCQPSPSLSSPFSIKLSTALVCGDT-TVD 60

Query: 61  PPPEAAVLAVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVG 120
              +++V+        +  E  G   +   K   R          V +++   +  +  G
Sbjct: 61  RVVDSSVM--------IKPEKWGIQSEKRRKRRRRRR--------VGYERLEPEEEENAG 120

Query: 121 VKAEENWVALS-SGPLRPGYLSSKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLA 180
           V+AE   +++   G  R G+LS  EE +LCL LKE A+LE   T +   +E+E  +  LA
Sbjct: 121 VEAEAETISVPVVGASRSGFLSRLEEVQLCLYLKEGAKLENLGTSV---EENEMVSVLLA 180

Query: 181 IALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKG 240
              G K  S + ILCR +E+R+++ RCY +LV+SIA  YQGKGL+LQDL QEG+IGLL+G
Sbjct: 181 SGRGKKKRSANEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
           AERF+P+RG+KLSTY YWWI+QAI+RA+   SRLV+LPG M ++ A++AEA+N L  KL 
Sbjct: 241 AERFDPDRGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLR 300

Query: 301 RPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPENMV 360
           R P+ +E+AE L ++VS VRL  ERS+ P+S+++  +  G +TLQEI+ GPD   PE MV
Sbjct: 301 RQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMV 360

Query: 361 MRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPRSFEEIGKSLNLSRETIRKINVATL 420
            R+ MK E+++LL +L+ RE+ +L LYFGLNGE P SFEEIGKSL LSRE +R+IN   L
Sbjct: 361 KREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIAL 414

Query: 421 SKLKKTDILDYLKDY 435
            KL+    ++ LK Y
Sbjct: 421 KKLRNVHNVNDLKIY 414

[Close]

BLAST of CmUC10G193560 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 193.4 bits (490), Expect = 3.9e-49
Identity = 112/346 (32.37%), Postives = 197/346 (56.94%), Query Frame = 0


Query: 91  KNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSSKEEAELCL 150
           K LE+         T +  KK+R   +EV       ++ +++   +   L+ +EE EL  
Sbjct: 226 KGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSK--LLTVREEHELSA 285

Query: 151 CLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKL 210
            +++  +LE+ +T + E    +PT  Q A A G    S+ + +      +D++I+   +L
Sbjct: 286 GIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRL 345

Query: 211 VISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKN 270
           VISIA  YQG G++LQDL QEG  GL++GAE+F+  +G K STYA+WWI+QA+ ++L   
Sbjct: 346 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQ 405

Query: 271 SRLVRLPGHMGQMVARIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPIS 330
           SR++RLP HM +   R+ EA   L  +  + P ++E+AE+  + +  +  V    K P S
Sbjct: 406 SRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRS 465

Query: 331 INQPFNDRGCLTLQEIMPGPDNLTPENMVMRKLMKQELKKLLNTLSKREAHILSLYFGLN 390
           ++Q       L   E++  P+ +T E++++++ M+Q+L K+L++L  RE  ++   FG+ 
Sbjct: 466 LDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGME 525

Query: 391 GEIPRSFEEIGKSLNLSRETIRKINVATLSKLKKTDILDYLKDYLV 437
               ++ +EIG+ + +SRE +R+I  +   KLK     ++L+ YLV
Sbjct: 526 DGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]

BLAST of CmUC10G193560 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 191.4 bits (485), Expect = 1.5e-48
Identity = 112/322 (34.78%), Postives = 183/322 (56.83%), Query Frame = 0


Query: 103 DGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLEKAK 162
           +G V  K   +K+ K+ G   ++       GP     L++KEEAEL   ++   +LEK K
Sbjct: 212 EGYVPQKTSAKKKYKQ-GADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVK 271

Query: 163 TRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKG 222
           T++      EPT  + A A+G     +   + R R SR++LI    +LV+ IA  YQ +G
Sbjct: 272 TKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRG 331

Query: 223 LSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGHMGQ 282
           L+ QDL QEG++GL+K  E+F+P  G + +TYAYWWIRQ+I +++ +NSR +RLP ++  
Sbjct: 332 LNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYM 391

Query: 283 MVARIAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLT 342
           ++ +++EA      + +  P+ +E+A  + V    +  +   ++ P+S+ QP       T
Sbjct: 392 LLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTT 451

Query: 343 LQEIMPGPDNLTPENMVMRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPRSFEEIGK 402
            QEI P     TP   V ++LM+  ++ LLN LS +E  I+ L FG++G   RS  EIG+
Sbjct: 452 FQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGE 511

Query: 403 SLNLSRETIRKINVATLSKLKK 425
              LS+E +R++    L +LK+
Sbjct: 512 IYGLSKERVRQLESRALYRLKQ 532

[Close]

BLAST of CmUC10G193560 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 153.3 bits (386), Expect = 4.5e-37
Identity = 116/380 (30.53%), Postives = 185/380 (48.68%), Query Frame = 0


Query: 77  VLVEARGFSEDWSCKNLERMEESCGGDGTVAWKK-------KRRKRRKEVGVKAEENWV- 136
           +L++     + W+    + +     G GT+  KK           R++ +G K + N   
Sbjct: 115 LLLQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTH 174

Query: 137 -----ALSSGPLRPGY---------LSSKEEAELCLCLKEAAQLEKAKTRIMETQEHEPT 196
                 +SSG    GY         LS  E   L   +K   +L+  K+R+ +    EP+
Sbjct: 175 VKAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPS 234

Query: 197 NKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNI 256
           ++QLA++L      +   L     +R++L     +LV+SIA  Y   G  + DL Q G I
Sbjct: 235 DEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLI 294

