CmUC09G180300 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC09G180300
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Transcription factor GTE9 isoform X4
Location	CmU531Chr09: 35753036 .. 35754224 (+)
RNA-Seq Expression	CmUC09G180300
Synteny	CmUC09G180300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACTCCAACCAATTTTCTCCCGACGCACATTACCTAGCGTCGAAAAAAGTGACTTCTCCTTACTCCAAAGATTGCTTTATGGCGTCGGGAAAATGCCTTCTCCCGACGGTTACGCATTCTCCCCACGGTCATGCGTCGGGAGCAATGCGTTATCCCACAGTTGTACGTTCCCATCGCTCTCCCCACAGTTATGCGTCGGGAGTAACCTATAATTTTTTATTTTTTATTTTTTTTTTGGTGTATAAAGAAAATAAAAGCATTGAATTAGGTATGGTTGCTTTAAATTTATTTGAGAAGACATAGTTTGTGTATTATTTATTTATTGATTTTTGAAAAAATTACCTTTCTACTCCCAAGTTCTAAACAATATGGGTCCTGAATTTGAAAATTATATGCTACGTCAGTCAGAAATTTGCTTACATACAAACAAACACGTGGCAATAATTGAAGCTAAGTTTTCCAAAATTATATTTTAAAAGATGGCCGCGAAGGTTTTTTTGAGAAAAAAAAAAAAAAAGCCGCGCATTTAAGGATTATAATGCAATATTGAAAGGGATATAAATGTTTAAAAAATTTCTTAATTTCTTTAAAATTATTCCTCTATATATATTGTAATCGCAGAATTAATTGCCATTGTTTTAGTTTGAATTATAATTTTTAGAGGGCAATGACGAAGCGTGTGGTTGCGACGAAGGTGAATAGTTCTTCCACTCCCATCAGACCATCCAAGGCCAAGCCCAAGGCCAAGGCGACGATCGAGAAGCCGAAGAAAGCAAAAGCAGCGTGGTCTGAAGATAATGATCGAGTGAGTATGTTGAAGAGTAGATTTGCAACTACGATCTTGAAAGCACAGCGACAGCTTTCTCTAACTGAAAGATTAAAACTAAAGACGGCCTACATTGCGGACAAACTTCCGGTCCCGACTCCGACTCAAGAACGGAGATCAGAAGCCTCCCAAAAGGCTTTGCCGAGGAAGATCAAGGAACCTCCGACTCCTACTCCGATGGAAGAAATCAGAAAAGCGGCTCGAAAAGCTTTGGAGGAGTTGGAGCGGAGAGTTGACGTTGAAGACAGCCACAAATCGGTGAAGGATTTGGAGCATCTGTGCGGTTGGCCGATTCCCTACGTTGGTGGTTTCAAGAACAGGATGGAATATTATGGTTTATATTTGAAGGATTATTAA

mRNA sequence

ATGGAAAACTCCAACCAATTTTCTCCCGACGCACATTACCTAGCGTCGAAAAAAGTGACTTCTCCTTACTCCAAAGATTGCTTTATGGCGTCGGGAAAATGCCTTCTCCCGACGGTTACGCATTCTCCCCACGGTCATGCGTCGGGAGCAATGCGTTATCCCACAGTTAGGGCAATGACGAAGCGTGTGGTTGCGACGAAGGTGAATAGTTCTTCCACTCCCATCAGACCATCCAAGGCCAAGCCCAAGGCCAAGGCGACGATCGAGAAGCCGAAGAAAGCAAAAGCAGCGTGGTCTGAAGATAATGATCGAGTGAGTATGTTGAAGAGTAGATTTGCAACTACGATCTTGAAAGCACAGCGACAGCTTTCTCTAACTGAAAGATTAAAACTAAAGACGGCCTACATTGCGGACAAACTTCCGGTCCCGACTCCGACTCAAGAACGGAGATCAGAAGCCTCCCAAAAGGCTTTGCCGAGGAAGATCAAGGAACCTCCGACTCCTACTCCGATGGAAGAAATCAGAAAAGCGGCTCGAAAAGCTTTGGAGGAGTTGGAGCGGAGAGTTGACGTTGAAGACAGCCACAAATCGGTGAAGGATTTGGAGCATCTGTGCGGTTGGCCGATTCCCTACGTTGGTGGTTTCAAGAACAGGATGGAATATTATGGTTTATATTTGAAGGATTATTAA

Coding sequence (CDS)

ATGGAAAACTCCAACCAATTTTCTCCCGACGCACATTACCTAGCGTCGAAAAAAGTGACTTCTCCTTACTCCAAAGATTGCTTTATGGCGTCGGGAAAATGCCTTCTCCCGACGGTTACGCATTCTCCCCACGGTCATGCGTCGGGAGCAATGCGTTATCCCACAGTTAGGGCAATGACGAAGCGTGTGGTTGCGACGAAGGTGAATAGTTCTTCCACTCCCATCAGACCATCCAAGGCCAAGCCCAAGGCCAAGGCGACGATCGAGAAGCCGAAGAAAGCAAAAGCAGCGTGGTCTGAAGATAATGATCGAGTGAGTATGTTGAAGAGTAGATTTGCAACTACGATCTTGAAAGCACAGCGACAGCTTTCTCTAACTGAAAGATTAAAACTAAAGACGGCCTACATTGCGGACAAACTTCCGGTCCCGACTCCGACTCAAGAACGGAGATCAGAAGCCTCCCAAAAGGCTTTGCCGAGGAAGATCAAGGAACCTCCGACTCCTACTCCGATGGAAGAAATCAGAAAAGCGGCTCGAAAAGCTTTGGAGGAGTTGGAGCGGAGAGTTGACGTTGAAGACAGCCACAAATCGGTGAAGGATTTGGAGCATCTGTGCGGTTGGCCGATTCCCTACGTTGGTGGTTTCAAGAACAGGATGGAATATTATGGTTTATATTTGAAGGATTATTAA

Protein sequence

MENSNQFSPDAHYLASKKVTSPYSKDCFMASGKCLLPTVTHSPHGHASGAMRYPTVRAMTKRVVATKVNSSSTPIRPSKAKPKAKATIEKPKKAKAAWSEDNDRVSMLKSRFATTILKAQRQLSLTERLKLKTAYIADKLPVPTPTQERRSEASQKALPRKIKEPPTPTPMEEIRKAARKALEELERRVDVEDSHKSVKDLEHLCGWPIPYVGGFKNRMEYYGLYLKDY

Homology

[Close]

BLAST of CmUC09G180300 vs. NCBI nr
Match: KAA0061663.1 (transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa] >TYK21138.1 transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 4.3e-33
Identity = 109/203 (53.69%), Postives = 122/203 (60.10%), Query Frame = 0


Query: 68  VNSSSTPIRPSKAKPKAKATIEKPKKAKAAWS-------------EDNDRVSMLKSRFAT 127
           V  SST I+P KAK     TI KPKKAK   +               N+RVSMLK RFA 
Sbjct: 2   VCGSSTSIKPLKAK---VTTIVKPKKAKPTPTMGTTPLTAIRYNDNHNNRVSMLKRRFAG 61

Query: 128 TILKAQRQLSLTERLKLKTAYIADKLP-----VPTPTQERRSEASQKALPRKIKEP---- 187
           TILKAQ+QLS  ER+      +  K P      PT   + R EA+++AL RK KEP    
Sbjct: 62  TILKAQQQLSERERIMCN---VEKKQPPTLASTPTTMMDERREATREALWRK-KEPTTTP 121

Query: 188 -----------------PTPTP--MEEIRKAARKALEELERRVDVEDSHKSVKDLEHLCG 230
                            PTP P   EEIRKAAR+ALEELER VD+EDSHKSVKDLE LCG
Sbjct: 122 TKNSNEELRKVVQRAFSPTPIPSSTEEIRKAARRALEELERSVDIEDSHKSVKDLERLCG 181

[Close]

BLAST of CmUC09G180300 vs. NCBI nr
Match: KAG6571342.1 (hypothetical protein SDJN03_30257, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.8 bits (255), Expect = 3.9e-18
Identity = 76/185 (41.08%), Postives = 106/185 (57.30%), Query Frame = 0


Query: 55  TVRAMTKRVVATKVNSSSTPIRPSKAKPKAKATIEKPKKAKAAWSEDNDRVSMLKSRFAT 114
           +VRA + +  A K + S  P   +KAK  A  TI  P+   ++ S +++R  +LK +FA 
Sbjct: 10  SVRASSLKSKAKKPSLSLPPTSLTKAKTLAPTTI-VPRPTPSSSSGEDNRAKILKKKFAG 69

Query: 115 TILKAQRQLSLTERLKLKTAYIADKLPVPTPTQERRSEASQKALPRKIKEPPTPT----- 174
           TI KAQR LS   R K+++             +E   + S+    R++  P  P+     
Sbjct: 70  TIWKAQRHLS-KNRKKVRS----------EKRREADGKGSEAVDDRRVVPPLAPSLEDDE 129

Query: 175 ------PMEEIRKAARKALEELERRVDVEDSHKSVKDLEHLCGWPIPYVGGFKNRMEYYG 229
                   EE+R AAR+ LEE+ERRV V+DSH S+++ E LCG+PIPYVGGF NRM YYG
Sbjct: 130 ITMLKVRREEMRAAARRDLEEVERRVVVDDSHASLREYERLCGFPIPYVGGFLNRMHYYG 182

[Close]

BLAST of CmUC09G180300 vs. NCBI nr
Match: VFQ97081.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-04
Identity = 51/138 (36.96%), Postives = 73/138 (52.90%), Query Frame = 0


Query: 104 RVSMLKSRFATTILKAQRQLSLTERLKLKTAYIADKLPVPTPTQERRSEASQKAL---PR 163
           R +ML+SRFA TI KA  +  + + LKL+     ++L      ++ R E   KA     R
Sbjct: 393 RAAMLRSRFAETIFKANHKDDVVDPLKLQQE--KERLQKQQLAEKARIEEQIKAAEASTR 452

Query: 164 KIKEPPTPTPMEEIRKAARKALEELERRVDVEDSHKSVKDLEHLCGWP-----IPYVGGF 223
              E       E+ R+AAR ALE++ER VD++D+ K +KDLE LC  P     +   GG 
Sbjct: 453 MKAEVELKIQREKEREAARIALEKMERTVDLDDNLKILKDLEGLCQCPPCDGLLGNGGGV 512

Query: 224 -----KNRMEYYGLYLKD 229
                +N +E  GLY+KD
Sbjct: 513 NLSLSRNTLERLGLYIKD 528

[Close]

BLAST of CmUC09G180300 vs. NCBI nr
Match: XP_010929323.1 (transcription factor GTE9 isoform X2 [Elaeis guineensis])

HSP 1 Score: 57.0 bits (136), Expect = 2.5e-04
Identity = 55/147 (37.41%), Postives = 78/147 (53.06%), Query Frame = 0


Query: 104 RVSMLKSRFATTILKAQRQLSLTERLKLKTAYI---ADKLPVPTPTQERRSEASQK---A 163
           R +MLKSRFA TILKAQ++  LT   K+  A +    +KL      ++ R EA  K   A
Sbjct: 527 RAAMLKSRFADTILKAQQKALLTHGEKVDPAKLQREREKLEKKQREEKARIEAEVKAAEA 586

Query: 164 LPRKIKEPPTPTPMEEIRKAARKALEELERRVDVEDSHKSVKDLEHLCGWP--------- 223
             R   E       E  R+AAR AL+++E+ VDV++SH  VKDLE   G+P         
Sbjct: 587 AARMKAEAEMKMQREREREAARLALQKMEKTVDVDNSH-LVKDLEDF-GYPHHLDMPDEV 646

Query: 224 -IPYVGGFK------NRMEYYGLYLKD 229
            + +V GF+      N +E  GL++K+
Sbjct: 647 VVNFVDGFELQTYLANPLEQLGLFMKN 671

[Close]

BLAST of CmUC09G180300 vs. NCBI nr
Match: XP_010929315.1 (transcription factor GTE9 isoform X1 [Elaeis guineensis] >XP_029123053.1 transcription factor GTE9 isoform X1 [Elaeis guineensis])

HSP 1 Score: 57.0 bits (136), Expect = 2.5e-04
Identity = 55/147 (37.41%), Postives = 78/147 (53.06%), Query Frame = 0


Query: 104 RVSMLKSRFATTILKAQRQLSLTERLKLKTAYI---ADKLPVPTPTQERRSEASQK---A 163
           R +MLKSRFA TILKAQ++  LT   K+  A +    +KL      ++ R EA  K   A
Sbjct: 532 RAAMLKSRFADTILKAQQKALLTHGEKVDPAKLQREREKLEKKQREEKARIEAEVKAAEA 591

Query: 164 LPRKIKEPPTPTPMEEIRKAARKALEELERRVDVEDSHKSVKDLEHLCGWP--------- 223
             R   E       E  R+AAR AL+++E+ VDV++SH  VKDLE   G+P         
Sbjct: 592 AARMKAEAEMKMQREREREAARLALQKMEKTVDVDNSH-LVKDLEDF-GYPHHLDMPDEV 651

Query: 224 -IPYVGGFK------NRMEYYGLYLKD 229
            + +V GF+      N +E  GL++K+
Sbjct: 652 VVNFVDGFELQTYLANPLEQLGLFMKN 676

[Close]

BLAST of CmUC09G180300 vs. ExPASy TrEMBL
Match: A0A5D3DC97 (Transcription factor GTE9 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75860G00060 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.1e-33
Identity = 109/203 (53.69%), Postives = 122/203 (60.10%), Query Frame = 0


Query: 68  VNSSSTPIRPSKAKPKAKATIEKPKKAKAAWS-------------EDNDRVSMLKSRFAT 127
           V  SST I+P KAK     TI KPKKAK   +               N+RVSMLK RFA 
Sbjct: 2   VCGSSTSIKPLKAK---VTTIVKPKKAKPTPTMGTTPLTAIRYNDNHNNRVSMLKRRFAG 61

Query: 128 TILKAQRQLSLTERLKLKTAYIADKLP-----VPTPTQERRSEASQKALPRKIKEP---- 187
           TILKAQ+QLS  ER+      +  K P      PT   + R EA+++AL RK KEP    
Sbjct: 62  TILKAQQQLSERERIMCN---VEKKQPPTLASTPTTMMDERREATREALWRK-KEPTTTP 121

Query: 188 -----------------PTPTP--MEEIRKAARKALEELERRVDVEDSHKSVKDLEHLCG 230
                            PTP P   EEIRKAAR+ALEELER VD+EDSHKSVKDLE LCG
Sbjct: 122 TKNSNEELRKVVQRAFSPTPIPSSTEEIRKAARRALEELERSVDIEDSHKSVKDLERLCG 181

[Close]

BLAST of CmUC09G180300 vs. ExPASy TrEMBL
Match: A0A0A0KGL2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421730 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.3e-32
Identity = 105/212 (49.53%), Postives = 125/212 (58.96%), Query Frame = 0


Query: 68  VNSSSTPIRPSKAKPKAKATIEKPKKAK------------AAWSEDNDRVSMLKSRFATT 127
           V +SST I+P K   K    +++PKKAK              + + + RVSMLKSRFA+T
Sbjct: 8   VCNSSTSIKPLKV--KVTTIMKQPKKAKPTPTMETTPLTAITFDDKHYRVSMLKSRFAST 67

Query: 128 ILKAQRQLSLTERLKLKTAYIADKLPVP--TPTQERRS---------------------- 187
           ILKAQ+QLS ++R   K   +  K P P  TP +ERR                       
Sbjct: 68  ILKAQQQLSESKR---KVCNVEKKPPTPALTPMEERREATREASWRNKKPTATATATATT 127

Query: 188 ------------EASQKALPRKIKEPPTP--TPMEEIRKAARKALEELERRVDVEDSHKS 230
                       E  Q+AL RK+K PPTP  T  EEIR+AAR+ALE+LER VDVEDSHKS
Sbjct: 128 TPTTNSNEEPTREVVQRALWRKMKLPPTPILTSTEEIRRAARQALEDLERSVDVEDSHKS 187

[Close]

BLAST of CmUC09G180300 vs. ExPASy TrEMBL
Match: A0A484N6Z8 (Bromo domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS38857 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.2e-05
Identity = 51/138 (36.96%), Postives = 73/138 (52.90%), Query Frame = 0


Query: 104 RVSMLKSRFATTILKAQRQLSLTERLKLKTAYIADKLPVPTPTQERRSEASQKAL---PR 163
           R +ML+SRFA TI KA  +  + + LKL+     ++L      ++ R E   KA     R
Sbjct: 393 RAAMLRSRFAETIFKANHKDDVVDPLKLQQE--KERLQKQQLAEKARIEEQIKAAEASTR 452

Query: 164 KIKEPPTPTPMEEIRKAARKALEELERRVDVEDSHKSVKDLEHLCGWP-----IPYVGGF 223
              E       E+ R+AAR ALE++ER VD++D+ K +KDLE LC  P     +   GG 
Sbjct: 453 MKAEVELKIQREKEREAARIALEKMERTVDLDDNLKILKDLEGLCQCPPCDGLLGNGGGV 512

Query: 224 -----KNRMEYYGLYLKD 229
                +N +E  GLY+KD
Sbjct: 513 NLSLSRNTLERLGLYIKD 528

[Close]

BLAST of CmUC09G180300 vs. ExPASy TrEMBL
Match: A0A6I9RMI1 (transcription factor GTE9 isoform X2 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105050831 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-04
Identity = 55/147 (37.41%), Postives = 78/147 (53.06%), Query Frame = 0


Query: 104 RVSMLKSRFATTILKAQRQLSLTERLKLKTAYI---ADKLPVPTPTQERRSEASQK---A 163
           R +MLKSRFA TILKAQ++  LT   K+  A +    +KL      ++ R EA  K   A
Sbjct: 527 RAAMLKSRFADTILKAQQKALLTHGEKVDPAKLQREREKLEKKQREEKARIEAEVKAAEA 586

Query: 164 LPRKIKEPPTPTPMEEIRKAARKALEELERRVDVEDSHKSVKDLEHLCGWP--------- 223
             R   E       E  R+AAR AL+++E+ VDV++SH  VKDLE   G+P         
Sbjct: 587 AARMKAEAEMKMQREREREAARLALQKMEKTVDVDNSH-LVKDLEDF-GYPHHLDMPDEV 646

Query: 224 -IPYVGGFK------NRMEYYGLYLKD 229
            + +V GF+      N +E  GL++K+
Sbjct: 647 VVNFVDGFELQTYLANPLEQLGLFMKN 671

[Close]

BLAST of CmUC09G180300 vs. ExPASy TrEMBL
Match: A0A6I9RMR9 (transcription factor GTE9 isoform X1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105050831 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-04
Identity = 55/147 (37.41%), Postives = 78/147 (53.06%), Query Frame = 0


Query: 104 RVSMLKSRFATTILKAQRQLSLTERLKLKTAYI---ADKLPVPTPTQERRSEASQK---A 163
           R +MLKSRFA TILKAQ++  LT   K+  A +    +KL      ++ R EA  K   A
Sbjct: 532 RAAMLKSRFADTILKAQQKALLTHGEKVDPAKLQREREKLEKKQREEKARIEAEVKAAEA 591

Query: 164 LPRKIKEPPTPTPMEEIRKAARKALEELERRVDVEDSHKSVKDLEHLCGWP--------- 223
             R   E       E  R+AAR AL+++E+ VDV++SH  VKDLE   G+P         
Sbjct: 592 AARMKAEAEMKMQREREREAARLALQKMEKTVDVDNSH-LVKDLEDF-GYPHHLDMPDEV 651

Query: 224 -IPYVGGFK------NRMEYYGLYLKD 229
            + +V GF+      N +E  GL++K+
Sbjct: 652 VVNFVDGFELQTYLANPLEQLGLFMKN 676

The following BLAST results are available for this feature:

BLAST of CmUC09G180300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061663.1	4.3e-33	53.69	transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa] >TYK21138.1 tran...	[more]
KAG6571342.1	3.9e-18	41.08	hypothetical protein SDJN03_30257, partial [Cucurbita argyrosperma subsp. sorori...	[more]
VFQ97081.1	1.9e-04	36.96	unnamed protein product [Cuscuta campestris]	[more]
XP_010929323.1	2.5e-04	37.41	transcription factor GTE9 isoform X2 [Elaeis guineensis]	[more]
XP_010929315.1	2.5e-04	37.41	transcription factor GTE9 isoform X1 [Elaeis guineensis] >XP_029123053.1 transcr...	[more]

BLAST of CmUC09G180300 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC09G180300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DC97	2.1e-33	53.69	Transcription factor GTE9 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0KGL2	2.3e-32	49.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421730 PE=4 SV=1	[more]
A0A484N6Z8	9.2e-05	36.96	Bromo domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS388...	[more]
A0A6I9RMI1	1.2e-04	37.41	transcription factor GTE9 isoform X2 OS=Elaeis guineensis var. tenera OX=51953 G...	[more]
A0A6I9RMR9	1.2e-04	37.41	transcription factor GTE9 isoform X1 OS=Elaeis guineensis var. tenera OX=51953 G...	[more]

BLAST of CmUC09G180300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 175..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC09G180300.1	CmUC09G180300.1	mRNA