Query: 257 GLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGHMGQMVARIAEANNHL 316
           GLL+G E+F+ ++G ++STY YWWIRQ + RAL  NSR +RLP H+ + +  I  A   L
Sbjct: 295 GLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL 354

Query: 317 GIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLT 376
             K    P+   +AESL +    VR  TE   +  S+     DR        +PG  + +
Sbjct: 355 QEK-GITPSIDRIAESLNMSQKKVRNATEAVSKVFSL-----DRDAFPSLNGLPGETHHS 414

Query: 377 ----------PENMVMRKLMKQELKKLLN-TLSKREAHILSLYFGLNGEIPRSFEEIGKS 424
                     P +      +K+E+ KL++ TL +RE  I+ LY+GL+ E   ++E+I K 
Sbjct: 415 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKR 474

[Close]

BLAST of CmUC10G193560 vs. TAIR 10
Match: AT5G24120.1 (sigma factor E )

HSP 1 Score: 140.6 bits (353), Expect = 3.0e-33
Identity = 97/306 (31.70%), Postives = 157/306 (51.31%), Query Frame = 0


Query: 137 PGYLSSKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRA 196
           P  LSS E A L   ++    L + K  + ++   EP   ++A  +    G + + +   
Sbjct: 217 PPVLSSTEHAWLFKLMQPMKALLEVKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIG 276

Query: 197 RESRDRLIRCYSKLVISIAAPYQGK---GLSLQDLTQEGNIGLLKGAERFEPNRGHKLST 256
           R +R++LI+   +LV+ +   Y  +   G   QDL Q G  GL+   +RFEP R  +LST
Sbjct: 277 RAARNKLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLST 336

Query: 257 YAYWWIRQAIIRALDKNSRLVRLPGHMGQMVARIAEANNHLGIKLSRPPTHKEVAESLKV 316
           Y  +WIR AIIR++   S   R+P  +  +   I +A   L  ++ RPPT  EV E LK+
Sbjct: 337 YGLFWIRHAIIRSM-TTSNFTRVPFGLESVRVEIYKAKTELWFEMGRPPTEDEVVERLKI 396

Query: 317 HVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPG---PDNLTPENMVMRKLMKQELKK 376
                R V   +K  +S+    N +  +T +E + G    D +   N     L++  L  
Sbjct: 397 TPERYREVLRAAKPVLSL----NSKHSVTQEEFINGITDVDGVGANNSRQPALLRLALDD 456

Query: 377 LLNTLSKREAHILSLYFGLNGEIPRSFEEIGKSLNLSRETIRKINVATLSKLKKTDILDY 436
           +L++L  +E+ ++   +GL+G+  R+  EI  +LN+SRE +RK  V  L KLK    +DY
Sbjct: 457 VLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHQARVDY 516

The following BLAST results are available for this feature:

BLAST of CmUC10G193560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906215.1	3.7e-235	95.64	RNA polymerase sigma factor sigD, chloroplastic [Benincasa hispida]	[more]
XP_004149725.1	2.4e-226	92.43	RNA polymerase sigma factor sigD, chloroplastic [Cucumis sativus] >KGN58573.1 hy...	[more]
KAA0048391.1	3.5e-225	92.20	RNA polymerase sigma factor sigD [Cucumis melo var. makuwa] >TYJ99868.1 RNA poly...	[more]
XP_008461821.1	4.9e-219	92.20	PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Cucumis melo]	[more]
XP_023528248.1	1.5e-215	88.79	RNA polymerase sigma factor sigD, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmUC10G193560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZSL6	1.3e-86	44.37	RNA polymerase sigma factor sigD, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
P38023	1.6e-50	34.12	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
P26683	7.7e-50	33.04	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
O22056	5.5e-48	32.37	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]
Q9LD95	2.1e-47	34.78	RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CmUC10G193560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9T0	1.2e-226	92.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G687740 PE=3 SV=1	[more]
A0A5D3BP27	1.7e-225	92.20	RNA polymerase sigma factor sigD OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CFL7	2.4e-219	92.20	RNA polymerase sigma factor sigD, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1J3P0	2.7e-215	88.56	RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FAN3	3.5e-215	88.56	RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CmUC10G193560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13730.1	9.6e-88	44.37	sigma factor 4	[more]
AT1G08540.1	3.9e-49	32.37	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	1.5e-48	34.78	RNApolymerase sigma-subunit F	[more]
AT1G64860.1	4.5e-37	30.53	sigma factor A	[more]
AT5G24120.1	3.0e-33	31.70	sigma factor E	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 227..240 score: 58.71 coord: 396..411 score: 39.64 coord: 251..259 score: 74.91 coord: 375..387 score: 37.52 coord: 411..422 score: 41.99
None	No IPR available	GENE3D	1.10.601.10	RNA Polymerase Primary Sigma Factor	coord: 103..275 e-value: 3.5E-36 score: 127.4
None	No IPR available	PANTHER	PTHR30603:SF47	RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC	coord: 4..435
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 4..435
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 365..423 e-value: 4.65354E-7 score: 44.4026
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 286..358 e-value: 1.4E-10 score: 41.1
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 203..272 e-value: 1.6E-20 score: 72.6
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 354..431 e-value: 7.7E-20 score: 72.6
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 276..351 e-value: 1.1E-8 score: 37.4
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 371..424 e-value: 5.3E-12 score: 45.1
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 199..424 e-value: 3.3E-31 score: 106.1
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 137..272
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 276..347
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 334..425

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC10G193560.1	CmUC10G193560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity